Wall clock time and date at job start Tue Mar 31 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 H 1.09006 * 109.46601 * 306.29477 * 3 2 1 5 5 C 1.50697 * 109.46916 * 186.29624 * 3 2 1 6 6 H 1.08008 * 119.99294 * 245.71164 * 5 3 2 7 7 C 1.37871 * 120.00347 * 65.70916 * 5 3 2 8 8 N 1.31519 * 120.00337 * 190.93248 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 10.93891 * 7 5 3 10 10 H 1.48506 * 109.47274 * 88.57788 * 9 7 5 11 11 H 1.48500 * 109.46965 * 208.57708 * 9 7 5 12 12 H 1.48504 * 109.46991 * 328.57891 * 9 7 5 13 13 N 1.46903 * 109.47025 * 66.29076 * 3 2 1 14 14 C 1.46899 * 110.99801 * 207.86467 * 13 3 2 15 15 H 1.08996 * 109.47605 * 327.90305 * 14 13 3 16 16 C 1.53000 * 109.46568 * 87.89949 * 14 13 3 17 17 C 1.50700 * 109.47023 * 207.89636 * 14 13 3 18 18 N 1.30249 * 125.62049 * 314.69918 * 17 14 13 19 19 C 1.34480 * 108.70231 * 179.83958 * 18 17 14 20 20 C 1.34327 * 107.66662 * 0.42337 * 19 18 17 21 21 C 1.50704 * 126.44527 * 179.73147 * 20 19 18 22 22 C 1.52996 * 109.46904 * 0.02562 * 21 20 19 23 23 C 1.52995 * 109.47160 * 120.02113 * 21 20 19 24 24 C 1.53006 * 109.46763 * 240.01829 * 21 20 19 25 25 O 1.33971 * 125.61566 * 135.00397 * 17 14 13 26 26 H 1.09002 * 109.46867 * 64.41871 * 1 2 3 27 27 H 1.09000 * 109.47233 * 184.41867 * 1 2 3 28 28 H 1.09003 * 109.46775 * 304.41857 * 1 2 3 29 29 H 1.09002 * 109.47007 * 239.99651 * 2 1 3 30 30 H 1.09007 * 109.46841 * 119.99999 * 2 1 3 31 31 H 0.96999 * 120.00123 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00051 * 331.82276 * 13 3 2 33 33 H 1.09003 * 109.47248 * 175.04478 * 16 14 13 34 34 H 1.09003 * 109.47483 * 295.04419 * 16 14 13 35 35 H 1.09003 * 109.47585 * 55.05065 * 16 14 13 36 36 H 1.07998 * 126.17168 * 180.16777 * 19 18 17 37 37 H 1.09000 * 109.46820 * 60.00364 * 22 21 20 38 38 H 1.09003 * 109.47173 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47566 * 300.00085 * 22 21 20 40 40 H 1.08999 * 109.47755 * 60.00073 * 23 21 20 41 41 H 1.09003 * 109.46658 * 180.02562 * 23 21 20 42 42 H 1.08994 * 109.47298 * 299.99596 * 23 21 20 43 43 H 1.09005 * 109.46940 * 59.99687 * 24 21 20 44 44 H 1.08994 * 109.46831 * 179.97438 * 24 21 20 45 45 H 1.08990 * 109.47448 * 299.99977 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5876 1.9878 -0.8283 5 6 3.5390 1.4453 -0.1558 6 1 4.1649 1.7996 0.6499 7 6 4.1112 0.9955 -1.3267 8 7 5.4094 0.7940 -1.3893 9 14 3.0427 0.6725 -2.8246 10 1 2.9168 1.9195 -3.6211 11 1 3.6662 -0.3865 -3.6582 12 1 1.6957 0.2278 -2.3851 13 7 1.6783 2.0898 1.2681 14 6 1.5296 3.5409 1.0948 15 1 2.2178 3.8872 0.3237 16 6 0.0928 3.8599 0.6765 17 6 1.8404 4.2366 2.3949 18 7 1.4074 3.8778 3.5698 19 6 1.8936 4.7317 4.4879 20 6 2.6392 5.6435 3.8421 21 6 3.3772 6.8002 4.4653 22 6 3.1537 6.7918 5.9788 23 6 4.8727 6.6697 4.1700 24 6 2.8545 8.1136 3.8797 25 8 2.6031 5.3295 2.5321 26 1 -0.3633 0.4437 -0.9270 27 1 -0.3634 -1.0246 0.0792 28 1 -0.3633 0.5809 0.8478 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8120 0.4779 -2.2132 32 1 0.8394 1.6839 1.6548 33 1 -0.0416 4.9407 0.6333 34 1 -0.1037 3.4298 -0.3056 35 1 -0.5999 3.4365 1.4038 36 1 1.7134 4.6939 5.5520 37 1 3.5262 5.8561 6.3958 38 1 3.6871 7.6287 6.4296 39 1 2.0883 6.8847 6.1894 40 1 5.0321 6.6756 3.0917 41 1 5.4065 7.5061 4.6211 42 1 5.2451 5.7341 4.5871 43 1 1.7890 8.2065 4.0900 44 1 3.3879 8.9502 4.3307 45 1 3.0138 8.1195 2.8015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581615780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:49 Heat of formation + Delta-G solvation = 9.023753 kcal Electronic energy + Delta-G solvation = -22822.092283 eV Core-core repulsion = 19647.960946 eV Total energy + Delta-G solvation = -3174.131337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95990 -37.47538 -36.87998 -34.34851 -33.46974 -31.92067 -29.31764 -28.33626 -27.45507 -27.38463 -26.65248 -23.77554 -22.48357 -22.43870 -20.31288 -19.77004 -19.45382 -16.91734 -16.70276 -16.24262 -15.31444 -15.12393 -14.43111 -14.28283 -14.17675 -14.12297 -13.48793 -13.17369 -13.15817 -12.68022 -12.60766 -12.37058 -12.36523 -12.05031 -11.89072 -11.83625 -11.65481 -11.44303 -11.16687 -11.09513 -11.01937 -10.86418 -10.83860 -10.52783 -10.26105 -10.06456 -9.99155 -9.42849 -9.19754 -8.50707 -8.29786 -7.46694 -6.04697 -4.00104 1.84328 2.91626 3.13599 3.26672 3.35556 3.37901 4.37064 4.42222 4.59591 4.76307 4.77397 5.00793 5.17356 5.23628 5.35124 5.37586 5.46755 5.47556 5.53608 5.58758 5.69604 5.73116 5.75057 5.83074 5.87103 5.87672 5.88759 6.01545 6.07651 6.13184 6.17396 6.22741 6.27263 6.44957 6.52443 6.60355 6.70356 6.76803 6.92147 7.20904 7.74464 7.86034 8.20543 8.24599 8.74236 9.11099 9.59573 11.08740 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.004595 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.362300 B = 6091.555859 C = 6752.828080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C 0.196 3.804 4 H 0.001 0.999 5 C -0.502 4.502 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.659 5.659 14 C 0.183 3.817 15 H 0.110 0.890 16 C -0.172 4.172 17 C 0.226 3.774 18 N -0.477 5.477 19 C -0.042 4.042 20 C -0.052 4.052 21 C 0.022 3.978 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.142 4.142 25 O -0.198 6.198 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.262 0.738 32 H 0.333 0.667 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.174 0.826 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 11.838 9.694 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.088 3.912 4 H 0.018 0.982 5 C -0.540 4.540 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.292 5.292 14 C 0.070 3.930 15 H 0.128 0.872 16 C -0.232 4.232 17 C 0.018 3.982 18 N -0.205 5.205 19 C -0.181 4.181 20 C -0.105 4.105 21 C 0.022 3.978 22 C -0.197 4.197 23 C -0.202 4.202 24 C -0.200 4.200 25 O -0.084 6.084 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.192 0.808 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.727 11.294 9.857 16.865 hybrid contribution -0.718 0.327 -1.383 1.592 sum -8.445 11.621 8.474 16.678 Atomic orbital electron populations 1.21933 0.98478 1.00488 1.00513 1.22212 0.92608 0.99883 1.02496 1.19569 0.96851 0.89702 0.85051 0.98158 1.21018 0.89141 1.42250 1.01603 0.90320 1.24926 0.94711 0.94931 0.98471 1.69940 1.10460 1.45889 1.27146 0.87387 0.82351 0.78238 0.83674 1.20719 1.21462 1.17215 1.60140 1.39910 0.99135 1.30016 1.19682 0.96348 0.89858 0.87087 0.87242 1.22481 0.96371 1.02080 1.02248 1.26517 0.90015 0.84480 0.97210 1.70379 1.25009 1.26447 0.98644 1.22985 1.00856 0.93828 1.00418 1.23172 1.04773 1.01433 0.81154 1.19012 0.94476 0.89766 0.94574 1.21889 1.02383 1.02795 0.92681 1.21922 0.93187 1.02309 1.02750 1.21910 1.01177 0.95336 1.01534 1.84367 1.56375 1.40323 1.27381 0.93725 0.93665 0.93363 0.91459 0.91742 0.92769 0.84680 0.92331 0.91099 0.91778 0.80839 0.91730 0.91315 0.91943 0.91826 0.91792 0.91988 0.92351 0.91742 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.82 37.16 0.36 -2.26 16 2 C -0.13 -2.80 4.72 -26.73 -0.13 -2.92 16 3 C 0.20 4.45 1.38 -68.86 -0.09 4.35 16 4 H 0.00 0.02 6.16 -51.93 -0.32 -0.30 16 5 C -0.50 -13.97 9.11 -34.44 -0.31 -14.28 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 7 C 0.07 2.02 5.38 -17.82 -0.10 1.92 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 9 Si 0.86 20.54 25.80 -169.99 -4.39 16.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.45 5.23 56.52 0.30 -5.16 16 13 N -0.66 -13.61 6.04 -102.17 -0.62 -14.22 16 14 C 0.18 3.41 2.92 -68.87 -0.20 3.21 16 15 H 0.11 2.21 7.70 -51.93 -0.40 1.81 16 16 C -0.17 -2.58 9.16 37.16 0.34 -2.24 16 17 C 0.23 4.28 7.19 -12.95 -0.09 4.18 16 18 N -0.48 -8.86 11.28 -11.10 -0.13 -8.99 16 19 C -0.04 -0.66 10.84 -17.77 -0.19 -0.86 16 20 C -0.05 -0.79 5.81 -35.69 -0.21 -0.99 16 21 C 0.02 0.25 0.99 -155.66 -0.15 0.10 16 22 C -0.14 -1.21 7.39 37.16 0.27 -0.93 16 23 C -0.14 -1.63 8.46 37.15 0.31 -1.31 16 24 C -0.14 -1.40 8.46 37.16 0.31 -1.09 16 25 O -0.20 -3.60 10.78 5.34 0.06 -3.55 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 29 H 0.07 1.49 4.61 -51.93 -0.24 1.25 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.33 6.29 6.13 -39.29 -0.24 6.05 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.02 7.74 -51.93 -0.40 0.62 16 35 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.17 2.18 7.32 -52.49 -0.38 1.79 16 37 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -31.45 354.84 -6.70 -38.15 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.88 Total: 6.78 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 0.13 Total: -13.12 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.03 Total: -49.77 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: 0.06 Total: -3.55 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.39 Total: 16.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.45 -6.70 -38.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581615780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.171 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds