Wall clock time and date at job start Tue Mar 31 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 H 1.09002 * 109.47078 * 54.73216 * 3 2 1 5 5 C 1.50693 * 109.47165 * 174.73274 * 3 2 1 6 6 H 1.08000 * 120.00312 * 120.18812 * 5 3 2 7 7 C 1.37889 * 119.99787 * 300.18429 * 5 3 2 8 8 N 1.31512 * 119.99884 * 166.64216 * 7 5 3 9 9 Si 1.86798 * 119.99941 * 346.64916 * 7 5 3 10 10 H 1.48506 * 109.46823 * 264.65581 * 9 7 5 11 11 H 1.48500 * 109.47100 * 24.65496 * 9 7 5 12 12 H 1.48492 * 109.47036 * 144.66023 * 9 7 5 13 13 N 1.46903 * 109.47168 * 294.73383 * 3 2 1 14 14 C 1.46891 * 111.00400 * 101.60856 * 13 3 2 15 15 C 1.53000 * 109.47544 * 183.32337 * 14 13 3 16 16 C 1.52995 * 109.47353 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46869 * 179.97438 * 16 15 14 18 18 C 1.47199 * 109.54580 * 59.99651 * 17 16 15 19 19 N 7.12812 * 58.62770 * 301.26701 * 2 1 3 20 20 C 1.53174 * 109.54310 * 299.81611 * 17 16 15 21 21 C 1.53105 * 109.15395 * 183.24127 * 20 17 16 22 22 O 1.42906 * 109.48814 * 57.48110 * 21 20 17 23 23 C 1.42902 * 114.09348 * 298.88531 * 22 21 20 24 24 C 1.53087 * 109.41610 * 61.15927 * 23 22 21 25 25 H 1.09000 * 109.47055 * 186.70668 * 1 2 3 26 26 H 1.08996 * 109.46877 * 306.71287 * 1 2 3 27 27 H 1.09002 * 109.46681 * 66.71509 * 1 2 3 28 28 H 1.08996 * 109.47351 * 240.00124 * 2 1 3 29 29 H 1.08994 * 109.46900 * 119.99838 * 2 1 3 30 30 H 0.96997 * 120.00347 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99459 * 225.56236 * 13 3 2 32 32 H 1.09003 * 109.47403 * 303.31905 * 14 13 3 33 33 H 1.09004 * 109.47481 * 63.32204 * 14 13 3 34 34 H 1.09003 * 109.46418 * 300.00172 * 15 14 13 35 35 H 1.08997 * 109.47309 * 59.99044 * 15 14 13 36 36 H 1.09000 * 109.46733 * 299.99511 * 16 15 14 37 37 H 1.08994 * 109.47395 * 59.99547 * 16 15 14 38 38 H 1.08996 * 109.52406 * 303.06107 * 20 17 16 39 39 H 1.09002 * 109.51849 * 63.25092 * 20 17 16 40 40 H 1.09001 * 109.40971 * 297.49169 * 21 20 17 41 41 H 1.09004 * 109.48925 * 177.50834 * 21 20 17 42 42 H 1.08999 * 109.48095 * 301.17626 * 23 22 21 43 43 H 1.09004 * 109.49161 * 181.14783 * 23 22 21 44 44 H 1.09006 * 109.52254 * 182.48919 * 24 23 22 45 45 H 1.08998 * 109.58030 * 62.32602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4446 0.1304 6 1 4.1499 1.8906 -0.6422 7 6 4.1380 0.8770 1.2364 8 7 5.4316 0.6400 1.2366 9 14 3.1089 0.4445 2.7341 10 1 3.1752 1.5551 3.7177 11 1 1.6983 0.2326 2.3211 12 1 3.6351 -0.7979 3.3542 13 7 1.6569 2.0974 -1.2580 14 6 0.4923 2.9712 -1.0632 15 6 0.0730 3.5694 -2.4076 16 6 -1.1396 4.4800 -2.2046 17 6 -1.5584 5.0787 -3.5489 18 6 -1.9096 3.9959 -4.4822 19 7 -2.1808 3.1588 -5.2021 20 6 -0.4012 5.8986 -4.1275 21 6 -0.8563 6.5593 -5.4315 22 8 -2.0043 7.3720 -5.1788 23 6 -3.1327 6.6495 -4.6821 24 6 -2.7698 5.9942 -3.3469 25 1 -0.3633 -1.0206 0.1200 26 1 -0.3633 0.6143 0.8238 27 1 -0.3633 0.4063 -0.9440 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8513 0.2404 2.0144 31 1 2.4326 2.6105 -1.6493 32 1 -0.3328 2.3904 -0.6509 33 1 0.7518 3.7742 -0.3733 34 1 0.8982 4.1502 -2.8199 35 1 -0.1864 2.7665 -3.0975 36 1 -1.9648 3.8995 -1.7921 37 1 -0.8796 5.2829 -1.5149 38 1 -0.1075 6.6683 -3.4138 39 1 0.4463 5.2426 -4.3263 40 1 -1.1097 5.7882 -6.1590 41 1 -0.0512 7.1798 -5.8251 42 1 -3.4159 5.8795 -5.3997 43 1 -3.9676 7.3347 -4.5356 44 1 -3.6148 5.4064 -2.9881 45 1 -2.5258 6.7652 -2.6161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577861531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:19 Heat of formation + Delta-G solvation = -57.840203 kcal Electronic energy + Delta-G solvation = -22299.267332 eV Core-core repulsion = 19122.236556 eV Total energy + Delta-G solvation = -3177.030776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13749 -38.57021 -37.72657 -36.21310 -34.64355 -33.60400 -32.18759 -31.55611 -29.26534 -27.11560 -24.76430 -24.54585 -23.71819 -22.80301 -22.03637 -21.32885 -18.92808 -17.89748 -17.31471 -17.00647 -16.89626 -16.28891 -15.86031 -15.77902 -15.53482 -15.06377 -14.97069 -14.80507 -14.62685 -14.22573 -13.92724 -13.62903 -13.50888 -13.29822 -13.16618 -12.96059 -12.89118 -12.75841 -12.62321 -12.47447 -12.30659 -12.23078 -11.91928 -11.64569 -11.55108 -11.31821 -11.22490 -11.11442 -10.92531 -10.58872 -10.45535 -9.02380 -8.32100 -6.32984 1.34296 1.38790 1.48745 1.71162 1.73632 2.35251 2.81418 2.95289 3.02505 3.41565 3.67765 3.73266 3.83475 3.99857 4.17808 4.26595 4.36185 4.41173 4.45984 4.49886 4.53228 4.66636 4.68733 4.73513 4.78348 4.81284 4.84131 4.92640 4.94173 5.04230 5.08965 5.14852 5.18450 5.19610 5.29835 5.34826 5.36467 5.45639 5.58857 5.80095 6.05638 6.22233 6.52663 6.53104 6.71094 6.92169 7.33588 8.84283 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.003358 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.662001 B = 8335.489108 C = 8615.268672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.199 3.801 4 H 0.006 0.994 5 C -0.538 4.538 6 H 0.036 0.964 7 C 0.018 3.982 8 N -0.943 5.943 9 Si 0.925 3.075 10 H -0.279 1.279 11 H -0.214 1.214 12 H -0.289 1.289 13 N -0.688 5.688 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.098 4.098 17 C 0.041 3.959 18 C 0.235 3.765 19 N -0.487 5.487 20 C -0.145 4.145 21 C 0.054 3.946 22 O -0.390 6.390 23 C 0.051 3.949 24 C -0.138 4.138 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.333 0.667 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.115 0.885 42 H 0.031 0.969 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.894 14.449 -6.597 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C 0.089 3.911 4 H 0.024 0.976 5 C -0.576 4.576 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.749 3.251 10 H -0.205 1.205 11 H -0.137 1.137 12 H -0.215 1.215 13 N -0.318 5.318 14 C -0.073 4.073 15 C -0.152 4.152 16 C -0.137 4.137 17 C 0.037 3.963 18 C -0.082 4.082 19 N -0.163 5.163 20 C -0.183 4.183 21 C -0.022 4.022 22 O -0.309 6.309 23 C -0.025 4.025 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.133 0.867 42 H 0.049 0.951 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.558 12.756 -7.863 24.639 hybrid contribution 1.074 -0.073 1.205 1.616 sum -18.484 12.684 -6.657 23.385 Atomic orbital electron populations 1.21740 0.95386 1.00932 1.01356 1.21925 0.95685 0.98268 0.99587 1.19277 0.92175 0.91895 0.87756 0.97648 1.21617 0.91936 1.38199 1.05832 0.94577 1.25819 0.95838 0.94507 1.01874 1.70111 1.12694 1.44465 1.30957 0.86314 0.82402 0.77562 0.78868 1.20539 1.13672 1.21483 1.60520 1.09155 1.34465 1.27701 1.22125 0.93773 0.94571 0.96838 1.21602 0.98606 0.98450 0.96572 1.21654 0.97829 1.00248 0.94000 1.18681 0.98173 0.88185 0.91267 1.29713 0.91822 0.93622 0.93076 1.81281 1.10574 1.12223 1.12178 1.22423 0.96635 1.00216 0.99047 1.22713 0.88943 0.94944 0.95634 1.87943 1.22124 1.35460 1.85405 1.22779 0.89358 0.96651 0.93756 1.22358 0.96432 0.99302 0.99550 0.92901 0.93186 0.92227 0.94092 0.93936 0.92606 0.84963 0.91269 0.95298 0.90853 0.93759 0.90214 0.86968 0.86500 0.89746 0.95124 0.86692 0.95081 0.86150 0.88694 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.64 71.98 0.62 -4.01 16 2 C -0.12 -4.97 4.73 30.60 0.14 -4.82 16 3 C 0.20 8.93 1.76 44.17 0.08 9.01 16 4 H 0.01 0.26 6.67 -2.39 -0.02 0.25 16 5 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 6 H 0.04 2.22 7.65 -2.91 -0.02 2.20 16 7 C 0.02 1.03 5.35 84.66 0.45 1.48 16 8 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 9 Si 0.92 42.54 25.68 68.60 1.76 44.30 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.21 -8.82 5.15 99.48 0.51 -8.31 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.69 -26.41 6.09 -495.46 -3.02 -29.43 16 14 C 0.06 1.61 5.06 86.30 0.44 2.05 16 15 C -0.11 -2.52 4.90 30.59 0.15 -2.37 16 16 C -0.10 -1.39 4.26 30.59 0.13 -1.26 16 17 C 0.04 0.56 0.51 -53.87 -0.03 0.53 16 18 C 0.23 5.08 10.46 89.43 0.94 6.01 16 19 N -0.49 -13.80 18.54 20.02 0.37 -13.43 16 20 C -0.14 -1.83 4.45 30.69 0.14 -1.70 16 21 C 0.05 0.78 6.61 72.02 0.48 1.26 16 22 O -0.39 -6.21 10.77 -148.98 -1.60 -7.82 16 23 C 0.05 0.62 6.61 72.01 0.48 1.10 16 24 C -0.14 -1.29 4.90 30.69 0.15 -1.14 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 27 H 0.06 1.95 6.88 -2.39 -0.02 1.93 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.88 4.10 -2.39 -0.01 1.87 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.33 13.29 7.94 -89.69 -0.71 12.58 16 32 H 0.07 1.95 6.05 -2.39 -0.01 1.94 16 33 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.07 1.52 6.51 -2.39 -0.02 1.51 16 35 H 0.04 1.18 7.23 -2.39 -0.02 1.16 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.19 6.62 -2.39 -0.02 1.17 16 40 H 0.03 0.54 7.39 -2.39 -0.02 0.52 16 41 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.03 0.48 7.39 -2.39 -0.02 0.46 16 43 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.34 343.99 2.27 -68.07 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.07 Total: 19.95 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 4.39 Total: -23.58 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -2.35 Total: -100.92 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.60 Total: -7.82 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.76 Total: 44.30 kcal Total: -70.34 2.27 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577861531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.225 kcal (2) G-P(sol) polarization free energy of solvation -70.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds