Wall clock time and date at job start Tue Mar 31 2020 01:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 H 1.09003 * 109.47222 * 55.90909 * 3 2 1 5 5 C 1.50697 * 109.47289 * 175.91357 * 3 2 1 6 6 H 1.08003 * 120.00410 * 120.00553 * 5 3 2 7 7 C 1.37877 * 119.99860 * 299.99787 * 5 3 2 8 8 N 1.31506 * 120.00270 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47097 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47101 * 120.00452 * 9 7 5 12 12 H 1.48502 * 109.47001 * 240.00071 * 9 7 5 13 13 N 1.46896 * 109.46989 * 295.91300 * 3 2 1 14 14 C 1.46909 * 110.99953 * 156.09208 * 13 3 2 15 15 H 1.08996 * 109.47226 * 34.69558 * 14 13 3 16 16 C 1.53001 * 109.46983 * 274.69093 * 14 13 3 17 17 C 1.50699 * 109.47094 * 154.69463 * 14 13 3 18 18 N 1.30254 * 125.62128 * 45.02442 * 17 14 13 19 19 C 1.34482 * 108.70609 * 179.97438 * 18 17 14 20 20 C 1.34327 * 107.66336 * 359.97438 * 19 18 17 21 21 C 1.50700 * 126.44449 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46848 * 0.02562 * 21 20 19 23 23 C 1.53001 * 109.47147 * 240.02867 * 21 20 19 24 24 C 1.52998 * 109.47622 * 120.02022 * 21 20 19 25 25 O 1.33968 * 125.62270 * 225.30838 * 17 14 13 26 26 H 1.08998 * 109.47407 * 185.06866 * 1 2 3 27 27 H 1.09001 * 109.47404 * 305.07357 * 1 2 3 28 28 H 1.09002 * 109.47502 * 65.07209 * 1 2 3 29 29 H 1.09000 * 109.47407 * 239.99857 * 2 1 3 30 30 H 1.08999 * 109.47153 * 120.00276 * 2 1 3 31 31 H 0.97002 * 120.00506 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00430 * 280.04760 * 13 3 2 33 33 H 1.08995 * 109.46830 * 184.99541 * 16 14 13 34 34 H 1.08995 * 109.47435 * 305.00548 * 16 14 13 35 35 H 1.09007 * 109.46613 * 65.00270 * 16 14 13 36 36 H 1.07994 * 126.16886 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47459 * 300.00676 * 22 21 20 38 38 H 1.09005 * 109.47100 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46850 * 60.00398 * 22 21 20 40 40 H 1.08996 * 109.46931 * 179.97438 * 23 21 20 41 41 H 1.09008 * 109.46643 * 299.99628 * 23 21 20 42 42 H 1.08995 * 109.47519 * 59.99008 * 23 21 20 43 43 H 1.08996 * 109.47472 * 300.00701 * 24 21 20 44 44 H 1.09008 * 109.46726 * 60.00030 * 24 21 20 45 45 H 1.08990 * 109.47202 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6180 1.9770 0.8511 5 6 3.5435 1.4436 0.1012 6 1 4.1372 1.8924 -0.6815 7 6 4.1613 0.8719 1.1932 8 7 3.4386 0.3251 2.1462 9 14 6.0251 0.8740 1.3191 10 1 6.6010 1.5464 0.1268 11 1 6.4376 1.6029 2.5454 12 1 6.5183 -0.5252 1.3854 13 7 1.6326 2.1058 -1.2457 14 6 1.5815 3.5639 -1.0734 15 1 2.3691 3.8765 -0.3878 16 6 0.2195 3.9624 -0.5014 17 6 1.7816 4.2348 -2.4079 18 7 1.2053 3.8904 -3.5241 19 6 1.6259 4.7156 -4.4991 20 6 2.4863 5.5893 -3.9507 21 6 3.2100 6.7015 -4.6651 22 6 2.8172 6.6981 -6.1439 23 6 4.7202 6.4915 -4.5381 24 6 2.8272 8.0439 -4.0390 25 8 2.5856 5.2803 -2.6429 26 1 -0.3634 -1.0236 0.0908 27 1 -0.3634 0.5905 0.8411 28 1 -0.3634 0.4331 -0.9319 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 3.8733 -0.0774 2.9143 32 1 2.2446 1.8529 -2.0070 33 1 0.1483 5.0491 -0.4565 34 1 -0.5717 3.5724 -1.1416 35 1 0.1119 3.5495 0.5017 36 1 1.3254 4.6824 -5.5359 37 1 3.0898 5.7417 -6.5900 38 1 3.3410 7.5022 -6.6608 39 1 1.7413 6.8477 -6.2343 40 1 5.2435 7.2957 -5.0552 41 1 4.9999 6.4939 -3.4845 42 1 4.9929 5.5351 -4.9841 43 1 1.7513 8.1935 -4.1295 44 1 3.1069 8.0463 -2.9854 45 1 3.3509 8.8482 -4.5554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581615778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:44 Heat of formation + Delta-G solvation = -1.658206 kcal Electronic energy + Delta-G solvation = -22780.840216 eV Core-core repulsion = 19606.245674 eV Total energy + Delta-G solvation = -3174.594542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.07150 -37.33786 -36.61134 -34.40494 -33.35850 -31.48145 -29.28618 -28.37243 -27.50781 -27.47497 -26.01314 -23.68573 -22.51647 -22.47402 -20.09948 -19.60530 -19.37166 -16.98577 -16.54197 -16.31567 -15.27110 -14.93151 -14.67570 -14.28230 -14.25781 -13.66608 -13.38968 -13.24676 -12.77509 -12.54578 -12.45264 -12.18121 -12.14119 -11.91558 -11.66304 -11.48519 -11.34996 -11.24426 -11.13264 -11.11743 -10.98019 -10.91726 -10.73219 -10.65758 -10.18059 -10.05155 -9.59844 -9.57203 -9.08342 -8.40442 -8.39183 -7.36102 -6.02848 -4.16205 1.73232 2.84744 3.04071 3.24248 3.33051 3.36632 4.30779 4.37628 4.51389 4.68489 4.69470 5.00874 5.18275 5.24276 5.31256 5.38993 5.40661 5.52176 5.61211 5.64345 5.66928 5.78920 5.81354 5.85689 6.00773 6.07006 6.11266 6.19631 6.34238 6.42132 6.44493 6.54378 6.58573 6.75163 6.77478 7.10018 7.21698 7.40772 7.56478 7.75226 8.03310 8.08991 8.12343 8.28357 8.58084 8.95208 9.51927 10.97098 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.004843 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.266999 B = 5779.792494 C = 6831.861199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.038 0.962 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.665 5.665 14 C 0.185 3.815 15 H 0.073 0.927 16 C -0.129 4.129 17 C 0.203 3.797 18 N -0.466 5.466 19 C -0.043 4.043 20 C -0.051 4.051 21 C 0.022 3.978 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.143 4.143 25 O -0.200 6.200 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 12.709 -11.811 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.056 0.944 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.298 5.298 14 C 0.074 3.926 15 H 0.091 0.909 16 C -0.188 4.188 17 C -0.004 4.004 18 N -0.194 5.194 19 C -0.182 4.182 20 C -0.104 4.104 21 C 0.021 3.979 22 C -0.198 4.198 23 C -0.201 4.201 24 C -0.200 4.200 25 O -0.086 6.086 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.193 0.807 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.935 12.046 -11.525 16.928 hybrid contribution 2.579 0.663 0.131 2.666 sum -0.356 12.709 -11.395 17.073 Atomic orbital electron populations 1.21695 0.98790 0.98333 1.00586 1.21467 0.92269 0.98743 1.01788 1.19296 0.92711 0.91432 0.85957 0.94409 1.21899 0.92658 1.38303 1.05971 0.92936 1.24899 0.97944 0.94848 0.95565 1.69877 1.34828 1.37795 1.09547 0.86620 0.86127 0.77808 0.77938 1.19993 1.20965 1.20876 1.61113 1.57195 1.01730 1.09748 1.19859 0.98707 0.89785 0.84286 0.90920 1.21763 0.95841 0.99387 1.01779 1.26854 0.88964 0.86380 0.98217 1.70496 1.24776 1.25853 0.98275 1.23072 1.00020 0.94768 1.00367 1.23233 1.03581 1.01808 0.81824 1.19025 0.94588 0.90370 0.93892 1.21895 1.02101 1.02795 0.92990 1.21924 0.93153 1.02216 1.02853 1.21912 1.01823 0.94959 1.01305 1.84391 1.54464 1.42932 1.26821 0.95686 0.94402 0.93200 0.95017 0.89043 0.92857 0.84761 0.93489 0.91449 0.91052 0.80666 0.91762 0.91265 0.91822 0.91694 0.91934 0.92104 0.92216 0.92007 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.73 37.15 0.36 -2.45 16 2 C -0.10 -2.47 5.44 -26.74 -0.15 -2.62 16 3 C 0.21 5.17 1.80 -68.87 -0.12 5.04 16 4 H 0.04 0.99 7.18 -51.93 -0.37 0.62 16 5 C -0.55 -14.62 8.21 -34.44 -0.28 -14.90 16 6 H 0.05 1.42 7.76 -52.48 -0.41 1.01 16 7 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -14.22 5.54 -102.17 -0.57 -14.79 16 14 C 0.18 3.60 2.97 -68.86 -0.20 3.39 16 15 H 0.07 1.53 7.59 -51.93 -0.39 1.13 16 16 C -0.13 -2.21 9.36 37.16 0.35 -1.86 16 17 C 0.20 3.80 6.84 -12.95 -0.09 3.71 16 18 N -0.47 -8.57 11.28 -11.10 -0.13 -8.70 16 19 C -0.04 -0.66 10.84 -17.77 -0.19 -0.85 16 20 C -0.05 -0.74 5.81 -35.69 -0.21 -0.95 16 21 C 0.02 0.23 0.99 -155.66 -0.15 0.08 16 22 C -0.14 -1.13 7.39 37.16 0.27 -0.86 16 23 C -0.14 -1.49 8.46 37.16 0.31 -1.18 16 24 C -0.14 -1.35 8.46 37.16 0.31 -1.04 16 25 O -0.20 -3.51 10.78 5.37 0.06 -3.46 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.00 7.87 -51.93 -0.41 0.59 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.33 7.49 8.06 -39.29 -0.32 7.17 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.24 7.51 -51.93 -0.39 0.85 16 36 H 0.18 2.11 7.32 -52.49 -0.38 1.73 16 37 H 0.06 0.52 7.95 -51.93 -0.41 0.10 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.49 7.95 -51.93 -0.41 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -28.45 362.50 -7.46 -35.92 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.02 Total: 6.07 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 0.12 Total: -12.68 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.06 Total: -47.32 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: 0.06 Total: -3.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.45 -7.46 -35.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581615778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.257 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds