Wall clock time and date at job start Tue Mar 31 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47394 * 2 1 4 4 H 1.09000 * 109.47733 * 303.43622 * 3 2 1 5 5 C 1.50690 * 109.47599 * 183.42655 * 3 2 1 6 6 H 1.08002 * 120.00630 * 245.51904 * 5 3 2 7 7 C 1.37885 * 119.99512 * 65.51628 * 5 3 2 8 8 N 1.31523 * 119.99641 * 193.60990 * 7 5 3 9 9 Si 1.86793 * 120.00061 * 13.60735 * 7 5 3 10 10 H 1.48501 * 109.47017 * 84.87344 * 9 7 5 11 11 H 1.48502 * 109.47090 * 204.87041 * 9 7 5 12 12 H 1.48499 * 109.47333 * 324.86843 * 9 7 5 13 13 N 1.46908 * 109.46637 * 63.42871 * 3 2 1 14 14 C 1.46901 * 111.00028 * 205.29089 * 13 3 2 15 15 H 1.09004 * 109.36165 * 328.46276 * 14 13 3 16 16 C 1.53063 * 109.36138 * 208.73462 * 14 13 3 17 17 C 1.53648 * 108.23459 * 191.15824 * 16 14 13 18 18 H 1.09003 * 109.96224 * 187.85651 * 17 16 14 19 19 C 1.53110 * 108.47844 * 308.13417 * 17 16 14 20 20 C 1.53000 * 109.74078 * 175.91361 * 19 17 16 21 21 C 1.53069 * 109.75044 * 300.28410 * 20 19 17 22 22 C 1.52982 * 109.13751 * 60.64765 * 21 20 19 23 23 C 1.52476 * 109.94715 * 300.36489 * 22 21 20 24 24 H 1.08999 * 107.70897 * 176.33823 * 23 22 21 25 25 N 1.45469 * 111.02232 * 294.66684 * 23 22 21 26 26 C 1.33531 * 123.69765 * 143.75603 * 25 23 22 27 27 O 1.21278 * 118.26321 * 177.46488 * 26 25 23 28 28 H 1.09003 * 109.46411 * 304.76159 * 1 2 3 29 29 H 1.08991 * 109.47570 * 64.76364 * 1 2 3 30 30 H 1.09001 * 109.46999 * 184.76562 * 1 2 3 31 31 H 1.09005 * 109.46726 * 240.00471 * 2 1 3 32 32 H 1.08996 * 109.47622 * 120.00968 * 2 1 3 33 33 H 0.96997 * 119.99716 * 179.97438 * 8 7 5 34 34 H 1.00896 * 110.99696 * 81.33793 * 13 3 2 35 35 H 1.08995 * 109.71216 * 71.47445 * 16 14 13 36 36 H 1.08999 * 109.74267 * 310.85998 * 16 14 13 37 37 H 1.08994 * 109.41537 * 296.62492 * 19 17 16 38 38 H 1.09000 * 109.41345 * 56.43326 * 19 17 16 39 39 H 1.09001 * 109.48934 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.06088 * 60.24748 * 20 19 17 41 41 H 1.08999 * 109.52728 * 300.74666 * 21 20 19 42 42 H 1.09000 * 109.52515 * 180.54575 * 21 20 19 43 43 H 1.09003 * 109.38820 * 180.22040 * 22 21 20 44 44 H 1.08996 * 109.39340 * 60.51200 * 22 21 20 45 45 H 0.97002 * 118.15126 * 323.74746 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6274 1.9739 -0.8575 5 6 3.5446 1.4434 -0.0849 6 1 4.1320 1.8142 0.7420 7 6 4.1713 0.9706 -1.2185 8 7 5.4621 0.7189 -1.1997 9 14 3.1871 0.6876 -2.7807 10 1 3.0837 1.9607 -3.5380 11 1 3.8691 -0.3322 -3.6175 12 1 1.8261 0.2091 -2.4285 13 7 1.6191 2.1106 1.2388 14 6 1.5383 3.5653 1.0511 15 1 2.2835 3.8772 0.3193 16 6 1.8127 4.2651 2.3845 17 6 1.4495 5.7501 2.2317 18 1 1.7630 6.3029 3.1174 19 6 2.1629 6.2994 0.9933 20 6 1.7412 7.7507 0.7552 21 6 0.2269 7.8213 0.5435 22 6 -0.4794 7.2973 1.7953 23 6 -0.0644 5.8544 2.0612 24 1 -0.5350 5.5403 2.9928 25 7 -0.5260 4.9744 0.9988 26 6 0.1700 3.9271 0.5495 27 8 -0.3296 3.2312 -0.3090 28 1 -0.3632 0.5860 0.8443 29 1 -0.3634 0.4381 -0.9295 30 1 -0.3633 -1.0241 0.0854 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 5.9029 0.3860 -1.9970 34 1 2.2363 1.8783 2.0025 35 1 2.8680 4.1691 2.6396 36 1 1.2026 3.8161 3.1683 37 1 3.2412 6.2452 1.1426 38 1 1.8880 5.7037 0.1229 39 1 2.2510 8.1373 -0.1273 40 1 2.0155 8.3483 1.6245 41 1 -0.0500 7.2088 -0.3145 42 1 -0.0681 8.8553 0.3646 43 1 -1.5585 7.3421 1.6474 44 1 -0.2068 7.9157 2.6504 45 1 -1.3881 5.1586 0.5941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:26 Heat of formation + Delta-G solvation = -76.938861 kcal Electronic energy + Delta-G solvation = -23985.075532 eV Core-core repulsion = 20807.216576 eV Total energy + Delta-G solvation = -3177.858956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95814 -39.06832 -37.95632 -35.34788 -34.76561 -34.00770 -32.35322 -30.64804 -29.48189 -27.64504 -25.25181 -24.32449 -23.50662 -22.94880 -21.58724 -21.30024 -19.34942 -18.87458 -17.76252 -17.19012 -16.94166 -16.48977 -16.34572 -15.51766 -15.30622 -15.27644 -14.90483 -14.72355 -14.61529 -14.15585 -14.07878 -13.55721 -13.51718 -13.40805 -13.21123 -13.03851 -12.63852 -12.60244 -12.44980 -12.23104 -12.19314 -11.83245 -11.55733 -11.41107 -11.29446 -11.20088 -11.10905 -10.99760 -10.67274 -10.51555 -9.82675 -9.10443 -8.37469 -6.35820 1.25642 1.30529 1.43382 1.79454 2.29458 2.40794 2.98937 3.46396 3.63215 3.66782 3.80232 3.97279 4.07951 4.22409 4.33499 4.42363 4.45303 4.49669 4.56248 4.57106 4.58361 4.67880 4.76177 4.91737 5.00259 5.01187 5.03337 5.07935 5.16623 5.20430 5.26412 5.30328 5.33412 5.39537 5.43616 5.49031 5.52322 5.54672 5.70747 6.02140 6.08735 6.34954 6.43500 6.65329 6.82412 7.32005 7.43718 8.78245 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.005933 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.155059 B = 4718.253229 C = 5146.319613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.200 3.800 4 H 0.017 0.983 5 C -0.545 4.545 6 H 0.044 0.956 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.282 1.282 12 H -0.234 1.234 13 N -0.658 5.658 14 C 0.079 3.921 15 H 0.051 0.949 16 C -0.116 4.116 17 C -0.085 4.085 18 H 0.126 0.874 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.119 4.119 23 C 0.142 3.858 24 H 0.087 0.913 25 N -0.704 5.704 26 C 0.527 3.473 27 O -0.586 6.586 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.342 0.658 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 16.167 9.904 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.090 3.910 4 H 0.035 0.965 5 C -0.584 4.584 6 H 0.062 0.938 7 C -0.167 4.167 8 N -0.574 5.574 9 Si 0.735 3.265 10 H -0.211 1.211 11 H -0.208 1.208 12 H -0.158 1.158 13 N -0.289 5.289 14 C -0.035 4.035 15 H 0.069 0.931 16 C -0.154 4.154 17 C -0.104 4.104 18 H 0.144 0.856 19 C -0.162 4.162 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.157 4.157 23 C 0.038 3.962 24 H 0.105 0.895 25 N -0.356 5.356 26 C 0.313 3.687 27 O -0.465 6.465 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.580 15.579 9.364 22.105 hybrid contribution 1.032 -0.235 -1.589 1.909 sum -11.548 15.344 7.775 20.718 Atomic orbital electron populations 1.21491 0.95594 0.99894 1.00832 1.21771 0.95466 0.97750 0.99975 1.19302 0.90699 0.91913 0.89055 0.96474 1.22012 0.92329 1.41916 1.02100 0.93789 1.25565 0.95365 0.94290 1.01523 1.70078 1.11437 1.45909 1.29948 0.86482 0.81540 0.78010 0.80424 1.21101 1.20783 1.15760 1.60428 1.55614 1.05194 1.07650 1.21265 0.92472 0.90551 0.99190 0.93094 1.21989 1.02929 0.95593 0.94880 1.21525 0.93987 0.94809 1.00062 0.85620 1.21705 1.00060 0.97201 0.97281 1.21512 0.96179 0.95214 1.02224 1.21520 0.95027 1.01348 0.97869 1.21769 1.01001 0.93499 0.99416 1.20933 0.94503 0.90781 0.89998 0.89542 1.45488 1.22195 1.28419 1.39532 1.20385 0.87599 0.79694 0.80972 1.90675 1.70412 1.51343 1.34119 0.92300 0.95573 0.92942 0.94200 0.92927 0.92599 0.83886 0.90713 0.89292 0.92003 0.95223 0.92879 0.89630 0.94308 0.90247 0.90190 0.87636 0.76607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.85 71.98 0.71 -4.34 16 2 C -0.11 -5.23 4.98 30.59 0.15 -5.07 16 3 C 0.20 9.96 1.08 44.16 0.05 10.01 16 4 H 0.02 0.95 5.53 -2.39 -0.01 0.94 16 5 C -0.54 -31.11 8.75 25.60 0.22 -30.88 16 6 H 0.04 2.68 7.94 -2.91 -0.02 2.66 16 7 C 0.03 1.90 5.36 84.66 0.45 2.35 16 8 N -0.93 -58.47 13.96 21.45 0.30 -58.18 16 9 Si 0.91 46.82 25.88 68.60 1.78 48.60 16 10 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.23 -11.61 5.33 99.48 0.53 -11.08 16 13 N -0.66 -27.36 5.23 -477.92 -2.50 -29.86 16 14 C 0.08 2.87 1.91 44.02 0.08 2.96 16 15 H 0.05 2.23 6.26 -2.38 -0.01 2.22 16 16 C -0.12 -2.94 4.88 30.83 0.15 -2.79 16 17 C -0.08 -1.58 2.68 -10.64 -0.03 -1.60 16 18 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 19 C -0.12 -2.86 4.62 30.63 0.14 -2.72 16 20 C -0.11 -1.94 5.90 30.62 0.18 -1.76 16 21 C -0.12 -1.82 5.86 30.61 0.18 -1.64 16 22 C -0.12 -1.34 5.54 30.41 0.17 -1.17 16 23 C 0.14 2.36 2.89 44.91 0.13 2.49 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 N -0.70 -17.53 4.68 -448.18 -2.10 -19.63 16 26 C 0.53 18.97 6.60 87.68 0.58 19.54 16 27 O -0.59 -26.58 16.15 -3.02 -0.05 -26.63 16 28 H 0.06 2.44 7.57 -2.39 -0.02 2.43 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.96 4.70 -2.38 -0.01 1.95 16 32 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.34 13.68 7.96 -89.70 -0.71 12.96 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.03 0.90 5.48 -2.39 -0.01 0.89 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 0.79 7.87 -2.39 -0.02 0.77 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.40 9.09 8.68 -92.71 -0.80 8.28 16 Total: -1.00 -72.93 332.45 -0.11 -73.04 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.71 Total: 27.30 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.17 Total: -14.63 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.30 Total: -107.67 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.78 Total: 48.60 kcal Total: -72.93 -0.11 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.902 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds