Wall clock time and date at job start Tue Mar 31 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 H 1.09006 * 109.46601 * 306.29477 * 3 2 1 5 5 C 1.50697 * 109.46916 * 186.29624 * 3 2 1 6 6 H 1.08008 * 119.99294 * 245.71164 * 5 3 2 7 7 C 1.37871 * 120.00347 * 65.70916 * 5 3 2 8 8 N 1.31519 * 120.00337 * 190.93248 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 10.93891 * 7 5 3 10 10 H 1.48506 * 109.47274 * 88.57788 * 9 7 5 11 11 H 1.48500 * 109.46965 * 208.57708 * 9 7 5 12 12 H 1.48504 * 109.46991 * 328.57891 * 9 7 5 13 13 N 1.46903 * 109.47025 * 66.29076 * 3 2 1 14 14 C 1.46899 * 110.99801 * 207.86467 * 13 3 2 15 15 H 1.08996 * 109.47605 * 327.90305 * 14 13 3 16 16 C 1.53000 * 109.46568 * 87.89949 * 14 13 3 17 17 C 1.50700 * 109.47023 * 207.89636 * 14 13 3 18 18 N 1.30249 * 125.62049 * 314.69918 * 17 14 13 19 19 C 1.34480 * 108.70231 * 179.83958 * 18 17 14 20 20 C 1.34327 * 107.66662 * 0.42337 * 19 18 17 21 21 C 1.50704 * 126.44527 * 179.73147 * 20 19 18 22 22 C 1.52996 * 109.46904 * 0.02562 * 21 20 19 23 23 C 1.52995 * 109.47160 * 120.02113 * 21 20 19 24 24 C 1.53006 * 109.46763 * 240.01829 * 21 20 19 25 25 O 1.33971 * 125.61566 * 135.00397 * 17 14 13 26 26 H 1.09002 * 109.46867 * 64.41871 * 1 2 3 27 27 H 1.09000 * 109.47233 * 184.41867 * 1 2 3 28 28 H 1.09003 * 109.46775 * 304.41857 * 1 2 3 29 29 H 1.09002 * 109.47007 * 239.99651 * 2 1 3 30 30 H 1.09007 * 109.46841 * 119.99999 * 2 1 3 31 31 H 0.96999 * 120.00123 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00051 * 331.82276 * 13 3 2 33 33 H 1.09003 * 109.47248 * 175.04478 * 16 14 13 34 34 H 1.09003 * 109.47483 * 295.04419 * 16 14 13 35 35 H 1.09003 * 109.47585 * 55.05065 * 16 14 13 36 36 H 1.07998 * 126.17168 * 180.16777 * 19 18 17 37 37 H 1.09000 * 109.46820 * 60.00364 * 22 21 20 38 38 H 1.09003 * 109.47173 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47566 * 300.00085 * 22 21 20 40 40 H 1.08999 * 109.47755 * 60.00073 * 23 21 20 41 41 H 1.09003 * 109.46658 * 180.02562 * 23 21 20 42 42 H 1.08994 * 109.47298 * 299.99596 * 23 21 20 43 43 H 1.09005 * 109.46940 * 59.99687 * 24 21 20 44 44 H 1.08994 * 109.46831 * 179.97438 * 24 21 20 45 45 H 1.08990 * 109.47448 * 299.99977 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5876 1.9878 -0.8283 5 6 3.5390 1.4453 -0.1558 6 1 4.1649 1.7996 0.6499 7 6 4.1112 0.9955 -1.3267 8 7 5.4094 0.7940 -1.3893 9 14 3.0427 0.6725 -2.8246 10 1 2.9168 1.9195 -3.6211 11 1 3.6662 -0.3865 -3.6582 12 1 1.6957 0.2278 -2.3851 13 7 1.6783 2.0898 1.2681 14 6 1.5296 3.5409 1.0948 15 1 2.2178 3.8872 0.3237 16 6 0.0928 3.8599 0.6765 17 6 1.8404 4.2366 2.3949 18 7 1.4074 3.8778 3.5698 19 6 1.8936 4.7317 4.4879 20 6 2.6392 5.6435 3.8421 21 6 3.3772 6.8002 4.4653 22 6 3.1537 6.7918 5.9788 23 6 4.8727 6.6697 4.1700 24 6 2.8545 8.1136 3.8797 25 8 2.6031 5.3295 2.5321 26 1 -0.3633 0.4437 -0.9270 27 1 -0.3634 -1.0246 0.0792 28 1 -0.3633 0.5809 0.8478 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8120 0.4779 -2.2132 32 1 0.8394 1.6839 1.6548 33 1 -0.0416 4.9407 0.6333 34 1 -0.1037 3.4298 -0.3056 35 1 -0.5999 3.4365 1.4038 36 1 1.7134 4.6939 5.5520 37 1 3.5262 5.8561 6.3958 38 1 3.6871 7.6287 6.4296 39 1 2.0883 6.8847 6.1894 40 1 5.0321 6.6756 3.0917 41 1 5.4065 7.5061 4.6211 42 1 5.2451 5.7341 4.5871 43 1 1.7890 8.2065 4.0900 44 1 3.3879 8.9502 4.3307 45 1 3.0138 8.1195 2.8015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581615780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:49 Heat of formation + Delta-G solvation = -14.084284 kcal Electronic energy + Delta-G solvation = -22823.094323 eV Core-core repulsion = 19647.960946 eV Total energy + Delta-G solvation = -3175.133377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.28748 -38.98800 -37.92674 -35.78191 -35.07704 -33.90169 -30.77601 -29.61593 -28.50942 -28.25075 -28.21309 -25.16006 -24.17191 -23.67107 -21.75690 -21.49436 -20.55396 -18.86880 -18.14038 -17.58276 -16.89730 -16.49147 -16.04490 -15.78955 -15.22345 -15.00468 -14.93462 -14.76499 -14.39941 -14.28961 -13.91547 -13.68711 -13.44937 -13.19892 -13.06494 -12.91517 -12.70923 -12.65324 -12.59490 -12.43285 -12.28632 -12.22489 -12.07463 -11.99305 -11.91010 -11.73546 -11.31771 -11.25576 -11.11388 -10.64393 -9.57362 -9.12800 -8.25524 -6.26528 0.53575 1.36908 1.38787 1.48694 1.65833 1.80630 2.37552 3.07610 3.14021 3.45391 3.66373 3.86025 3.92973 4.01820 4.11825 4.22073 4.25707 4.38971 4.43727 4.51512 4.56466 4.67531 4.67977 4.77165 4.80333 4.81363 4.90641 4.93916 4.94101 5.00927 5.06787 5.09463 5.14350 5.21233 5.22544 5.30509 5.32246 5.41551 5.43381 5.50385 5.79008 6.02871 6.43851 6.78891 6.87994 6.90272 7.37898 8.92336 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.004595 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.362300 B = 6091.555859 C = 6752.828080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.204 3.796 4 H 0.011 0.989 5 C -0.506 4.506 6 H 0.018 0.982 7 C 0.010 3.990 8 N -0.952 5.952 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.210 1.210 13 N -0.674 5.674 14 C 0.182 3.818 15 H 0.082 0.918 16 C -0.159 4.159 17 C 0.198 3.802 18 N -0.489 5.489 19 C -0.057 4.057 20 C -0.048 4.048 21 C 0.019 3.981 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.139 4.139 25 O -0.218 6.218 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.345 0.655 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.205 0.795 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 12.763 10.244 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.095 3.905 4 H 0.029 0.971 5 C -0.545 4.545 6 H 0.037 0.963 7 C -0.186 4.186 8 N -0.593 5.593 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.132 1.132 13 N -0.308 5.308 14 C 0.070 3.930 15 H 0.100 0.900 16 C -0.219 4.219 17 C -0.010 4.010 18 N -0.218 5.218 19 C -0.195 4.195 20 C -0.101 4.101 21 C 0.018 3.982 22 C -0.194 4.194 23 C -0.201 4.201 24 C -0.196 4.196 25 O -0.105 6.105 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.221 0.779 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.556 12.232 10.432 19.233 hybrid contribution 0.301 0.124 -1.379 1.417 sum -10.255 12.357 9.053 18.434 Atomic orbital electron populations 1.21851 0.94516 1.02419 1.01767 1.22087 0.96069 0.97669 1.01319 1.19354 0.93267 0.91488 0.86344 0.97146 1.21250 0.91827 1.41422 0.99989 0.96327 1.25858 0.96049 0.94673 1.02049 1.70120 1.13030 1.47910 1.28197 0.86252 0.81960 0.78141 0.78612 1.20168 1.21712 1.13233 1.59911 1.41069 1.00493 1.29340 1.19664 0.98195 0.88509 0.86625 0.89999 1.22368 0.93510 1.03209 1.02773 1.26539 0.91414 0.85469 0.97548 1.70325 1.25445 1.27108 0.98970 1.23502 1.01042 0.93456 1.01464 1.24115 1.03880 1.02109 0.79982 1.19336 0.93659 0.88879 0.96299 1.21909 1.03460 1.03806 0.90179 1.21937 0.93858 1.03027 1.01327 1.21899 1.01834 0.95364 1.00508 1.84366 1.56463 1.40398 1.29252 0.92565 0.91470 0.92017 0.92599 0.93135 0.92770 0.83331 0.90937 0.90126 0.90774 0.77862 0.92029 0.88746 0.91010 0.94229 0.88597 0.93280 0.91910 0.88915 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.82 71.98 0.71 -3.70 16 2 C -0.13 -5.37 4.72 30.60 0.14 -5.22 16 3 C 0.20 9.25 1.38 44.17 0.06 9.31 16 4 H 0.01 0.48 6.16 -2.38 -0.01 0.46 16 5 C -0.51 -29.52 9.11 25.60 0.23 -29.29 16 6 H 0.02 1.26 8.06 -2.91 -0.02 1.24 16 7 C 0.01 0.60 5.38 84.65 0.46 1.06 16 8 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 9 Si 0.93 42.56 25.80 68.60 1.77 44.33 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.21 -8.31 5.23 99.48 0.52 -7.79 16 13 N -0.67 -28.08 6.04 -477.15 -2.88 -30.96 16 14 C 0.18 6.92 2.92 44.17 0.13 7.05 16 15 H 0.08 3.49 7.70 -2.39 -0.02 3.47 16 16 C -0.16 -4.51 9.16 71.98 0.66 -3.85 16 17 C 0.20 7.68 7.19 88.34 0.64 8.31 16 18 N -0.49 -18.20 11.28 -303.83 -3.43 -21.62 16 19 C -0.06 -1.74 10.84 83.39 0.90 -0.84 16 20 C -0.05 -1.45 5.81 24.79 0.14 -1.31 16 21 C 0.02 0.40 0.99 -52.93 -0.05 0.35 16 22 C -0.14 -1.97 7.39 71.98 0.53 -1.43 16 23 C -0.14 -3.18 8.46 71.98 0.61 -2.58 16 24 C -0.14 -2.49 8.46 71.98 0.61 -1.88 16 25 O -0.22 -8.23 10.78 -3.81 -0.04 -8.27 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.67 6.40 -2.39 -0.02 1.66 16 29 H 0.06 2.36 4.61 -2.39 -0.01 2.35 16 30 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.35 12.70 6.13 -89.70 -0.55 12.15 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.11 7.74 -2.39 -0.02 2.10 16 35 H 0.07 1.95 8.03 -2.39 -0.02 1.94 16 36 H 0.20 4.73 7.32 -2.91 -0.02 4.71 16 37 H 0.06 0.94 7.95 -2.39 -0.02 0.92 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.92 7.95 -2.39 -0.02 0.90 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -73.31 354.84 1.71 -71.60 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.22 Total: 29.51 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 5.77 Total: -24.03 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -6.01 Total: -113.13 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.04 Total: -8.27 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.77 Total: 44.33 kcal Total: -73.31 1.71 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581615780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.513 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds