Wall clock time and date at job start Tue Mar 31 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47084 * 2 1 4 4 H 1.09006 * 109.47494 * 305.59459 * 3 2 1 5 5 C 1.50695 * 109.47225 * 185.59563 * 3 2 1 6 6 H 1.08003 * 120.00140 * 239.99976 * 5 3 2 7 7 C 1.37872 * 120.00337 * 59.99868 * 5 3 2 8 8 N 1.31524 * 119.99910 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00557 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46951 * 60.00395 * 9 7 5 11 11 H 1.48496 * 109.47479 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47404 * 300.00601 * 9 7 5 13 13 N 1.46901 * 109.47415 * 65.59417 * 3 2 1 14 14 C 1.46904 * 111.00370 * 203.53718 * 13 3 2 15 15 H 1.09001 * 109.29765 * 330.29456 * 14 13 3 16 16 C 1.53173 * 109.30139 * 210.70464 * 14 13 3 17 17 C 1.52940 * 108.21838 * 192.82005 * 16 14 13 18 18 H 1.09000 * 109.42836 * 307.96189 * 17 16 14 19 19 C 1.52766 * 110.90218 * 187.27525 * 17 16 14 20 20 C 1.53198 * 108.87182 * 179.44126 * 19 17 16 21 21 C 1.52891 * 109.96445 * 59.43080 * 20 19 17 22 22 C 1.53202 * 109.95561 * 301.07257 * 21 20 19 23 23 C 1.52710 * 108.89802 * 59.32141 * 22 21 20 24 24 H 1.08995 * 108.04431 * 57.20969 * 23 22 21 25 25 N 1.45377 * 111.69537 * 176.79586 * 23 22 21 26 26 C 1.33631 * 123.18270 * 144.41740 * 25 23 22 27 27 O 1.21288 * 118.04679 * 175.94063 * 26 25 23 28 28 H 1.08999 * 109.47026 * 53.74222 * 1 2 3 29 29 H 1.08999 * 109.46959 * 173.74128 * 1 2 3 30 30 H 1.08994 * 109.46755 * 293.73911 * 1 2 3 31 31 H 1.09000 * 109.47183 * 240.00051 * 2 1 3 32 32 H 1.09001 * 109.47072 * 120.00188 * 2 1 3 33 33 H 0.96998 * 120.00150 * 180.02562 * 8 7 5 34 34 H 1.00903 * 111.00000 * 327.49152 * 13 3 2 35 35 H 1.09002 * 109.71643 * 73.13892 * 16 14 13 36 36 H 1.08997 * 109.75385 * 312.52599 * 16 14 13 37 37 H 1.08992 * 109.57093 * 299.25548 * 19 17 16 38 38 H 1.08993 * 109.56805 * 59.50355 * 19 17 16 39 39 H 1.09002 * 109.38649 * 179.58074 * 20 19 17 40 40 H 1.08998 * 109.38765 * 299.27815 * 20 19 17 41 41 H 1.09007 * 109.38437 * 61.21533 * 21 20 19 42 42 H 1.08994 * 109.39373 * 181.01824 * 21 20 19 43 43 H 1.08998 * 109.56424 * 299.49947 * 22 21 20 44 44 H 1.08993 * 109.56513 * 179.14804 * 22 21 20 45 45 H 0.97004 * 118.40474 * 324.13092 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5972 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1385 6 1 4.1535 1.8867 0.6332 7 6 4.1312 0.8827 -1.2504 8 7 3.3849 0.3450 -2.1904 9 14 5.9912 0.8862 -1.4225 10 1 6.5950 0.1482 -0.2840 11 1 6.3716 0.2271 -2.6977 12 1 6.4858 2.2864 -1.4228 13 7 1.6638 2.0949 1.2612 14 6 1.6171 3.5549 1.1053 15 1 2.3316 3.8585 0.3401 16 6 1.9871 4.2183 2.4354 17 6 1.6246 5.7015 2.3472 18 1 2.0684 6.1303 1.4487 19 6 2.1308 6.4601 3.5727 20 6 1.7560 7.9386 3.4300 21 6 0.2383 8.0837 3.3155 22 6 -0.2720 7.2985 2.1031 23 6 0.1025 5.8278 2.2730 24 1 -0.3243 5.4771 3.2125 25 7 -0.4192 5.0117 1.1889 26 6 0.2350 3.9617 0.6838 27 8 -0.3193 3.3007 -0.1688 28 1 -0.3633 0.6078 -0.8287 29 1 -0.3633 -1.0215 -0.1120 30 1 -0.3632 0.4137 0.9407 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8003 -0.0508 -2.9725 34 1 0.7837 1.7396 1.6037 35 1 3.0569 4.1113 2.6147 36 1 1.4299 3.7513 3.2475 37 1 1.6690 6.0515 4.4715 38 1 3.2140 6.3612 3.6416 39 1 2.1070 8.4869 4.3043 40 1 2.2270 8.3466 2.5357 41 1 -0.2313 7.6979 4.2204 42 1 -0.0166 9.1367 3.1963 43 1 0.1872 7.6896 1.1952 44 1 -1.3557 7.3939 2.0363 45 1 -1.2860 5.2379 0.8169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:34 Heat of formation + Delta-G solvation = -84.297527 kcal Electronic energy + Delta-G solvation = -23449.933882 eV Core-core repulsion = 20271.755830 eV Total energy + Delta-G solvation = -3178.178052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83398 -39.37407 -37.83572 -35.55010 -34.96220 -33.72076 -32.23120 -30.28894 -29.35718 -27.80548 -24.91327 -24.30924 -23.52329 -22.96887 -21.56944 -20.84849 -20.07984 -18.44429 -17.96988 -17.50144 -16.97955 -16.22415 -16.07062 -15.71902 -15.34032 -15.15540 -14.97212 -14.64467 -14.54791 -14.07504 -13.86891 -13.59430 -13.49956 -13.13649 -12.86318 -12.73381 -12.64141 -12.56762 -12.47250 -12.26116 -11.97166 -11.79311 -11.64500 -11.53169 -11.38140 -11.32655 -11.10143 -11.06205 -10.65301 -10.42225 -10.01523 -9.08338 -8.03970 -6.17674 1.42388 1.44999 1.52512 1.57756 2.29649 2.45212 3.20704 3.38361 3.61733 3.64813 3.83091 3.93740 4.19661 4.25577 4.38213 4.41584 4.47630 4.50118 4.54581 4.57281 4.59356 4.65301 4.72396 4.92203 5.00052 5.09367 5.11450 5.16146 5.24644 5.29467 5.32252 5.34841 5.36430 5.36913 5.42935 5.61433 5.63060 5.76272 5.85400 5.91901 6.26126 6.34465 6.43848 6.83015 6.96739 7.24243 7.50745 8.99909 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.005146 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.491055 B = 5440.024319 C = 6342.949613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 C 0.227 3.773 4 H -0.028 1.028 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.653 5.653 14 C 0.083 3.917 15 H 0.077 0.923 16 C -0.091 4.091 17 C -0.096 4.096 18 H 0.064 0.936 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.124 4.124 23 C 0.141 3.859 24 H 0.082 0.918 25 N -0.704 5.704 26 C 0.487 3.513 27 O -0.592 6.592 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.324 0.676 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 16.540 14.219 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C 0.119 3.881 4 H -0.010 1.010 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.563 5.563 9 Si 0.787 3.213 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.284 5.284 14 C -0.031 4.031 15 H 0.095 0.905 16 C -0.129 4.129 17 C -0.115 4.115 18 H 0.083 0.917 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.162 4.162 23 C 0.037 3.963 24 H 0.100 0.900 25 N -0.356 5.356 26 C 0.273 3.727 27 O -0.472 6.472 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.326 16.035 13.951 21.912 hybrid contribution -0.292 -0.240 -1.571 1.616 sum -5.617 15.795 12.380 20.840 Atomic orbital electron populations 1.21629 0.96902 1.00168 0.99864 1.21566 0.93626 0.99318 1.01143 1.18961 0.93910 0.90499 0.84777 1.01018 1.21466 0.92398 1.36920 1.04415 0.92458 1.25781 1.02678 0.95295 0.95472 1.70058 1.36520 1.39846 1.09884 0.85570 0.80208 0.78340 0.77224 1.19402 1.21227 1.19718 1.61029 1.34654 1.01352 1.31317 1.21577 0.90956 0.90776 0.99786 0.90493 1.21580 1.02816 0.93924 0.94588 1.21414 0.94434 0.94879 1.00807 0.91710 1.21480 1.01422 0.95057 0.96127 1.21585 0.96146 0.95584 1.02514 1.21480 0.95581 1.00413 0.97314 1.21845 1.01983 0.92347 1.00018 1.21068 0.94232 0.91773 0.89266 0.89995 1.45641 1.22523 1.29368 1.38048 1.21800 0.89841 0.80227 0.80838 1.90751 1.68732 1.53514 1.34202 0.95521 0.92600 0.93439 0.91442 0.94169 0.93188 0.85767 0.90483 0.90462 0.90365 0.91039 0.90217 0.92441 0.90627 0.90326 0.92068 0.90170 0.76611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 9.62 71.98 0.69 -5.08 16 2 C -0.12 -6.14 5.37 30.60 0.16 -5.97 16 3 C 0.23 12.31 1.57 44.17 0.07 12.38 16 4 H -0.03 -1.76 6.89 -2.38 -0.02 -1.78 16 5 C -0.51 -29.54 8.44 25.60 0.22 -29.33 16 6 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 7 C 0.01 0.32 5.29 84.65 0.45 0.77 16 8 N -0.92 -56.12 11.29 21.45 0.24 -55.87 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.65 -29.26 5.93 -477.82 -2.83 -32.09 16 14 C 0.08 3.23 2.53 44.04 0.11 3.34 16 15 H 0.08 3.52 7.53 -2.39 -0.02 3.50 16 16 C -0.09 -2.55 5.02 30.63 0.15 -2.39 16 17 C -0.10 -2.02 1.93 -10.92 -0.02 -2.04 16 18 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 19 C -0.10 -1.52 5.33 30.58 0.16 -1.36 16 20 C -0.12 -1.40 5.90 30.62 0.18 -1.22 16 21 C -0.11 -1.12 5.91 30.63 0.18 -0.94 16 22 C -0.12 -1.71 5.60 30.57 0.17 -1.54 16 23 C 0.14 2.69 2.71 45.08 0.12 2.81 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 N -0.70 -18.83 5.24 -447.57 -2.34 -21.18 16 26 C 0.49 18.41 7.12 87.65 0.62 19.03 16 27 O -0.59 -28.12 16.19 -3.05 -0.05 -28.17 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.94 6.67 -2.39 -0.02 1.93 16 31 H 0.07 3.94 5.94 -2.39 -0.01 3.92 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.32 13.93 6.21 -89.69 -0.56 13.38 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.01 8.13 -2.39 -0.02 1.99 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.40 9.67 8.71 -92.71 -0.81 8.86 16 Total: -1.00 -70.85 342.00 -0.08 -70.92 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.39 Total: 30.72 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 3.28 Total: -11.53 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -4.94 Total: -109.14 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.17 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.85 -0.08 -70.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.377 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds