Wall clock time and date at job start Tue Mar 31 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 H 1.09002 * 109.47078 * 54.73216 * 3 2 1 5 5 C 1.50693 * 109.47165 * 174.73274 * 3 2 1 6 6 H 1.08000 * 120.00312 * 120.18812 * 5 3 2 7 7 C 1.37889 * 119.99787 * 300.18429 * 5 3 2 8 8 N 1.31512 * 119.99884 * 166.64216 * 7 5 3 9 9 Si 1.86798 * 119.99941 * 346.64916 * 7 5 3 10 10 H 1.48506 * 109.46823 * 264.65581 * 9 7 5 11 11 H 1.48500 * 109.47100 * 24.65496 * 9 7 5 12 12 H 1.48492 * 109.47036 * 144.66023 * 9 7 5 13 13 N 1.46903 * 109.47168 * 294.73383 * 3 2 1 14 14 C 1.46891 * 111.00400 * 101.60856 * 13 3 2 15 15 C 1.53000 * 109.47544 * 183.32337 * 14 13 3 16 16 C 1.52995 * 109.47353 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46869 * 179.97438 * 16 15 14 18 18 C 1.47199 * 109.54580 * 59.99651 * 17 16 15 19 19 N 7.12812 * 58.62770 * 301.26701 * 2 1 3 20 20 C 1.53174 * 109.54310 * 299.81611 * 17 16 15 21 21 C 1.53105 * 109.15395 * 183.24127 * 20 17 16 22 22 O 1.42906 * 109.48814 * 57.48110 * 21 20 17 23 23 C 1.42902 * 114.09348 * 298.88531 * 22 21 20 24 24 C 1.53087 * 109.41610 * 61.15927 * 23 22 21 25 25 H 1.09000 * 109.47055 * 186.70668 * 1 2 3 26 26 H 1.08996 * 109.46877 * 306.71287 * 1 2 3 27 27 H 1.09002 * 109.46681 * 66.71509 * 1 2 3 28 28 H 1.08996 * 109.47351 * 240.00124 * 2 1 3 29 29 H 1.08994 * 109.46900 * 119.99838 * 2 1 3 30 30 H 0.96997 * 120.00347 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99459 * 225.56236 * 13 3 2 32 32 H 1.09003 * 109.47403 * 303.31905 * 14 13 3 33 33 H 1.09004 * 109.47481 * 63.32204 * 14 13 3 34 34 H 1.09003 * 109.46418 * 300.00172 * 15 14 13 35 35 H 1.08997 * 109.47309 * 59.99044 * 15 14 13 36 36 H 1.09000 * 109.46733 * 299.99511 * 16 15 14 37 37 H 1.08994 * 109.47395 * 59.99547 * 16 15 14 38 38 H 1.08996 * 109.52406 * 303.06107 * 20 17 16 39 39 H 1.09002 * 109.51849 * 63.25092 * 20 17 16 40 40 H 1.09001 * 109.40971 * 297.49169 * 21 20 17 41 41 H 1.09004 * 109.48925 * 177.50834 * 21 20 17 42 42 H 1.08999 * 109.48095 * 301.17626 * 23 22 21 43 43 H 1.09004 * 109.49161 * 181.14783 * 23 22 21 44 44 H 1.09006 * 109.52254 * 182.48919 * 24 23 22 45 45 H 1.08998 * 109.58030 * 62.32602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4446 0.1304 6 1 4.1499 1.8906 -0.6422 7 6 4.1380 0.8770 1.2364 8 7 5.4316 0.6400 1.2366 9 14 3.1089 0.4445 2.7341 10 1 3.1752 1.5551 3.7177 11 1 1.6983 0.2326 2.3211 12 1 3.6351 -0.7979 3.3542 13 7 1.6569 2.0974 -1.2580 14 6 0.4923 2.9712 -1.0632 15 6 0.0730 3.5694 -2.4076 16 6 -1.1396 4.4800 -2.2046 17 6 -1.5584 5.0787 -3.5489 18 6 -1.9096 3.9959 -4.4822 19 7 -2.1808 3.1588 -5.2021 20 6 -0.4012 5.8986 -4.1275 21 6 -0.8563 6.5593 -5.4315 22 8 -2.0043 7.3720 -5.1788 23 6 -3.1327 6.6495 -4.6821 24 6 -2.7698 5.9942 -3.3469 25 1 -0.3633 -1.0206 0.1200 26 1 -0.3633 0.6143 0.8238 27 1 -0.3633 0.4063 -0.9440 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8513 0.2404 2.0144 31 1 2.4326 2.6105 -1.6493 32 1 -0.3328 2.3904 -0.6509 33 1 0.7518 3.7742 -0.3733 34 1 0.8982 4.1502 -2.8199 35 1 -0.1864 2.7665 -3.0975 36 1 -1.9648 3.8995 -1.7921 37 1 -0.8796 5.2829 -1.5149 38 1 -0.1075 6.6683 -3.4138 39 1 0.4463 5.2426 -4.3263 40 1 -1.1097 5.7882 -6.1590 41 1 -0.0512 7.1798 -5.8251 42 1 -3.4159 5.8795 -5.3997 43 1 -3.9676 7.3347 -4.5356 44 1 -3.6148 5.4064 -2.9881 45 1 -2.5258 6.7652 -2.6161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577861531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:19 Heat of formation + Delta-G solvation = -36.125755 kcal Electronic energy + Delta-G solvation = -22298.325723 eV Core-core repulsion = 19122.236556 eV Total energy + Delta-G solvation = -3176.089167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48073 -37.34141 -36.59198 -35.20071 -33.11697 -31.89465 -31.57296 -30.33751 -27.76537 -25.93943 -24.13956 -23.20362 -22.32913 -22.09453 -20.98545 -19.60031 -17.25557 -16.91155 -16.39833 -16.19796 -15.65134 -15.21575 -15.17879 -14.63152 -14.26471 -13.96259 -13.87673 -13.40178 -13.09104 -12.84424 -12.75609 -12.67221 -12.33647 -12.27642 -12.05589 -12.03749 -11.79701 -11.63396 -11.43932 -11.27842 -10.97685 -10.82490 -10.74473 -10.51576 -10.44696 -10.18852 -9.90065 -9.78066 -9.19013 -9.06950 -8.48520 -7.44518 -6.14917 -4.11369 2.57498 2.60202 3.25007 3.35456 3.38408 3.48827 3.59037 4.18427 4.34446 4.37433 4.38319 4.54624 4.80117 4.93606 5.01281 5.10910 5.13543 5.18543 5.24249 5.31412 5.37839 5.55667 5.58310 5.64178 5.68003 5.70203 5.78482 5.90573 6.02879 6.06797 6.07351 6.26537 6.37497 6.42849 6.67735 6.76820 6.80299 7.02092 7.04953 7.38374 7.44493 7.63055 7.99150 8.34986 8.59363 8.92534 9.50463 10.97986 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.003358 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.662001 B = 8335.489108 C = 8615.268672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.193 3.807 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.861 3.139 10 H -0.284 1.284 11 H -0.242 1.242 12 H -0.287 1.287 13 N -0.682 5.682 14 C 0.057 3.943 15 C -0.123 4.123 16 C -0.106 4.106 17 C 0.039 3.961 18 C 0.214 3.786 19 N -0.430 5.430 20 C -0.147 4.147 21 C 0.056 3.944 22 O -0.378 6.378 23 C 0.056 3.944 24 C -0.144 4.144 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.264 0.736 31 H 0.338 0.662 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 13.078 -8.007 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.127 4.127 8 N -0.529 5.529 9 Si 0.688 3.312 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.213 1.213 13 N -0.313 5.313 14 C -0.073 4.073 15 C -0.161 4.161 16 C -0.145 4.145 17 C 0.035 3.965 18 C -0.104 4.104 19 N -0.104 5.104 20 C -0.185 4.185 21 C -0.021 4.021 22 O -0.297 6.297 23 C -0.021 4.021 24 C -0.183 4.183 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.935 11.373 -9.253 22.400 hybrid contribution 0.200 0.301 1.759 1.795 sum -16.735 11.674 -7.495 21.737 Atomic orbital electron populations 1.21847 0.98650 0.99332 1.00539 1.21985 0.92789 0.99508 1.00921 1.19422 0.95317 0.90708 0.86180 0.97978 1.21266 0.89474 1.39377 1.07018 0.90715 1.24921 0.94759 0.94362 0.98608 1.69967 1.10521 1.42567 1.29867 0.87339 0.82718 0.77995 0.83166 1.21058 1.16601 1.21270 1.60530 1.08194 1.33058 1.29475 1.22011 0.95590 0.94940 0.94731 1.21699 0.96798 0.98504 0.99066 1.21684 0.99343 1.00091 0.93389 1.18449 0.96878 0.88833 0.92331 1.29036 0.93429 0.94097 0.93824 1.81273 1.08547 1.10262 1.10340 1.22399 0.97255 1.00024 0.98836 1.22674 0.88674 0.95106 0.95662 1.87956 1.21626 1.34900 1.85181 1.22633 0.89195 0.96528 0.93719 1.22328 0.97110 0.99221 0.99603 0.94759 0.94392 0.92749 0.92332 0.92897 0.92648 0.84409 0.91602 0.95975 0.91483 0.91591 0.90826 0.89579 0.88543 0.89100 0.93397 0.87980 0.93421 0.88150 0.89823 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.64 37.16 0.32 -2.39 16 2 C -0.11 -2.52 4.73 -26.73 -0.13 -2.64 16 3 C 0.19 4.43 1.76 -68.87 -0.12 4.30 16 4 H 0.00 0.06 6.67 -51.93 -0.35 -0.29 16 5 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 6 H 0.07 2.20 7.65 -52.49 -0.40 1.80 16 7 C 0.08 2.16 5.35 -17.82 -0.10 2.07 16 8 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 9 Si 0.86 20.80 25.68 -169.99 -4.37 16.43 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.24 -5.48 5.15 56.52 0.29 -5.19 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.68 -13.33 6.09 -107.95 -0.66 -13.99 16 14 C 0.06 0.89 5.06 -3.83 -0.02 0.87 16 15 C -0.12 -1.48 4.90 -26.73 -0.13 -1.61 16 16 C -0.11 -0.93 4.26 -26.73 -0.11 -1.05 16 17 C 0.04 0.32 0.51 -157.11 -0.08 0.24 16 18 C 0.21 2.41 10.46 -20.73 -0.22 2.20 16 19 N -0.43 -6.05 18.54 42.19 0.78 -5.26 16 20 C -0.15 -1.10 4.45 -26.59 -0.12 -1.22 16 21 C 0.06 0.44 6.61 37.21 0.25 0.69 16 22 O -0.38 -3.38 10.77 -35.23 -0.38 -3.76 16 23 C 0.06 0.40 6.61 37.20 0.25 0.65 16 24 C -0.14 -0.92 4.90 -26.59 -0.13 -1.05 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.05 0.97 6.88 -51.93 -0.36 0.61 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.23 4.10 -51.93 -0.21 1.01 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.34 6.68 7.94 -39.29 -0.31 6.37 16 32 H 0.07 1.03 6.05 -51.93 -0.31 0.72 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.76 6.51 -51.93 -0.34 0.42 16 35 H 0.07 0.92 7.23 -51.93 -0.38 0.54 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.71 6.62 -51.93 -0.34 0.37 16 40 H 0.05 0.42 7.39 -51.93 -0.38 0.04 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.39 7.39 -51.93 -0.38 0.00 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -31.47 343.99 -6.98 -38.44 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.66 Total: 2.87 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.65 Total: -13.84 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.90 Total: -45.33 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.38 Total: -3.76 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.37 Total: 16.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.47 -6.98 -38.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577861531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.319 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds