Wall clock time and date at job start Tue Mar 31 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47394 * 2 1 4 4 H 1.09000 * 109.47733 * 303.43622 * 3 2 1 5 5 C 1.50690 * 109.47599 * 183.42655 * 3 2 1 6 6 H 1.08002 * 120.00630 * 245.51904 * 5 3 2 7 7 C 1.37885 * 119.99512 * 65.51628 * 5 3 2 8 8 N 1.31523 * 119.99641 * 193.60990 * 7 5 3 9 9 Si 1.86793 * 120.00061 * 13.60735 * 7 5 3 10 10 H 1.48501 * 109.47017 * 84.87344 * 9 7 5 11 11 H 1.48502 * 109.47090 * 204.87041 * 9 7 5 12 12 H 1.48499 * 109.47333 * 324.86843 * 9 7 5 13 13 N 1.46908 * 109.46637 * 63.42871 * 3 2 1 14 14 C 1.46901 * 111.00028 * 205.29089 * 13 3 2 15 15 H 1.09004 * 109.36165 * 328.46276 * 14 13 3 16 16 C 1.53063 * 109.36138 * 208.73462 * 14 13 3 17 17 C 1.53648 * 108.23459 * 191.15824 * 16 14 13 18 18 H 1.09003 * 109.96224 * 187.85651 * 17 16 14 19 19 C 1.53110 * 108.47844 * 308.13417 * 17 16 14 20 20 C 1.53000 * 109.74078 * 175.91361 * 19 17 16 21 21 C 1.53069 * 109.75044 * 300.28410 * 20 19 17 22 22 C 1.52982 * 109.13751 * 60.64765 * 21 20 19 23 23 C 1.52476 * 109.94715 * 300.36489 * 22 21 20 24 24 H 1.08999 * 107.70897 * 176.33823 * 23 22 21 25 25 N 1.45469 * 111.02232 * 294.66684 * 23 22 21 26 26 C 1.33531 * 123.69765 * 143.75603 * 25 23 22 27 27 O 1.21278 * 118.26321 * 177.46488 * 26 25 23 28 28 H 1.09003 * 109.46411 * 304.76159 * 1 2 3 29 29 H 1.08991 * 109.47570 * 64.76364 * 1 2 3 30 30 H 1.09001 * 109.46999 * 184.76562 * 1 2 3 31 31 H 1.09005 * 109.46726 * 240.00471 * 2 1 3 32 32 H 1.08996 * 109.47622 * 120.00968 * 2 1 3 33 33 H 0.96997 * 119.99716 * 179.97438 * 8 7 5 34 34 H 1.00896 * 110.99696 * 81.33793 * 13 3 2 35 35 H 1.08995 * 109.71216 * 71.47445 * 16 14 13 36 36 H 1.08999 * 109.74267 * 310.85998 * 16 14 13 37 37 H 1.08994 * 109.41537 * 296.62492 * 19 17 16 38 38 H 1.09000 * 109.41345 * 56.43326 * 19 17 16 39 39 H 1.09001 * 109.48934 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.06088 * 60.24748 * 20 19 17 41 41 H 1.08999 * 109.52728 * 300.74666 * 21 20 19 42 42 H 1.09000 * 109.52515 * 180.54575 * 21 20 19 43 43 H 1.09003 * 109.38820 * 180.22040 * 22 21 20 44 44 H 1.08996 * 109.39340 * 60.51200 * 22 21 20 45 45 H 0.97002 * 118.15126 * 323.74746 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6274 1.9739 -0.8575 5 6 3.5446 1.4434 -0.0849 6 1 4.1320 1.8142 0.7420 7 6 4.1713 0.9706 -1.2185 8 7 5.4621 0.7189 -1.1997 9 14 3.1871 0.6876 -2.7807 10 1 3.0837 1.9607 -3.5380 11 1 3.8691 -0.3322 -3.6175 12 1 1.8261 0.2091 -2.4285 13 7 1.6191 2.1106 1.2388 14 6 1.5383 3.5653 1.0511 15 1 2.2835 3.8772 0.3193 16 6 1.8127 4.2651 2.3845 17 6 1.4495 5.7501 2.2317 18 1 1.7630 6.3029 3.1174 19 6 2.1629 6.2994 0.9933 20 6 1.7412 7.7507 0.7552 21 6 0.2269 7.8213 0.5435 22 6 -0.4794 7.2973 1.7953 23 6 -0.0644 5.8544 2.0612 24 1 -0.5350 5.5403 2.9928 25 7 -0.5260 4.9744 0.9988 26 6 0.1700 3.9271 0.5495 27 8 -0.3296 3.2312 -0.3090 28 1 -0.3632 0.5860 0.8443 29 1 -0.3634 0.4381 -0.9295 30 1 -0.3633 -1.0241 0.0854 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 5.9029 0.3860 -1.9970 34 1 2.2363 1.8783 2.0025 35 1 2.8680 4.1691 2.6396 36 1 1.2026 3.8161 3.1683 37 1 3.2412 6.2452 1.1426 38 1 1.8880 5.7037 0.1229 39 1 2.2510 8.1373 -0.1273 40 1 2.0155 8.3483 1.6245 41 1 -0.0500 7.2088 -0.3145 42 1 -0.0681 8.8553 0.3646 43 1 -1.5585 7.3421 1.6474 44 1 -0.2068 7.9157 2.6504 45 1 -1.3881 5.1586 0.5941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:27 Heat of formation + Delta-G solvation = -53.709773 kcal Electronic energy + Delta-G solvation = -23984.068243 eV Core-core repulsion = 20807.216576 eV Total energy + Delta-G solvation = -3176.851667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81403 -37.84864 -36.22569 -34.07708 -33.51516 -31.95290 -30.96186 -29.71616 -27.86615 -26.00254 -24.01752 -22.71063 -22.39301 -21.79526 -20.51293 -19.53678 -18.03284 -16.95671 -16.50209 -15.87975 -15.55457 -15.31966 -14.62543 -14.33517 -14.14862 -13.70146 -13.51237 -13.44784 -13.07109 -12.76372 -12.62000 -12.31572 -12.27869 -12.07579 -11.57988 -11.47431 -11.40156 -11.26060 -10.92842 -10.75020 -10.63053 -10.46758 -10.27421 -10.21018 -10.01582 -9.67426 -9.39470 -9.12479 -9.05625 -8.71177 -8.40511 -7.34224 -6.10394 -4.07035 3.20458 3.35168 3.43150 3.52703 3.55081 4.46162 4.46953 4.51314 4.62599 4.93797 5.00440 5.03567 5.12727 5.24339 5.24756 5.31150 5.41515 5.44987 5.57567 5.67349 5.74937 5.81703 5.87539 5.98410 6.06333 6.14361 6.16000 6.24343 6.32002 6.33676 6.38324 6.44962 6.57731 6.94152 7.03308 7.13139 7.25117 7.38267 7.51977 7.63354 7.69249 8.05467 8.41136 8.53512 8.75930 8.94456 9.57534 11.02275 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.005933 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.155059 B = 4718.253229 C = 5146.319613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.189 3.811 4 H 0.041 0.959 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.080 3.920 8 N -0.894 5.894 9 Si 0.859 3.141 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.244 1.244 13 N -0.663 5.663 14 C 0.081 3.919 15 H 0.087 0.913 16 C -0.123 4.123 17 C -0.092 4.092 18 H 0.088 0.912 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.127 4.127 23 C 0.150 3.850 24 H 0.062 0.938 25 N -0.721 5.721 26 C 0.528 3.472 27 O -0.534 6.534 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.263 0.737 34 H 0.339 0.661 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 14.402 7.992 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.080 3.920 4 H 0.059 0.941 5 C -0.590 4.590 6 H 0.088 0.912 7 C -0.123 4.123 8 N -0.531 5.531 9 Si 0.686 3.314 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.168 1.168 13 N -0.295 5.295 14 C -0.033 4.033 15 H 0.104 0.896 16 C -0.161 4.161 17 C -0.111 4.111 18 H 0.106 0.894 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.165 4.165 23 C 0.044 3.956 24 H 0.080 0.920 25 N -0.376 5.376 26 C 0.315 3.685 27 O -0.409 6.409 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.553 13.764 7.410 18.861 hybrid contribution 0.364 0.214 -1.067 1.148 sum -10.189 13.978 6.343 18.423 Atomic orbital electron populations 1.21650 0.97615 0.98318 1.01668 1.21821 0.93723 0.98824 1.00453 1.19562 0.93284 0.91042 0.88100 0.94098 1.21741 0.90532 1.43534 1.03235 0.91189 1.24910 0.94624 0.93949 0.98855 1.69985 1.10004 1.44074 1.29071 0.87300 0.82228 0.78245 0.83589 1.20626 1.21631 1.16764 1.60492 1.56257 1.03386 1.09323 1.21242 0.92843 0.91914 0.97298 0.89598 1.22004 1.02676 0.93870 0.97537 1.21464 0.93539 0.96772 0.99357 0.89364 1.21721 1.00325 0.95911 0.98068 1.21524 0.95625 0.96881 1.01484 1.21511 0.95533 1.00622 0.98037 1.21768 1.00309 0.95329 0.99131 1.20562 0.94935 0.89727 0.90342 0.91958 1.45589 1.22593 1.29679 1.39700 1.20483 0.87674 0.78949 0.81443 1.90706 1.69304 1.49023 1.31857 0.92284 0.94073 0.95715 0.92867 0.93346 0.92766 0.84191 0.90474 0.90739 0.91104 0.91372 0.92005 0.92120 0.91718 0.92098 0.91617 0.90558 0.77470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 37.16 0.37 -2.52 16 2 C -0.11 -2.58 4.98 -26.73 -0.13 -2.72 16 3 C 0.19 4.59 1.08 -68.87 -0.07 4.52 16 4 H 0.04 1.09 5.53 -51.93 -0.29 0.81 16 5 C -0.55 -15.22 8.75 -34.44 -0.30 -15.52 16 6 H 0.07 2.04 7.94 -52.49 -0.42 1.63 16 7 C 0.08 2.31 5.36 -17.81 -0.10 2.21 16 8 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.86 22.12 25.88 -169.99 -4.40 17.72 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.24 -6.10 5.33 56.52 0.30 -5.80 16 13 N -0.66 -13.57 5.23 -102.41 -0.54 -14.11 16 14 C 0.08 1.44 1.91 -69.09 -0.13 1.31 16 15 H 0.09 1.76 6.26 -51.93 -0.33 1.43 16 16 C -0.12 -1.64 4.88 -26.36 -0.13 -1.76 16 17 C -0.09 -0.98 2.68 -90.38 -0.24 -1.22 16 18 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.12 -1.45 4.62 -26.67 -0.12 -1.57 16 20 C -0.12 -1.12 5.90 -26.70 -0.16 -1.28 16 21 C -0.12 -1.07 5.86 -26.70 -0.16 -1.23 16 22 C -0.13 -1.00 5.54 -27.01 -0.15 -1.15 16 23 C 0.15 1.51 2.89 -68.91 -0.20 1.31 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 N -0.72 -9.51 4.68 -55.37 -0.26 -9.77 16 26 C 0.53 9.44 6.60 -11.80 -0.08 9.36 16 27 O -0.53 -11.83 16.15 5.56 0.09 -11.74 16 28 H 0.06 1.26 7.57 -51.93 -0.39 0.86 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.31 4.70 -51.93 -0.24 1.07 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.34 6.70 7.96 -39.29 -0.31 6.38 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.99 5.48 -51.93 -0.28 0.71 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.39 4.76 8.68 -40.82 -0.35 4.41 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -32.05 332.45 -8.68 -40.74 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.76 Total: 8.86 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.61 Total: -10.27 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.02 Total: -50.31 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.40 Total: 17.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.05 -8.68 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.974 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds