Wall clock time and date at job start Tue Mar 31 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 H 1.09003 * 109.47222 * 55.90909 * 3 2 1 5 5 C 1.50697 * 109.47289 * 175.91357 * 3 2 1 6 6 H 1.08003 * 120.00410 * 120.00553 * 5 3 2 7 7 C 1.37877 * 119.99860 * 299.99787 * 5 3 2 8 8 N 1.31506 * 120.00270 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47097 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47101 * 120.00452 * 9 7 5 12 12 H 1.48502 * 109.47001 * 240.00071 * 9 7 5 13 13 N 1.46896 * 109.46989 * 295.91300 * 3 2 1 14 14 C 1.46909 * 110.99953 * 156.09208 * 13 3 2 15 15 H 1.08996 * 109.47226 * 34.69558 * 14 13 3 16 16 C 1.53001 * 109.46983 * 274.69093 * 14 13 3 17 17 C 1.50699 * 109.47094 * 154.69463 * 14 13 3 18 18 N 1.30254 * 125.62128 * 45.02442 * 17 14 13 19 19 C 1.34482 * 108.70609 * 179.97438 * 18 17 14 20 20 C 1.34327 * 107.66336 * 359.97438 * 19 18 17 21 21 C 1.50700 * 126.44449 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46848 * 0.02562 * 21 20 19 23 23 C 1.53001 * 109.47147 * 240.02867 * 21 20 19 24 24 C 1.52998 * 109.47622 * 120.02022 * 21 20 19 25 25 O 1.33968 * 125.62270 * 225.30838 * 17 14 13 26 26 H 1.08998 * 109.47407 * 185.06866 * 1 2 3 27 27 H 1.09001 * 109.47404 * 305.07357 * 1 2 3 28 28 H 1.09002 * 109.47502 * 65.07209 * 1 2 3 29 29 H 1.09000 * 109.47407 * 239.99857 * 2 1 3 30 30 H 1.08999 * 109.47153 * 120.00276 * 2 1 3 31 31 H 0.97002 * 120.00506 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00430 * 280.04760 * 13 3 2 33 33 H 1.08995 * 109.46830 * 184.99541 * 16 14 13 34 34 H 1.08995 * 109.47435 * 305.00548 * 16 14 13 35 35 H 1.09007 * 109.46613 * 65.00270 * 16 14 13 36 36 H 1.07994 * 126.16886 * 180.02562 * 19 18 17 37 37 H 1.08996 * 109.47459 * 300.00676 * 22 21 20 38 38 H 1.09005 * 109.47100 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46850 * 60.00398 * 22 21 20 40 40 H 1.08996 * 109.46931 * 179.97438 * 23 21 20 41 41 H 1.09008 * 109.46643 * 299.99628 * 23 21 20 42 42 H 1.08995 * 109.47519 * 59.99008 * 23 21 20 43 43 H 1.08996 * 109.47472 * 300.00701 * 24 21 20 44 44 H 1.09008 * 109.46726 * 60.00030 * 24 21 20 45 45 H 1.08990 * 109.47202 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6180 1.9770 0.8511 5 6 3.5435 1.4436 0.1012 6 1 4.1372 1.8924 -0.6815 7 6 4.1613 0.8719 1.1932 8 7 3.4386 0.3251 2.1462 9 14 6.0251 0.8740 1.3191 10 1 6.6010 1.5464 0.1268 11 1 6.4376 1.6029 2.5454 12 1 6.5183 -0.5252 1.3854 13 7 1.6326 2.1058 -1.2457 14 6 1.5815 3.5639 -1.0734 15 1 2.3691 3.8765 -0.3878 16 6 0.2195 3.9624 -0.5014 17 6 1.7816 4.2348 -2.4079 18 7 1.2053 3.8904 -3.5241 19 6 1.6259 4.7156 -4.4991 20 6 2.4863 5.5893 -3.9507 21 6 3.2100 6.7015 -4.6651 22 6 2.8172 6.6981 -6.1439 23 6 4.7202 6.4915 -4.5381 24 6 2.8272 8.0439 -4.0390 25 8 2.5856 5.2803 -2.6429 26 1 -0.3634 -1.0236 0.0908 27 1 -0.3634 0.5905 0.8411 28 1 -0.3634 0.4331 -0.9319 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 3.8733 -0.0774 2.9143 32 1 2.2446 1.8529 -2.0070 33 1 0.1483 5.0491 -0.4565 34 1 -0.5717 3.5724 -1.1416 35 1 0.1119 3.5495 0.5017 36 1 1.3254 4.6824 -5.5359 37 1 3.0898 5.7417 -6.5900 38 1 3.3410 7.5022 -6.6608 39 1 1.7413 6.8477 -6.2343 40 1 5.2435 7.2957 -5.0552 41 1 4.9999 6.4939 -3.4845 42 1 4.9929 5.5351 -4.9841 43 1 1.7513 8.1935 -4.1295 44 1 3.1069 8.0463 -2.9854 45 1 3.3509 8.8482 -4.5554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581615778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:43 Heat of formation + Delta-G solvation = -19.763241 kcal Electronic energy + Delta-G solvation = -22781.625309 eV Core-core repulsion = 19606.245674 eV Total energy + Delta-G solvation = -3175.379635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.37053 -38.68273 -37.88751 -35.82421 -35.08637 -33.41009 -30.89312 -29.64441 -28.26017 -28.23383 -27.93929 -25.26070 -24.17301 -23.70095 -21.62332 -21.24826 -20.58004 -18.79397 -18.01804 -17.64588 -16.82463 -16.49623 -16.23118 -15.39322 -15.19297 -15.04943 -14.93298 -14.59462 -14.32031 -13.87476 -13.78066 -13.25536 -13.20218 -13.15238 -13.05708 -12.96307 -12.75935 -12.65674 -12.55220 -12.47485 -12.35558 -12.26332 -12.09125 -12.01132 -11.92432 -11.50427 -11.46395 -11.33894 -11.02110 -10.47142 -9.63572 -9.19467 -8.08532 -6.30052 0.45723 1.34375 1.37672 1.46883 1.60253 1.73794 2.37884 3.05316 3.12097 3.44605 3.65733 3.85533 3.91744 4.09679 4.16221 4.27899 4.36013 4.63091 4.64199 4.67021 4.69855 4.78450 4.79706 4.80076 4.90366 4.93466 4.96111 4.98072 4.99667 5.07047 5.17605 5.21088 5.24589 5.29567 5.37617 5.40273 5.46285 5.50800 5.62472 5.76494 6.07202 6.13492 6.30539 6.63465 6.84861 6.92311 7.40969 8.88541 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.004843 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.266999 B = 5779.792494 C = 6831.861199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C 0.223 3.777 4 H 0.016 0.984 5 C -0.563 4.563 6 H 0.041 0.959 7 C 0.028 3.972 8 N -0.904 5.904 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.656 5.656 14 C 0.187 3.813 15 H 0.050 0.950 16 C -0.119 4.119 17 C 0.178 3.822 18 N -0.480 5.480 19 C -0.056 4.056 20 C -0.041 4.041 21 C 0.019 3.981 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.141 4.141 25 O -0.215 6.215 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.328 0.672 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.207 0.793 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 14.092 -13.640 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.034 0.966 5 C -0.603 4.603 6 H 0.059 0.941 7 C -0.173 4.173 8 N -0.543 5.543 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.203 1.203 13 N -0.287 5.287 14 C 0.075 3.925 15 H 0.068 0.932 16 C -0.177 4.177 17 C -0.029 4.029 18 N -0.209 5.209 19 C -0.195 4.195 20 C -0.094 4.094 21 C 0.018 3.982 22 C -0.195 4.195 23 C -0.201 4.201 24 C -0.198 4.198 25 O -0.101 6.101 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.758 13.439 -13.352 19.144 hybrid contribution 2.549 0.309 0.623 2.642 sum -0.209 13.749 -12.729 18.738 Atomic orbital electron populations 1.21547 0.96149 0.99616 1.00799 1.21335 0.94588 0.97895 1.00065 1.19070 0.91395 0.91765 0.86341 0.96598 1.22121 0.94022 1.38283 1.05828 0.94098 1.25553 1.01813 0.94618 0.95338 1.69979 1.36267 1.38169 1.09875 0.85708 0.81455 0.77880 0.77766 1.20199 1.20388 1.20303 1.61064 1.56300 1.03142 1.08147 1.19760 0.99230 0.88558 0.84917 0.93237 1.21671 0.94317 1.00647 1.01076 1.26456 0.90669 0.87722 0.98018 1.70437 1.25037 1.26618 0.98817 1.23577 1.00336 0.94397 1.01165 1.24181 1.02625 1.02027 0.80563 1.19359 0.94238 0.89375 0.95226 1.21922 1.02890 1.03877 0.90769 1.21937 0.93288 1.03046 1.01816 1.21914 1.02275 0.95099 1.00494 1.84384 1.54370 1.42738 1.28650 0.93789 0.94479 0.92648 0.95706 0.91640 0.92684 0.85573 0.91487 0.91426 0.91665 0.77648 0.91745 0.88755 0.91189 0.88685 0.94045 0.92863 0.92099 0.93799 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.73 71.98 0.70 -4.33 16 2 C -0.10 -4.84 5.44 30.59 0.17 -4.67 16 3 C 0.22 11.09 1.80 44.17 0.08 11.17 16 4 H 0.02 0.87 7.18 -2.39 -0.02 0.85 16 5 C -0.56 -30.83 8.21 25.60 0.21 -30.62 16 6 H 0.04 2.28 7.76 -2.91 -0.02 2.26 16 7 C 0.03 1.51 5.30 84.66 0.45 1.96 16 8 N -0.90 -50.96 11.29 21.45 0.24 -50.72 16 9 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.66 -28.75 5.54 -477.16 -2.64 -31.39 16 14 C 0.19 7.47 2.97 44.17 0.13 7.60 16 15 H 0.05 2.19 7.59 -2.39 -0.02 2.17 16 16 C -0.12 -4.09 9.36 71.98 0.67 -3.42 16 17 C 0.18 6.75 6.84 88.34 0.60 7.36 16 18 N -0.48 -17.50 11.28 -303.83 -3.43 -20.93 16 19 C -0.06 -1.64 10.84 83.39 0.90 -0.73 16 20 C -0.04 -1.15 5.81 24.79 0.14 -1.00 16 21 C 0.02 0.35 0.99 -52.93 -0.05 0.30 16 22 C -0.14 -1.73 7.39 71.98 0.53 -1.20 16 23 C -0.14 -2.71 8.46 71.98 0.61 -2.10 16 24 C -0.14 -2.34 8.46 71.98 0.61 -1.74 16 25 O -0.21 -7.64 10.78 -3.71 -0.04 -7.68 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 2.17 7.87 -2.39 -0.02 2.15 16 29 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 3.52 5.97 -2.39 -0.01 3.51 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.33 15.09 8.06 -89.69 -0.72 14.36 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.30 7.51 -2.38 -0.02 2.28 16 36 H 0.21 4.44 7.32 -2.91 -0.02 4.42 16 37 H 0.06 0.83 7.95 -2.39 -0.02 0.81 16 38 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.07 0.82 7.95 -2.39 -0.02 0.80 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -62.08 362.50 2.14 -59.94 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.23 Total: 26.51 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.76 Total: -21.42 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -5.83 Total: -103.03 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.04 Total: -7.68 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -62.08 2.14 -59.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581615778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.175 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds