Wall clock time and date at job start Tue Mar 31 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47135 * 2 1 4 4 H 1.09000 * 109.46551 * 305.88407 * 3 2 1 5 5 C 1.50694 * 109.46890 * 185.88460 * 3 2 1 6 6 H 1.08000 * 119.99764 * 242.59220 * 5 3 2 7 7 C 1.37874 * 120.00273 * 62.60407 * 5 3 2 8 8 N 1.31519 * 119.99963 * 194.10432 * 7 5 3 9 9 Si 1.86803 * 120.00211 * 14.09937 * 7 5 3 10 10 H 1.48499 * 109.46924 * 94.94031 * 9 7 5 11 11 H 1.48499 * 109.47335 * 214.94793 * 9 7 5 12 12 H 1.48505 * 109.46967 * 334.94647 * 9 7 5 13 13 N 1.46900 * 109.47023 * 65.88319 * 3 2 1 14 14 C 1.46903 * 110.99872 * 205.71175 * 13 3 2 15 15 H 1.09004 * 109.30079 * 327.97735 * 14 13 3 16 16 C 1.53175 * 109.30314 * 208.38645 * 14 13 3 17 17 C 1.52938 * 108.22147 * 286.56890 * 16 14 13 18 18 H 1.09004 * 109.43216 * 51.92509 * 17 16 14 19 19 C 1.52764 * 110.90147 * 172.74987 * 17 16 14 20 20 C 1.53203 * 108.87614 * 180.55284 * 19 17 16 21 21 C 1.52890 * 109.96729 * 300.58053 * 20 19 17 22 22 C 1.53196 * 109.87822 * 58.96817 * 21 20 19 23 23 C 1.52708 * 108.89261 * 300.53122 * 22 21 20 24 24 H 1.09001 * 108.10971 * 302.95938 * 23 22 21 25 25 N 1.45377 * 111.70258 * 183.32939 * 23 22 21 26 26 C 1.33625 * 123.18484 * 215.93664 * 25 23 22 27 27 O 1.21284 * 118.05258 * 183.76575 * 26 25 23 28 28 H 1.08998 * 109.47324 * 63.31968 * 1 2 3 29 29 H 1.08999 * 109.47148 * 183.31828 * 1 2 3 30 30 H 1.09002 * 109.47071 * 303.31595 * 1 2 3 31 31 H 1.09003 * 109.47479 * 239.99900 * 2 1 3 32 32 H 1.08997 * 109.47685 * 119.99737 * 2 1 3 33 33 H 0.97007 * 119.99877 * 179.97438 * 8 7 5 34 34 H 1.00901 * 111.00016 * 329.66685 * 13 3 2 35 35 H 1.08999 * 109.71443 * 166.88932 * 16 14 13 36 36 H 1.08995 * 109.71576 * 46.24833 * 16 14 13 37 37 H 1.09004 * 109.56907 * 60.74083 * 19 17 16 38 38 H 1.09003 * 109.67076 * 300.43024 * 19 17 16 39 39 H 1.09000 * 109.38421 * 180.42814 * 20 19 17 40 40 H 1.08994 * 109.30304 * 60.68335 * 20 19 17 41 41 H 1.09003 * 109.38182 * 179.06744 * 21 20 19 42 42 H 1.09002 * 109.39067 * 298.86607 * 21 20 19 43 43 H 1.09004 * 109.56541 * 60.44789 * 22 21 20 44 44 H 1.08998 * 109.56664 * 180.79937 * 22 21 20 45 45 H 0.97003 * 118.40352 * 35.94187 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5931 1.9858 -0.8326 5 6 3.5399 1.4450 -0.1457 6 1 4.1583 1.8478 0.6428 7 6 4.1227 0.9333 -1.2856 8 7 5.4126 0.6773 -1.3066 9 14 3.0802 0.6033 -2.8002 10 1 3.1512 1.7716 -3.7140 11 1 3.5905 -0.6036 -3.4989 12 1 1.6702 0.3796 -2.3914 13 7 1.6697 2.0928 1.2641 14 6 1.5720 3.5492 1.0981 15 1 2.2890 3.8748 0.3443 16 6 1.8922 4.2334 2.4306 17 6 0.7049 4.0261 3.3720 18 1 0.4565 2.9656 3.4144 19 6 1.0296 4.5287 4.7776 20 6 -0.1824 4.2867 5.6829 21 6 -1.4016 5.0265 5.1318 22 6 -1.7078 4.5406 3.7116 23 6 -0.4924 4.8048 2.8257 24 1 -0.2665 5.8703 2.8694 25 7 -0.7452 4.4366 1.4423 26 6 0.1860 3.9050 0.6450 27 8 -0.1061 3.6972 -0.5136 28 1 -0.3634 0.4614 -0.9182 29 1 -0.3633 -1.0259 0.0595 30 1 -0.3633 0.5645 0.8588 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.8225 0.3169 -2.1085 34 1 0.8092 1.7119 1.6282 35 1 2.0506 5.2994 2.2678 36 1 2.7879 3.7902 2.8656 37 1 1.2514 5.5953 4.7418 38 1 1.8918 3.9894 5.1700 39 1 0.0378 4.6495 6.6869 40 1 -0.3949 3.2184 5.7226 41 1 -2.2617 4.8346 5.7734 42 1 -1.1968 6.0970 5.1117 43 1 -1.9227 3.4721 3.7298 44 1 -2.5688 5.0811 3.3185 45 1 -1.6331 4.5842 1.0804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:29 Heat of formation + Delta-G solvation = -79.547882 kcal Electronic energy + Delta-G solvation = -23745.686104 eV Core-core repulsion = 20567.714013 eV Total energy + Delta-G solvation = -3177.972092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93156 -39.33055 -38.12641 -35.60113 -34.95698 -34.03872 -32.24780 -30.30834 -29.63334 -28.22397 -24.80348 -24.19234 -23.58419 -23.19314 -21.72809 -20.88293 -19.84915 -18.88180 -18.08154 -17.64896 -17.00092 -16.31745 -16.18708 -15.76369 -15.50976 -15.23252 -14.97349 -14.84634 -14.55910 -14.18302 -14.09272 -13.68655 -13.63068 -13.44537 -13.01611 -12.76965 -12.63911 -12.60120 -12.36384 -12.32218 -12.18342 -11.87444 -11.68237 -11.51730 -11.34780 -11.25426 -11.16829 -11.11350 -10.70706 -10.65431 -10.04449 -9.14566 -8.29342 -6.24640 1.27040 1.33922 1.44326 1.49689 2.25211 2.33178 3.03946 3.36356 3.48720 3.66210 3.76071 3.88122 4.20091 4.21704 4.25962 4.31243 4.33060 4.43868 4.49230 4.50895 4.57214 4.62931 4.71656 4.86548 4.89652 5.01109 5.03777 5.06689 5.11156 5.18737 5.23038 5.26344 5.34022 5.36953 5.38679 5.45026 5.46745 5.64388 5.75084 5.86291 5.99517 6.25535 6.37156 6.73890 6.82116 7.18105 7.37976 8.87389 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005230 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.958243 B = 5352.655578 C = 5657.944131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.191 3.809 4 H -0.004 1.004 5 C -0.498 4.498 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.939 5.939 9 Si 0.913 3.087 10 H -0.289 1.289 11 H -0.280 1.280 12 H -0.235 1.235 13 N -0.641 5.641 14 C 0.080 3.920 15 H 0.075 0.925 16 C -0.099 4.099 17 C -0.091 4.091 18 H 0.069 0.931 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.123 4.123 23 C 0.139 3.861 24 H 0.083 0.917 25 N -0.700 5.700 26 C 0.492 3.508 27 O -0.598 6.598 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.331 0.669 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 9.380 15.608 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.082 3.918 4 H 0.013 0.987 5 C -0.537 4.537 6 H 0.060 0.940 7 C -0.174 4.174 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.216 1.216 11 H -0.206 1.206 12 H -0.159 1.159 13 N -0.273 5.273 14 C -0.033 4.033 15 H 0.093 0.907 16 C -0.137 4.137 17 C -0.110 4.110 18 H 0.088 0.912 19 C -0.142 4.142 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.161 4.161 23 C 0.035 3.965 24 H 0.101 0.899 25 N -0.351 5.351 26 C 0.277 3.723 27 O -0.479 6.479 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.817 9.187 15.241 23.809 hybrid contribution -0.797 -0.202 -2.008 2.170 sum -16.614 8.985 13.232 23.062 Atomic orbital electron populations 1.21768 0.95545 1.02045 1.00573 1.22028 0.95185 0.98138 1.01389 1.19471 0.93942 0.91246 0.87141 0.98674 1.21166 0.91126 1.38703 1.02656 0.93957 1.25543 0.95642 0.95106 1.01130 1.70078 1.12624 1.45939 1.29357 0.86416 0.81799 0.77478 0.80413 1.21582 1.20576 1.15876 1.60839 1.36641 1.00647 1.29212 1.21637 0.90867 0.90981 0.99837 0.90721 1.21698 0.99672 0.99885 0.92486 1.21339 0.93391 1.00327 0.95928 0.91236 1.21483 0.98695 1.01919 0.92127 1.21582 0.94370 1.00732 0.99113 1.21475 0.98389 1.00653 0.94247 1.21836 0.96310 1.02285 0.95652 1.21118 0.96692 0.99504 0.79231 0.89887 1.45585 1.13894 1.62468 1.13135 1.21593 0.89253 0.76211 0.85255 1.90718 1.81835 1.55098 1.20203 0.94743 0.90843 0.92633 0.93444 0.91745 0.92689 0.84905 0.90219 0.90411 0.90544 0.91435 0.90486 0.92363 0.90324 0.90747 0.91786 0.90110 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.80 71.98 0.71 -4.39 16 2 C -0.13 -5.70 4.69 30.60 0.14 -5.55 16 3 C 0.19 9.39 1.36 44.17 0.06 9.45 16 4 H 0.00 -0.24 5.57 -2.39 -0.01 -0.25 16 5 C -0.50 -29.26 9.01 25.60 0.23 -29.03 16 6 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 7 C 0.02 1.42 5.34 84.65 0.45 1.87 16 8 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 9 Si 0.91 46.90 25.70 68.60 1.76 48.66 16 10 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 12 H -0.24 -11.44 5.34 99.48 0.53 -10.91 16 13 N -0.64 -26.12 5.81 -477.83 -2.78 -28.90 16 14 C 0.08 2.99 2.52 44.04 0.11 3.10 16 15 H 0.07 3.38 7.62 -2.38 -0.02 3.36 16 16 C -0.10 -2.73 5.05 30.63 0.15 -2.58 16 17 C -0.09 -1.85 1.91 -10.92 -0.02 -1.88 16 18 H 0.07 1.63 7.30 -2.38 -0.02 1.61 16 19 C -0.10 -1.57 5.33 30.58 0.16 -1.40 16 20 C -0.12 -1.39 5.90 30.63 0.18 -1.21 16 21 C -0.11 -1.04 5.91 30.62 0.18 -0.86 16 22 C -0.12 -1.52 5.59 30.56 0.17 -1.35 16 23 C 0.14 2.44 2.71 45.08 0.12 2.56 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 25 N -0.70 -17.08 5.24 -447.61 -2.34 -19.43 16 26 C 0.49 17.30 6.92 87.64 0.61 17.91 16 27 O -0.60 -26.76 16.70 -3.04 -0.05 -26.81 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.81 6.38 -2.39 -0.02 1.79 16 31 H 0.05 2.22 4.60 -2.39 -0.01 2.21 16 32 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 34 H 0.33 12.03 5.57 -89.69 -0.50 11.53 16 35 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.40 8.70 8.71 -92.71 -0.81 7.90 16 Total: -1.00 -73.52 335.12 -0.35 -73.87 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.50 Total: 25.57 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 3.26 Total: -13.37 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.82 Total: -107.93 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.76 Total: 48.66 kcal Total: -73.52 -0.35 -73.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.678 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds