Wall clock time and date at job start Tue Mar 31 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46796 * 2 1 4 4 H 1.09000 * 109.47495 * 304.30822 * 3 2 1 5 5 C 1.50703 * 109.47014 * 184.30389 * 3 2 1 6 6 H 1.08001 * 119.99821 * 239.72538 * 5 3 2 7 7 C 1.37877 * 119.99763 * 60.00300 * 5 3 2 8 8 N 1.31517 * 120.00222 * 359.72702 * 7 5 3 9 9 Si 1.86805 * 119.99850 * 179.72308 * 7 5 3 10 10 H 1.48499 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46857 * 120.00171 * 9 7 5 12 12 H 1.48502 * 109.46961 * 240.00017 * 9 7 5 13 13 N 1.46905 * 109.46879 * 64.30602 * 3 2 1 14 14 C 1.46896 * 111.00024 * 205.79513 * 13 3 2 15 15 C 1.52996 * 109.47285 * 174.89700 * 14 13 3 16 16 C 1.52995 * 109.47294 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47526 * 180.02562 * 16 15 14 18 18 C 1.47203 * 109.53912 * 59.99606 * 17 16 15 19 19 N 7.97381 * 93.12225 * 42.91050 * 2 1 3 20 20 C 1.53181 * 109.53766 * 299.82501 * 17 16 15 21 21 C 1.53110 * 109.15290 * 183.23713 * 20 17 16 22 22 O 1.42898 * 109.48418 * 57.47448 * 21 20 17 23 23 C 1.42899 * 114.10119 * 298.88506 * 22 21 20 24 24 C 1.53098 * 109.41385 * 61.15926 * 23 22 21 25 25 H 1.08995 * 109.47860 * 54.07653 * 1 2 3 26 26 H 1.09009 * 109.47022 * 174.07740 * 1 2 3 27 27 H 1.08999 * 109.47131 * 294.06901 * 1 2 3 28 28 H 1.09001 * 109.47220 * 240.00679 * 2 1 3 29 29 H 1.08995 * 109.47621 * 120.00400 * 2 1 3 30 30 H 0.96990 * 119.99740 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99802 * 81.84432 * 13 3 2 32 32 H 1.09004 * 109.47286 * 294.89805 * 14 13 3 33 33 H 1.09006 * 109.47105 * 54.89986 * 14 13 3 34 34 H 1.08994 * 109.47223 * 300.00257 * 15 14 13 35 35 H 1.09006 * 109.46815 * 60.00108 * 15 14 13 36 36 H 1.09004 * 109.47148 * 300.00026 * 16 15 14 37 37 H 1.09001 * 109.47585 * 59.99883 * 16 15 14 38 38 H 1.08997 * 109.52393 * 303.05349 * 20 17 16 39 39 H 1.08993 * 109.52339 * 63.24581 * 20 17 16 40 40 H 1.08996 * 109.40797 * 297.49580 * 21 20 17 41 41 H 1.09001 * 109.48900 * 177.50773 * 21 20 17 42 42 H 1.09006 * 109.48163 * 301.17795 * 23 22 21 43 43 H 1.08997 * 109.49552 * 181.14761 * 23 22 21 44 44 H 1.09002 * 109.52236 * 182.48381 * 24 23 22 45 45 H 1.09003 * 109.57197 * 62.33003 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6149 1.9782 -0.8488 5 6 3.5431 1.4439 -0.1066 6 1 4.1393 1.8956 0.6724 7 6 4.1571 0.8736 -1.2016 8 7 3.4311 0.3237 -2.1503 9 14 6.0202 0.8822 -1.3375 10 1 6.6001 1.5563 -0.1482 11 1 6.5179 -0.5152 -1.4056 12 1 6.4234 1.6118 -2.5665 13 7 1.6369 2.1043 1.2481 14 6 1.5417 3.5588 1.0658 15 6 0.9989 4.1987 2.3451 16 6 0.8991 5.7135 2.1550 17 6 0.3569 6.3536 3.4346 18 6 1.2649 6.0593 4.5553 19 7 1.9643 5.8315 5.4210 20 6 -1.0339 5.7892 3.7402 21 6 -1.6017 6.4936 4.9754 22 8 -1.6433 7.9030 4.7433 23 6 -0.3644 8.4923 4.5000 24 6 0.2522 7.8699 3.2445 25 1 -0.3634 0.6029 -0.8321 26 1 -0.3633 -1.0223 -0.1060 27 1 -0.3633 0.4191 0.9383 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8630 -0.0778 -2.9203 31 1 2.2697 1.8748 1.9997 32 1 2.5303 3.9633 0.8484 33 1 0.8691 3.7778 0.2364 34 1 0.0104 3.7943 2.5625 35 1 1.6715 3.9798 3.1745 36 1 1.8875 6.1183 1.9374 37 1 0.2264 5.9322 1.3257 38 1 -1.6923 5.9622 2.8889 39 1 -0.9586 4.7189 3.9320 40 1 -0.9654 6.2855 5.8355 41 1 -2.6095 6.1276 5.1716 42 1 0.2881 8.3103 5.3540 43 1 -0.4806 9.5662 4.3537 44 1 1.2464 8.2862 3.0822 45 1 -0.3786 8.0862 2.3822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577861530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:16 Heat of formation + Delta-G solvation = -66.338887 kcal Electronic energy + Delta-G solvation = -22192.184747 eV Core-core repulsion = 19014.785440 eV Total energy + Delta-G solvation = -3177.399307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13533 -38.35251 -37.68610 -36.23420 -34.63267 -33.35426 -32.17853 -31.41341 -28.65918 -27.05364 -24.89701 -24.66236 -23.63661 -22.79912 -22.00012 -21.21345 -18.74135 -17.89086 -17.04423 -16.96025 -16.78957 -16.13957 -15.92093 -15.77435 -15.49600 -15.30470 -14.82658 -14.69849 -14.39763 -14.14953 -13.56455 -13.46774 -13.34460 -13.18666 -13.11524 -13.01452 -12.90331 -12.70063 -12.60854 -12.44440 -12.27918 -12.11974 -12.01999 -11.67875 -11.49600 -11.40200 -11.32473 -11.12476 -10.96084 -10.47738 -10.45554 -9.03645 -8.06589 -6.28905 1.34520 1.37898 1.47238 1.69825 1.71729 2.38242 2.80785 2.96046 3.12443 3.45259 3.68795 3.74181 3.91510 4.00397 4.18080 4.25674 4.38477 4.46306 4.56201 4.62801 4.69493 4.78010 4.79016 4.81077 4.82602 4.86938 4.93011 4.97433 5.06979 5.11792 5.16585 5.19059 5.20959 5.34714 5.44660 5.45993 5.53032 5.65766 5.78816 6.11556 6.21120 6.22940 6.40347 6.50909 6.82863 7.00671 7.42665 8.89479 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.003462 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.607077 B = 8085.860885 C = 8731.490494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.561 4.561 6 H 0.044 0.956 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.069 3.931 15 C -0.108 4.108 16 C -0.100 4.100 17 C 0.041 3.959 18 C 0.235 3.765 19 N -0.488 5.488 20 C -0.143 4.143 21 C 0.054 3.946 22 O -0.390 6.390 23 C 0.053 3.947 24 C -0.139 4.139 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.324 0.676 32 H 0.004 0.996 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.118 0.882 42 H 0.031 0.969 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 15.075 8.852 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.600 4.600 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.061 4.061 15 C -0.146 4.146 16 C -0.139 4.139 17 C 0.037 3.963 18 C -0.082 4.082 19 N -0.163 5.163 20 C -0.181 4.181 21 C -0.022 4.022 22 O -0.308 6.308 23 C -0.024 4.024 24 C -0.178 4.178 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.022 0.978 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.136 0.864 42 H 0.049 0.951 43 H 0.139 0.861 44 H 0.109 0.891 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.083 14.637 9.892 20.855 hybrid contribution 2.558 -0.288 -0.512 2.624 sum -8.526 14.348 9.380 19.146 Atomic orbital electron populations 1.21532 0.96086 0.99507 1.00818 1.21371 0.94672 0.98410 0.99823 1.18937 0.91238 0.91587 0.86973 0.97827 1.22201 0.94324 1.37733 1.05760 0.93783 1.25619 1.01914 0.94787 0.95481 1.69997 1.36256 1.38434 1.10009 0.85684 0.81351 0.77802 0.77821 1.19986 1.20510 1.20430 1.60860 1.54375 1.07920 1.07875 1.21805 0.97923 0.88411 0.97947 1.21580 1.01918 0.95121 0.96013 1.21652 1.02886 0.93779 0.95546 1.18680 0.91515 0.98502 0.87586 1.29700 0.93107 0.91627 0.93734 1.81231 1.11661 1.10301 1.13151 1.22422 0.93302 1.01251 1.01169 1.22732 1.02960 0.80955 0.95569 1.87937 1.29533 1.21684 1.91685 1.22755 0.84568 0.99479 0.95567 1.22362 1.04163 0.90381 1.00877 0.94756 0.93915 0.92268 0.92177 0.95735 0.92828 0.86094 0.97775 0.91780 0.89603 0.94555 0.91247 0.86887 0.86381 0.89466 0.95131 0.86396 0.95099 0.86146 0.89101 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.72 71.98 0.70 -4.10 16 2 C -0.10 -4.97 5.45 30.59 0.17 -4.80 16 3 C 0.22 10.90 1.99 44.17 0.09 10.99 16 4 H 0.00 0.21 7.71 -2.39 -0.02 0.19 16 5 C -0.56 -30.52 8.46 25.60 0.22 -30.30 16 6 H 0.04 2.41 7.73 -2.91 -0.02 2.39 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -51.48 11.28 21.45 0.24 -51.24 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.68 -27.66 5.75 -495.43 -2.85 -30.51 16 14 C 0.07 2.35 5.51 86.30 0.48 2.82 16 15 C -0.11 -2.69 4.92 30.59 0.15 -2.54 16 16 C -0.10 -1.74 4.26 30.59 0.13 -1.61 16 17 C 0.04 0.64 0.51 -53.87 -0.03 0.61 16 18 C 0.24 5.49 10.45 89.44 0.94 6.43 16 19 N -0.49 -14.54 18.54 20.01 0.37 -14.17 16 20 C -0.14 -1.91 4.45 30.69 0.14 -1.77 16 21 C 0.05 0.80 6.61 72.02 0.48 1.27 16 22 O -0.39 -6.41 10.77 -148.98 -1.60 -8.01 16 23 C 0.05 0.71 6.61 72.01 0.48 1.19 16 24 C -0.14 -1.58 4.90 30.68 0.15 -1.43 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 2.16 7.90 -2.39 -0.02 2.14 16 28 H 0.06 3.24 5.96 -2.39 -0.01 3.23 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.26 14.13 8.31 -92.72 -0.77 13.36 16 31 H 0.32 13.46 8.46 -89.69 -0.76 12.70 16 32 H 0.00 0.15 8.11 -2.39 -0.02 0.13 16 33 H 0.06 2.15 7.93 -2.38 -0.02 2.13 16 34 H 0.09 1.93 6.51 -2.39 -0.02 1.92 16 35 H 0.04 1.03 7.23 -2.38 -0.02 1.01 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.25 6.63 -2.39 -0.02 1.23 16 40 H 0.03 0.54 7.39 -2.39 -0.02 0.53 16 41 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.03 0.51 7.39 -2.38 -0.02 0.49 16 43 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 45 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -64.97 355.00 2.91 -62.06 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.20 Total: 17.87 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.52 Total: -21.57 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -2.24 Total: -95.92 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.60 Total: -8.01 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.97 2.91 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577861530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.275 kcal (2) G-P(sol) polarization free energy of solvation -64.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds