Wall clock time and date at job start Tue Mar 31 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46404 * 2 1 4 4 H 1.09004 * 109.46750 * 177.95034 * 3 2 1 5 5 C 1.50698 * 109.47612 * 57.94903 * 3 2 1 6 6 H 1.08002 * 119.99555 * 240.00050 * 5 3 2 7 7 C 1.37872 * 119.99783 * 59.99879 * 5 3 2 8 8 N 1.31509 * 120.00390 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99590 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47006 * 89.99771 * 9 7 5 11 11 H 1.48500 * 109.47118 * 209.99557 * 9 7 5 12 12 H 1.48502 * 109.47350 * 329.99761 * 9 7 5 13 13 N 1.46905 * 109.47019 * 297.94099 * 3 2 1 14 14 C 1.46897 * 111.00291 * 273.83856 * 13 3 2 15 15 C 1.50697 * 109.46867 * 174.45839 * 14 13 3 16 16 O 1.21284 * 120.00579 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00065 * 180.02562 * 15 14 13 18 18 C 1.46505 * 120.00124 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47001 * 154.99737 * 18 17 15 20 20 C 1.52999 * 117.49979 * 231.24906 * 19 18 17 21 21 C 1.53000 * 117.49883 * 299.90721 * 19 18 17 22 22 C 1.53004 * 109.46469 * 274.99292 * 18 17 15 23 23 C 1.53002 * 117.49521 * 128.74844 * 22 18 17 24 24 C 1.53002 * 117.49757 * 60.09459 * 22 18 17 25 25 H 1.08992 * 109.47664 * 54.46858 * 1 2 3 26 26 H 1.09008 * 109.46700 * 174.46918 * 1 2 3 27 27 H 1.08999 * 109.47438 * 294.46319 * 1 2 3 28 28 H 1.08999 * 109.47123 * 239.99833 * 2 1 3 29 29 H 1.08998 * 109.46694 * 119.99230 * 2 1 3 30 30 H 0.96999 * 120.00168 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99577 * 149.88195 * 13 3 2 32 32 H 1.08996 * 109.47273 * 54.45725 * 14 13 3 33 33 H 1.08996 * 109.47282 * 294.45620 * 14 13 3 34 34 H 0.97002 * 119.99699 * 359.97438 * 17 15 14 35 35 H 1.08994 * 109.47158 * 34.99220 * 18 17 15 36 36 H 1.08997 * 115.55335 * 85.58075 * 19 18 17 37 37 H 1.08995 * 117.50323 * 215.00544 * 20 19 18 38 38 H 1.09011 * 117.49661 * 0.02562 * 20 19 18 39 39 H 1.08997 * 117.49576 * 359.97438 * 21 19 18 40 40 H 1.09000 * 117.49918 * 144.97746 * 21 19 18 41 41 H 1.08997 * 115.55518 * 274.41610 * 22 18 17 42 42 H 1.09003 * 117.49611 * 359.97438 * 23 22 18 43 43 H 1.08995 * 117.49936 * 145.01564 * 23 22 18 44 44 H 1.09003 * 117.49212 * 214.97497 * 24 22 18 45 45 H 1.08997 * 117.49864 * 359.96712 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0368 5 6 1.4964 2.1675 1.2042 6 1 0.8793 3.0442 1.0736 7 6 1.7870 1.7116 2.4725 8 7 2.5380 0.6438 2.6314 9 14 1.1128 2.6099 3.9651 10 1 -0.2082 2.0389 4.3315 11 1 2.0529 2.4528 5.1038 12 1 0.9575 4.0520 3.6467 13 7 1.5912 2.1205 -1.2236 14 6 2.5277 1.8838 -2.3303 15 6 1.9682 2.4776 -3.5974 16 8 0.8948 3.0419 -3.5803 17 7 2.6603 2.3806 -4.7499 18 6 2.1167 2.9583 -5.9816 19 6 3.2625 3.2804 -6.9428 20 6 3.3118 4.6898 -7.5362 21 6 4.3254 4.2731 -6.4675 22 6 1.1662 1.9555 -6.6389 23 6 -0.2292 2.4519 -7.0228 24 6 -0.0538 1.5055 -5.8326 25 1 -0.3634 0.5972 -0.8362 26 1 -0.3633 -1.0230 -0.0991 27 1 -0.3634 0.4256 0.9354 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 2.7428 0.3233 3.5237 31 1 1.4630 3.1084 -1.0633 32 1 2.6694 0.8113 -2.4633 33 1 3.4855 2.3513 -2.1020 34 1 3.5186 1.9290 -4.7636 35 1 1.5730 3.8728 -5.7448 36 1 3.5910 2.4562 -7.5758 37 1 3.6726 4.7927 -8.5595 38 1 2.5280 5.3877 -7.2414 39 1 4.2079 4.6970 -5.4702 40 1 5.3531 4.1017 -6.7875 41 1 1.6365 1.2208 -7.2925 42 1 -0.4701 3.4927 -6.8067 43 1 -0.6770 2.0436 -7.9288 44 1 -0.3862 0.4748 -5.9561 45 1 -0.1790 1.9234 -4.8338 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:22 Heat of formation + Delta-G solvation = 8.186074 kcal Electronic energy + Delta-G solvation = -22442.033177 eV Core-core repulsion = 19267.865515 eV Total energy + Delta-G solvation = -3174.167662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98080 -37.90050 -36.39322 -35.89684 -33.59885 -32.51231 -30.65637 -28.26706 -26.66336 -24.50078 -23.06821 -22.62831 -22.24271 -21.37154 -20.52515 -20.08333 -18.95149 -17.14017 -16.27773 -16.21736 -15.85602 -15.21285 -15.05509 -14.64483 -14.02342 -13.97069 -13.51002 -13.28085 -13.05323 -12.74807 -12.12082 -11.93451 -11.82052 -11.77793 -11.56912 -11.39083 -11.20812 -10.92525 -10.75980 -10.72266 -10.64093 -10.37792 -10.29319 -10.08051 -9.99725 -9.84245 -9.36554 -9.21827 -8.82587 -8.76568 -8.45400 -7.22385 -6.01155 -4.05846 3.00229 3.08378 3.31693 3.38221 3.41857 3.73041 3.97406 4.29888 4.42697 4.63593 4.76225 4.90736 5.01767 5.07771 5.11774 5.24078 5.29598 5.40938 5.42658 5.44673 5.65018 5.68917 5.71405 5.88320 5.89894 5.93454 6.00920 6.05865 6.17260 6.48830 6.54737 6.66553 6.74631 6.88984 7.25903 7.28083 7.51656 7.70165 7.77285 7.83034 7.86719 8.26847 8.38802 8.58639 8.69073 9.03190 9.58880 11.05042 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.003684 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.983765 B = 7598.954621 C = 8075.178452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.667 5.667 14 C 0.044 3.956 15 C 0.516 3.484 16 O -0.522 6.522 17 N -0.730 5.730 18 C 0.208 3.792 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.174 4.174 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.179 4.179 25 H 0.049 0.951 26 H 0.012 0.988 27 H 0.051 0.949 28 H 0.008 0.992 29 H 0.086 0.914 30 H 0.260 0.740 31 H 0.339 0.661 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.398 0.602 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 2.959 -19.539 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.300 5.300 14 C -0.089 4.089 15 C 0.303 3.697 16 O -0.397 6.397 17 N -0.383 5.383 18 C 0.103 3.897 19 C -0.180 4.180 20 C -0.207 4.207 21 C -0.211 4.211 22 C -0.186 4.186 23 C -0.211 4.211 24 C -0.216 4.216 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.231 0.769 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.074 2.752 -19.520 19.822 hybrid contribution 0.909 0.556 0.952 1.429 sum 2.983 3.308 -18.568 19.095 Atomic orbital electron populations 1.21444 0.97389 0.97139 1.01768 1.21431 0.95265 0.98072 0.99191 1.19168 0.93252 0.91717 0.84945 0.98156 1.21176 1.31563 1.12019 0.90222 0.92169 1.24865 0.95062 0.95034 0.98833 1.69882 1.37480 1.23150 1.22366 0.86565 0.78797 0.80145 0.82328 1.20613 1.21364 1.19939 1.60395 1.46072 1.17184 1.06311 1.21780 0.95171 1.01265 0.90728 1.21062 0.84879 0.78936 0.84779 1.90598 1.21115 1.42269 1.85766 1.46114 1.24048 1.60160 1.07978 1.19920 0.91616 0.95515 0.82650 1.22497 0.99184 0.94027 1.02273 1.22970 1.02446 0.96764 0.98487 1.22944 0.95169 1.03290 0.99726 1.22616 0.89910 1.02173 1.03931 1.22888 0.98541 1.00178 0.99448 1.23342 1.00318 0.99335 0.98616 0.93199 0.96927 0.92959 0.97299 0.89610 0.92985 0.84272 0.89010 0.93652 0.76885 0.89592 0.87382 0.88618 0.88619 0.88504 0.88641 0.88259 0.88951 0.89305 0.89635 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.46 37.16 0.35 -2.43 16 2 C -0.10 -2.44 5.57 -26.73 -0.15 -2.59 16 3 C 0.22 5.32 2.30 -68.86 -0.16 5.17 16 4 H 0.00 0.02 7.84 -51.93 -0.41 -0.38 16 5 C -0.51 -13.75 7.33 -34.44 -0.25 -14.00 16 6 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.94 11.34 55.43 0.63 -24.31 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -14.31 5.07 -109.22 -0.55 -14.86 16 14 C 0.04 0.75 5.94 -4.98 -0.03 0.72 16 15 C 0.52 8.22 7.22 -10.99 -0.08 8.14 16 16 O -0.52 -10.05 13.34 5.55 0.07 -9.98 16 17 N -0.73 -8.70 4.94 -53.80 -0.27 -8.96 16 18 C 0.21 2.30 2.46 -67.93 -0.17 2.13 16 19 C -0.16 -1.37 5.22 -90.62 -0.47 -1.84 16 20 C -0.17 -1.33 10.18 -26.70 -0.27 -1.60 16 21 C -0.17 -1.42 10.13 -26.70 -0.27 -1.69 16 22 C -0.17 -1.86 5.36 -90.62 -0.49 -2.35 16 23 C -0.17 -1.94 10.18 -26.69 -0.27 -2.21 16 24 C -0.18 -2.40 9.74 -26.69 -0.26 -2.66 16 25 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 26 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.05 1.30 7.37 -51.93 -0.38 0.91 16 28 H 0.01 0.19 7.42 -51.93 -0.39 -0.20 16 29 H 0.09 2.29 6.13 -51.93 -0.32 1.97 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.34 7.51 8.10 -39.29 -0.32 7.19 16 32 H 0.09 1.53 7.38 -51.93 -0.38 1.15 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 35 H 0.09 1.14 7.09 -51.93 -0.37 0.78 16 36 H 0.11 0.81 8.03 -51.93 -0.42 0.40 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.79 8.05 -51.92 -0.42 0.37 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.99 8.03 -51.93 -0.42 0.57 16 42 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.12 2.09 5.02 -51.93 -0.26 1.83 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -29.19 359.44 -10.06 -39.25 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.73 Total: 10.78 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.61 Total: -13.56 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.19 Total: -48.14 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.19 -10.06 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.435 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds