Wall clock time and date at job start Tue Mar 31 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47084 * 2 1 4 4 H 1.09006 * 109.47494 * 305.59459 * 3 2 1 5 5 C 1.50695 * 109.47225 * 185.59563 * 3 2 1 6 6 H 1.08003 * 120.00140 * 239.99976 * 5 3 2 7 7 C 1.37872 * 120.00337 * 59.99868 * 5 3 2 8 8 N 1.31524 * 119.99910 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00557 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46951 * 60.00395 * 9 7 5 11 11 H 1.48496 * 109.47479 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47404 * 300.00601 * 9 7 5 13 13 N 1.46901 * 109.47415 * 65.59417 * 3 2 1 14 14 C 1.46904 * 111.00370 * 203.53718 * 13 3 2 15 15 H 1.09001 * 109.29765 * 330.29456 * 14 13 3 16 16 C 1.53173 * 109.30139 * 210.70464 * 14 13 3 17 17 C 1.52940 * 108.21838 * 192.82005 * 16 14 13 18 18 H 1.09000 * 109.42836 * 307.96189 * 17 16 14 19 19 C 1.52766 * 110.90218 * 187.27525 * 17 16 14 20 20 C 1.53198 * 108.87182 * 179.44126 * 19 17 16 21 21 C 1.52891 * 109.96445 * 59.43080 * 20 19 17 22 22 C 1.53202 * 109.95561 * 301.07257 * 21 20 19 23 23 C 1.52710 * 108.89802 * 59.32141 * 22 21 20 24 24 H 1.08995 * 108.04431 * 57.20969 * 23 22 21 25 25 N 1.45377 * 111.69537 * 176.79586 * 23 22 21 26 26 C 1.33631 * 123.18270 * 144.41740 * 25 23 22 27 27 O 1.21288 * 118.04679 * 175.94063 * 26 25 23 28 28 H 1.08999 * 109.47026 * 53.74222 * 1 2 3 29 29 H 1.08999 * 109.46959 * 173.74128 * 1 2 3 30 30 H 1.08994 * 109.46755 * 293.73911 * 1 2 3 31 31 H 1.09000 * 109.47183 * 240.00051 * 2 1 3 32 32 H 1.09001 * 109.47072 * 120.00188 * 2 1 3 33 33 H 0.96998 * 120.00150 * 180.02562 * 8 7 5 34 34 H 1.00903 * 111.00000 * 327.49152 * 13 3 2 35 35 H 1.09002 * 109.71643 * 73.13892 * 16 14 13 36 36 H 1.08997 * 109.75385 * 312.52599 * 16 14 13 37 37 H 1.08992 * 109.57093 * 299.25548 * 19 17 16 38 38 H 1.08993 * 109.56805 * 59.50355 * 19 17 16 39 39 H 1.09002 * 109.38649 * 179.58074 * 20 19 17 40 40 H 1.08998 * 109.38765 * 299.27815 * 20 19 17 41 41 H 1.09007 * 109.38437 * 61.21533 * 21 20 19 42 42 H 1.08994 * 109.39373 * 181.01824 * 21 20 19 43 43 H 1.08998 * 109.56424 * 299.49947 * 22 21 20 44 44 H 1.08993 * 109.56513 * 179.14804 * 22 21 20 45 45 H 0.97004 * 118.40474 * 324.13092 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1385 6 1 4.1535 1.8867 0.6332 7 6 4.1312 0.8827 -1.2504 8 7 3.3849 0.3450 -2.1904 9 14 5.9912 0.8862 -1.4225 10 1 6.5950 0.1482 -0.2840 11 1 6.3716 0.2271 -2.6977 12 1 6.4858 2.2864 -1.4228 13 7 1.6638 2.0949 1.2612 14 6 1.6171 3.5549 1.1053 15 1 2.3316 3.8585 0.3401 16 6 1.9871 4.2183 2.4354 17 6 1.6246 5.7015 2.3472 18 1 2.0684 6.1303 1.4487 19 6 2.1308 6.4601 3.5727 20 6 1.7560 7.9386 3.4300 21 6 0.2383 8.0837 3.3155 22 6 -0.2720 7.2985 2.1031 23 6 0.1025 5.8278 2.2730 24 1 -0.3243 5.4771 3.2125 25 7 -0.4192 5.0117 1.1889 26 6 0.2350 3.9617 0.6838 27 8 -0.3193 3.3007 -0.1688 28 1 -0.3633 0.6078 -0.8287 29 1 -0.3633 -1.0215 -0.1120 30 1 -0.3632 0.4137 0.9407 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8003 -0.0508 -2.9725 34 1 0.7837 1.7396 1.6037 35 1 3.0569 4.1113 2.6147 36 1 1.4299 3.7513 3.2475 37 1 1.6690 6.0515 4.4715 38 1 3.2140 6.3612 3.6416 39 1 2.1070 8.4869 4.3043 40 1 2.2270 8.3466 2.5357 41 1 -0.2313 7.6979 4.2204 42 1 -0.0166 9.1367 3.1963 43 1 0.1872 7.6896 1.1952 44 1 -1.3557 7.3939 2.0363 45 1 -1.2860 5.2379 0.8169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:34 Heat of formation + Delta-G solvation = -62.921539 kcal Electronic energy + Delta-G solvation = -23449.006950 eV Core-core repulsion = 20271.755830 eV Total energy + Delta-G solvation = -3177.251119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58213 -38.21716 -36.00267 -34.41403 -33.45861 -31.87009 -30.76958 -29.35869 -27.80700 -25.98643 -23.37704 -22.71852 -22.56299 -21.87911 -20.12079 -19.58093 -18.74723 -16.84090 -16.48090 -15.84339 -15.27181 -14.87305 -14.66294 -14.47044 -14.29153 -13.98856 -13.46632 -13.40993 -12.96855 -12.63531 -12.58785 -12.41977 -11.88826 -11.65667 -11.56616 -11.47407 -11.31676 -11.05918 -10.83511 -10.75091 -10.58289 -10.55022 -10.48176 -10.25338 -9.87807 -9.60907 -9.50964 -9.31360 -8.95916 -8.79678 -8.26675 -7.22175 -5.87532 -3.92640 3.07723 3.37783 3.42448 3.44888 3.50807 4.42462 4.46109 4.51155 4.65958 4.88450 4.95006 5.09483 5.15275 5.23513 5.27814 5.31185 5.40674 5.51730 5.55047 5.72107 5.81078 5.81595 5.92073 5.96484 6.02605 6.05179 6.10405 6.25702 6.37966 6.38378 6.45480 6.55900 6.66082 7.06295 7.09828 7.29280 7.34087 7.61795 7.66625 7.87588 7.96525 8.34145 8.46918 8.63506 8.78419 9.14727 9.71275 11.17591 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.005146 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.491055 B = 5440.024319 C = 6342.949613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.216 3.784 4 H 0.020 0.980 5 C -0.498 4.498 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.658 5.658 14 C 0.085 3.915 15 H 0.111 0.889 16 C -0.102 4.102 17 C -0.101 4.101 18 H 0.078 0.922 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.129 4.129 23 C 0.147 3.853 24 H 0.064 0.936 25 N -0.723 5.723 26 C 0.487 3.513 27 O -0.541 6.541 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.259 0.741 34 H 0.321 0.679 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 14.748 11.742 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.109 3.891 4 H 0.038 0.962 5 C -0.537 4.537 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.288 5.288 14 C -0.029 4.029 15 H 0.129 0.871 16 C -0.140 4.140 17 C -0.120 4.120 18 H 0.096 0.904 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.167 4.167 23 C 0.041 3.959 24 H 0.082 0.918 25 N -0.377 5.377 26 C 0.273 3.727 27 O -0.417 6.417 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.303 14.180 11.420 18.963 hybrid contribution -0.260 0.248 -0.816 0.892 sum -5.563 14.428 10.604 18.750 Atomic orbital electron populations 1.21812 0.99276 0.99048 0.99986 1.21710 0.91520 1.00158 1.02631 1.19290 0.94921 0.90298 0.84595 0.96237 1.21194 0.91323 1.36906 1.04239 0.92209 1.24954 0.97884 0.95751 0.95885 1.69894 1.34627 1.39228 1.09474 0.86637 0.86007 0.78030 0.77103 1.20350 1.21517 1.20522 1.61075 1.34445 0.99585 1.33702 1.21567 0.91070 0.92218 0.98066 0.87081 1.21655 1.02932 0.92077 0.97336 1.21434 0.93869 0.96984 0.99717 0.90376 1.21500 1.01357 0.94384 0.97383 1.21584 0.95682 0.96738 1.01978 1.21477 0.96098 0.99810 0.97831 1.21858 1.01033 0.94424 0.99407 1.20742 0.94725 0.90483 0.89927 0.91814 1.45761 1.22721 1.30852 1.38323 1.22025 0.90050 0.79430 0.81199 1.90768 1.67683 1.51335 1.31864 0.93135 0.95001 0.95127 0.88390 0.94499 0.93089 0.86104 0.90072 0.91561 0.91618 0.91037 0.91878 0.91844 0.91788 0.91757 0.91217 0.91593 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.62 37.16 0.36 -2.83 16 2 C -0.12 -3.07 5.37 -26.73 -0.14 -3.21 16 3 C 0.22 5.61 1.57 -68.87 -0.11 5.50 16 4 H 0.02 0.59 6.89 -51.93 -0.36 0.23 16 5 C -0.50 -13.87 8.44 -34.44 -0.29 -14.16 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.58 5.29 -17.82 -0.09 1.48 16 8 N -0.89 -26.20 11.29 55.43 0.63 -25.58 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.66 -14.32 5.93 -102.38 -0.61 -14.92 16 14 C 0.09 1.60 2.53 -69.06 -0.17 1.43 16 15 H 0.11 2.37 7.53 -51.93 -0.39 1.98 16 16 C -0.10 -1.46 5.02 -26.67 -0.13 -1.59 16 17 C -0.10 -1.14 1.93 -90.82 -0.18 -1.32 16 18 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 19 C -0.11 -0.96 5.33 -26.75 -0.14 -1.10 16 20 C -0.12 -0.92 5.90 -26.68 -0.16 -1.07 16 21 C -0.11 -0.81 5.91 -26.68 -0.16 -0.96 16 22 C -0.13 -1.09 5.60 -26.78 -0.15 -1.24 16 23 C 0.15 1.58 2.71 -68.73 -0.19 1.39 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 N -0.72 -9.98 5.24 -55.20 -0.29 -10.27 16 26 C 0.49 8.99 7.12 -11.78 -0.08 8.91 16 27 O -0.54 -12.29 16.19 5.55 0.09 -12.20 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.62 6.67 -51.93 -0.35 0.28 16 31 H 0.10 2.75 5.94 -51.93 -0.31 2.44 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.32 6.80 6.21 -39.29 -0.24 6.56 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.39 4.94 8.71 -40.82 -0.36 4.59 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -31.06 342.00 -9.58 -40.63 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.89 Total: 9.31 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.64 Total: -8.79 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.27 Total: -50.78 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.06 -9.58 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.288 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds