Wall clock time and date at job start Tue Mar 31 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47135 * 2 1 4 4 H 1.09000 * 109.46551 * 305.88407 * 3 2 1 5 5 C 1.50694 * 109.46890 * 185.88460 * 3 2 1 6 6 H 1.08000 * 119.99764 * 242.59220 * 5 3 2 7 7 C 1.37874 * 120.00273 * 62.60407 * 5 3 2 8 8 N 1.31519 * 119.99963 * 194.10432 * 7 5 3 9 9 Si 1.86803 * 120.00211 * 14.09937 * 7 5 3 10 10 H 1.48499 * 109.46924 * 94.94031 * 9 7 5 11 11 H 1.48499 * 109.47335 * 214.94793 * 9 7 5 12 12 H 1.48505 * 109.46967 * 334.94647 * 9 7 5 13 13 N 1.46900 * 109.47023 * 65.88319 * 3 2 1 14 14 C 1.46903 * 110.99872 * 205.71175 * 13 3 2 15 15 H 1.09004 * 109.30079 * 327.97735 * 14 13 3 16 16 C 1.53175 * 109.30314 * 208.38645 * 14 13 3 17 17 C 1.52938 * 108.22147 * 286.56890 * 16 14 13 18 18 H 1.09004 * 109.43216 * 51.92509 * 17 16 14 19 19 C 1.52764 * 110.90147 * 172.74987 * 17 16 14 20 20 C 1.53203 * 108.87614 * 180.55284 * 19 17 16 21 21 C 1.52890 * 109.96729 * 300.58053 * 20 19 17 22 22 C 1.53196 * 109.87822 * 58.96817 * 21 20 19 23 23 C 1.52708 * 108.89261 * 300.53122 * 22 21 20 24 24 H 1.09001 * 108.10971 * 302.95938 * 23 22 21 25 25 N 1.45377 * 111.70258 * 183.32939 * 23 22 21 26 26 C 1.33625 * 123.18484 * 215.93664 * 25 23 22 27 27 O 1.21284 * 118.05258 * 183.76575 * 26 25 23 28 28 H 1.08998 * 109.47324 * 63.31968 * 1 2 3 29 29 H 1.08999 * 109.47148 * 183.31828 * 1 2 3 30 30 H 1.09002 * 109.47071 * 303.31595 * 1 2 3 31 31 H 1.09003 * 109.47479 * 239.99900 * 2 1 3 32 32 H 1.08997 * 109.47685 * 119.99737 * 2 1 3 33 33 H 0.97007 * 119.99877 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00016 * 329.66685 * 13 3 2 35 35 H 1.08999 * 109.71443 * 166.88932 * 16 14 13 36 36 H 1.08995 * 109.71576 * 46.24833 * 16 14 13 37 37 H 1.09004 * 109.56907 * 60.74083 * 19 17 16 38 38 H 1.09003 * 109.67076 * 300.43024 * 19 17 16 39 39 H 1.09000 * 109.38421 * 180.42814 * 20 19 17 40 40 H 1.08994 * 109.30304 * 60.68335 * 20 19 17 41 41 H 1.09003 * 109.38182 * 179.06744 * 21 20 19 42 42 H 1.09002 * 109.39067 * 298.86607 * 21 20 19 43 43 H 1.09004 * 109.56541 * 60.44789 * 22 21 20 44 44 H 1.08998 * 109.56664 * 180.79937 * 22 21 20 45 45 H 0.97003 * 118.40352 * 35.94187 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5931 1.9858 -0.8326 5 6 3.5399 1.4450 -0.1457 6 1 4.1583 1.8478 0.6428 7 6 4.1227 0.9333 -1.2856 8 7 5.4126 0.6773 -1.3066 9 14 3.0802 0.6033 -2.8002 10 1 3.1512 1.7716 -3.7140 11 1 3.5905 -0.6036 -3.4989 12 1 1.6702 0.3796 -2.3914 13 7 1.6697 2.0928 1.2641 14 6 1.5720 3.5492 1.0981 15 1 2.2890 3.8748 0.3443 16 6 1.8922 4.2334 2.4306 17 6 0.7049 4.0261 3.3720 18 1 0.4565 2.9656 3.4144 19 6 1.0296 4.5287 4.7776 20 6 -0.1824 4.2867 5.6829 21 6 -1.4016 5.0265 5.1318 22 6 -1.7078 4.5406 3.7116 23 6 -0.4924 4.8048 2.8257 24 1 -0.2665 5.8703 2.8694 25 7 -0.7452 4.4366 1.4423 26 6 0.1860 3.9050 0.6450 27 8 -0.1061 3.6972 -0.5136 28 1 -0.3634 0.4614 -0.9182 29 1 -0.3633 -1.0259 0.0595 30 1 -0.3633 0.5645 0.8588 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8225 0.3169 -2.1085 34 1 0.8092 1.7119 1.6282 35 1 2.0506 5.2994 2.2678 36 1 2.7879 3.7902 2.8656 37 1 1.2514 5.5953 4.7418 38 1 1.8918 3.9894 5.1700 39 1 0.0378 4.6495 6.6869 40 1 -0.3949 3.2184 5.7226 41 1 -2.2617 4.8346 5.7734 42 1 -1.1968 6.0970 5.1117 43 1 -1.9227 3.4721 3.7298 44 1 -2.5688 5.0811 3.3185 45 1 -1.6331 4.5842 1.0804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:29 Heat of formation + Delta-G solvation = -55.807609 kcal Electronic energy + Delta-G solvation = -23744.656649 eV Core-core repulsion = 20567.714013 eV Total energy + Delta-G solvation = -3176.942636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71650 -38.23452 -36.39850 -34.48489 -33.56524 -31.97688 -31.02701 -29.41410 -28.12066 -26.49997 -23.48019 -22.73127 -22.42554 -22.19214 -20.31557 -19.70022 -18.62693 -16.96646 -16.74635 -16.21455 -15.36875 -15.06987 -14.71935 -14.44715 -14.32891 -14.13252 -13.64737 -13.55832 -13.07952 -12.77153 -12.61392 -12.60094 -12.22225 -11.86875 -11.63957 -11.57205 -11.52133 -11.47587 -10.96450 -10.77959 -10.65375 -10.53419 -10.32330 -10.31393 -10.20298 -9.84983 -9.59964 -9.35041 -9.08704 -8.89532 -8.41513 -7.41613 -6.00226 -3.92835 2.93090 3.36845 3.41667 3.46286 3.53755 4.43288 4.45971 4.52000 4.63303 4.87628 4.91239 4.98318 5.09620 5.20197 5.24365 5.27002 5.33090 5.34289 5.49276 5.66296 5.77236 5.81850 5.87262 5.91752 5.93391 5.95021 5.99299 6.07762 6.10959 6.14454 6.30964 6.42141 6.47434 6.59761 6.77042 6.81837 6.98081 7.02455 7.27865 7.52242 7.82301 7.89679 8.15928 8.50194 8.76460 9.13561 9.66735 11.12723 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005230 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.958243 B = 5352.655578 C = 5657.944131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.183 3.817 4 H 0.018 0.982 5 C -0.500 4.500 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.642 5.642 14 C 0.083 3.917 15 H 0.116 0.884 16 C -0.107 4.107 17 C -0.097 4.097 18 H 0.082 0.918 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.129 4.129 23 C 0.143 3.857 24 H 0.065 0.935 25 N -0.720 5.720 26 C 0.488 3.512 27 O -0.549 6.549 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.261 0.739 34 H 0.319 0.681 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 8.672 13.747 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.075 3.925 4 H 0.036 0.964 5 C -0.538 4.538 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.274 5.274 14 C -0.030 4.030 15 H 0.134 0.866 16 C -0.145 4.145 17 C -0.116 4.116 18 H 0.100 0.900 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.167 4.167 23 C 0.038 3.962 24 H 0.083 0.917 25 N -0.373 5.373 26 C 0.273 3.727 27 O -0.424 6.424 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.873 8.456 13.312 20.358 hybrid contribution -1.750 -0.078 -1.550 2.339 sum -14.623 8.379 11.762 20.552 Atomic orbital electron populations 1.21881 0.98601 0.99942 1.00591 1.22137 0.92474 1.00088 1.01998 1.19747 0.96887 0.89749 0.86122 0.96417 1.20939 0.88963 1.40055 1.03870 0.90220 1.24864 0.94679 0.94841 0.98432 1.69967 1.10906 1.44121 1.28414 0.87340 0.82479 0.77760 0.84075 1.20877 1.21535 1.17440 1.60985 1.35702 0.99493 1.31227 1.21680 0.90907 0.91920 0.98507 0.86649 1.21753 0.98729 0.99676 0.94308 1.21385 0.94467 1.00672 0.95037 0.89952 1.21509 0.98016 1.01380 0.93742 1.21589 0.94845 1.00810 0.98757 1.21475 0.98261 1.00234 0.95216 1.21854 0.97208 1.02254 0.95363 1.20824 0.95746 0.98830 0.80803 0.91671 1.45708 1.14493 1.64809 1.12293 1.21900 0.89083 0.76044 0.85633 1.90742 1.81088 1.52535 1.18075 0.93420 0.93861 0.94107 0.91920 0.92009 0.92871 0.86254 0.91850 0.89111 0.91804 0.90870 0.91894 0.91776 0.91755 0.91827 0.91203 0.91673 0.77550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.80 37.16 0.36 -2.53 16 2 C -0.13 -2.87 4.69 -26.73 -0.13 -3.00 16 3 C 0.18 4.40 1.36 -68.86 -0.09 4.31 16 4 H 0.02 0.48 5.57 -51.93 -0.29 0.19 16 5 C -0.50 -14.09 9.01 -34.44 -0.31 -14.40 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.14 5.34 -17.82 -0.10 2.05 16 8 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.86 22.14 25.70 -169.99 -4.37 17.77 16 10 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.25 -6.22 5.34 56.52 0.30 -5.92 16 13 N -0.64 -12.87 5.81 -102.38 -0.60 -13.46 16 14 C 0.08 1.51 2.52 -69.07 -0.17 1.34 16 15 H 0.12 2.44 7.62 -51.93 -0.40 2.05 16 16 C -0.11 -1.48 5.05 -26.67 -0.13 -1.61 16 17 C -0.10 -1.08 1.91 -90.82 -0.17 -1.25 16 18 H 0.08 1.03 7.30 -51.93 -0.38 0.65 16 19 C -0.11 -0.96 5.33 -26.75 -0.14 -1.10 16 20 C -0.12 -0.92 5.90 -26.68 -0.16 -1.08 16 21 C -0.11 -0.79 5.91 -26.69 -0.16 -0.95 16 22 C -0.13 -1.05 5.59 -26.78 -0.15 -1.20 16 23 C 0.14 1.48 2.71 -68.73 -0.19 1.29 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 N -0.72 -9.49 5.24 -55.21 -0.29 -9.78 16 26 C 0.49 8.64 6.92 -11.79 -0.08 8.56 16 27 O -0.55 -12.12 16.70 5.55 0.09 -12.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.71 6.38 -51.93 -0.33 0.38 16 31 H 0.06 1.49 4.60 -51.93 -0.24 1.25 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.32 5.88 5.57 -39.29 -0.22 5.66 16 35 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.39 4.71 8.71 -40.82 -0.36 4.35 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -32.33 335.12 -8.74 -41.07 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.78 Total: 7.79 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.62 Total: -9.58 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.11 Total: -50.07 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.37 Total: 17.77 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.33 -8.74 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.734 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds