Wall clock time and date at job start Tue Mar 31 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 N 1.46501 * 109.47142 * 119.99992 * 2 1 3 5 5 C 1.46763 * 124.35045 * 119.99864 * 4 2 1 6 6 C 1.54482 * 105.47659 * 162.98681 * 5 4 2 7 7 C 1.54632 * 101.76290 * 25.41203 * 6 5 4 8 8 H 1.08996 * 110.48451 * 94.01593 * 7 6 5 9 9 N 1.46900 * 110.48714 * 216.52905 * 7 6 5 10 10 C 1.46929 * 110.98461 * 314.23074 * 9 7 6 11 11 C 1.53037 * 109.47910 * 174.18240 * 10 9 7 12 12 C 1.53114 * 109.31211 * 59.15772 * 11 10 9 13 13 C 1.53126 * 109.16239 * 302.32855 * 12 11 10 14 14 H 1.09006 * 109.49902 * 297.71480 * 13 12 11 15 15 C 1.50701 * 109.50380 * 177.59650 * 13 12 11 16 16 H 1.08000 * 119.99638 * 239.99600 * 15 13 12 17 17 C 1.37877 * 120.00105 * 59.99644 * 15 13 12 18 18 N 1.31517 * 119.99918 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99983 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46930 * 60.00149 * 19 17 15 21 21 H 1.48502 * 109.47168 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47159 * 300.00470 * 19 17 15 23 23 C 1.46850 * 110.99740 * 190.00288 * 9 7 6 24 24 C 1.34423 * 124.34826 * 300.00256 * 4 2 1 25 25 O 1.21273 * 124.94073 * 0.43478 * 24 4 2 26 26 H 1.09003 * 109.47189 * 300.00369 * 1 2 3 27 27 H 1.09007 * 109.47126 * 59.99839 * 1 2 3 28 28 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47189 * 239.99630 * 2 1 3 30 30 H 1.09001 * 109.47100 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47327 * 299.99748 * 3 2 1 32 32 H 1.08991 * 109.47259 * 60.00171 * 3 2 1 33 33 H 1.09001 * 110.24817 * 43.98305 * 5 4 2 34 34 H 1.09004 * 110.24272 * 281.98227 * 5 4 2 35 35 H 1.08994 * 110.96388 * 267.29769 * 6 5 4 36 36 H 1.08995 * 111.00176 * 143.54443 * 6 5 4 37 37 H 1.08994 * 109.51866 * 54.15475 * 10 9 7 38 38 H 1.09007 * 109.45009 * 294.16157 * 10 9 7 39 39 H 1.09002 * 109.50283 * 299.19589 * 11 10 9 40 40 H 1.09003 * 109.50113 * 179.11776 * 11 10 9 41 41 H 1.09006 * 109.52545 * 62.23190 * 12 11 10 42 42 H 1.09002 * 109.52724 * 182.41937 * 12 11 10 43 43 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.46198 * 65.82029 * 23 9 7 45 45 H 1.08999 * 109.45191 * 305.84745 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 3.4723 -1.9924 2.5896 7 6 2.4203 -1.2417 3.4387 8 1 1.6981 -1.9422 3.8579 9 7 3.0742 -0.4771 4.5092 10 6 4.0912 -1.2897 5.1905 11 6 4.8485 -0.4207 6.1971 12 6 3.8596 0.1532 7.2155 13 6 2.7844 0.9541 6.4759 14 1 3.2484 1.7919 5.9553 15 6 1.7737 1.4733 7.4658 16 1 0.7360 1.1871 7.3784 17 6 2.1737 2.3137 8.4830 18 7 3.4373 2.6626 8.5891 19 14 0.9207 2.9578 9.7096 20 1 0.2873 1.8155 10.4162 21 1 1.5998 3.8357 10.6962 22 1 -0.1212 3.7347 8.9912 23 6 2.0861 0.0458 5.4614 24 6 1.7479 -0.3083 2.4562 25 8 1.0640 0.6457 2.7609 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.6564 -1.7772 0.4310 34 1 2.2644 -2.7715 0.9545 35 1 4.4400 -1.4931 2.6369 36 1 3.5565 -3.0328 2.9034 37 1 4.7908 -1.6883 4.4560 38 1 3.6063 -2.1135 5.7144 39 1 5.3450 0.3955 5.6722 40 1 5.5925 -1.0269 6.7139 41 1 3.3914 -0.6617 7.7678 42 1 4.3888 0.8072 7.9086 43 1 3.7186 3.2542 9.3046 44 1 1.6106 -0.7843 5.9839 45 1 1.3298 0.6168 4.9228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:55 Heat of formation + Delta-G solvation = -34.309268 kcal Electronic energy + Delta-G solvation = -23441.350234 eV Core-core repulsion = 20265.339835 eV Total energy + Delta-G solvation = -3176.010398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58452 -37.88350 -36.21083 -35.00618 -33.11212 -31.41211 -29.93869 -28.83912 -27.20196 -26.75524 -24.93002 -22.92115 -22.50119 -21.58295 -20.39186 -18.64568 -18.55906 -16.81004 -16.67044 -16.01274 -15.19601 -14.73478 -14.46136 -14.30086 -13.89940 -13.73481 -13.58900 -13.35298 -12.90393 -12.69243 -12.53573 -12.27951 -12.20280 -12.04104 -11.81530 -11.68310 -11.45109 -11.27872 -11.19696 -11.02610 -10.84018 -10.63766 -10.56972 -10.03881 -9.77586 -9.44036 -9.31096 -8.86937 -8.62381 -8.54132 -8.20710 -7.64819 -5.87962 -3.92900 2.83582 3.05546 3.39497 3.43171 3.46877 4.32096 4.43908 4.54034 4.62957 4.86296 4.93844 5.09175 5.12948 5.16963 5.35583 5.42106 5.48467 5.57898 5.64417 5.70748 5.73442 5.74375 5.86146 5.86373 5.97710 6.09473 6.18314 6.27554 6.31422 6.48837 6.65182 6.74548 6.77733 6.82391 7.11346 7.27607 7.29465 7.44924 7.68617 7.83061 7.86951 8.20495 8.26841 8.51075 8.59210 9.10661 9.70482 11.18286 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.004899 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.550188 B = 5714.524516 C = 6573.004414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.156 3.844 3 C -0.168 4.168 4 N -0.624 5.624 5 C 0.108 3.892 6 C -0.130 4.130 7 C 0.048 3.952 8 H 0.071 0.929 9 N -0.519 5.519 10 C 0.060 3.940 11 C -0.116 4.116 12 C -0.112 4.112 13 C 0.058 3.942 14 H 0.033 0.967 15 C -0.510 4.510 16 H 0.052 0.948 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.061 3.939 24 C 0.534 3.466 25 O -0.506 6.506 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.259 0.741 44 H 0.015 0.985 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -11.052 -16.983 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.054 3.946 3 C -0.226 4.226 4 N -0.361 5.361 5 C -0.016 4.016 6 C -0.168 4.168 7 C -0.064 4.064 8 H 0.088 0.912 9 N -0.245 5.245 10 C -0.068 4.068 11 C -0.154 4.154 12 C -0.150 4.150 13 C 0.039 3.961 14 H 0.051 0.949 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.066 4.066 24 C 0.320 3.680 25 O -0.379 6.379 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.021 -9.977 -16.975 19.716 hybrid contribution -1.024 -0.475 1.022 1.523 sum -0.003 -10.451 -15.953 19.071 Atomic orbital electron populations 1.22192 0.94983 1.02074 1.03363 1.20858 0.94268 0.93189 0.86291 1.22181 1.01323 0.95815 1.03303 1.48380 1.52363 1.29276 1.06038 1.22019 0.93750 0.87532 0.98288 1.22803 0.99664 1.01198 0.93139 1.22281 0.96327 0.94289 0.93495 0.91159 1.62031 1.15274 1.34543 1.12613 1.22157 0.94061 0.94596 0.95963 1.21670 0.98152 0.98523 0.97087 1.21676 0.97141 0.98575 0.97588 1.18628 0.93225 0.92867 0.91384 0.94879 1.21116 0.94287 1.28080 1.11388 0.92931 1.24916 0.95130 0.96128 0.97658 1.69886 1.14819 1.35545 1.32727 0.86697 0.81642 0.78823 0.81040 1.20435 1.21369 1.20303 1.22527 0.93633 0.97580 0.92820 1.20630 0.79765 0.84524 0.83078 1.90680 1.38405 1.27936 1.80860 0.90740 0.91729 0.92778 0.89954 0.92504 0.91854 0.90594 0.90654 0.91585 0.88768 0.89604 0.91907 0.95796 0.92118 0.93452 0.95205 0.89093 0.93130 0.96657 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.20 37.16 0.34 -1.50 16 2 C 0.16 1.71 3.47 -67.93 -0.24 1.47 16 3 C -0.17 -2.00 9.20 37.16 0.34 -1.66 16 4 N -0.62 -7.89 2.83 -164.84 -0.47 -8.36 16 5 C 0.11 0.99 7.30 -3.12 -0.02 0.97 16 6 C -0.13 -1.39 5.38 -25.10 -0.14 -1.53 16 7 C 0.05 0.75 2.73 -67.72 -0.18 0.57 16 8 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 9 N -0.52 -9.94 4.51 -226.63 -1.02 -10.96 16 10 C 0.06 1.02 5.08 -3.79 -0.02 1.00 16 11 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 12 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 13 C 0.06 1.53 2.26 -91.69 -0.21 1.32 16 14 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.51 -14.71 8.56 -34.44 -0.29 -15.00 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.89 -26.19 11.35 55.43 0.63 -25.56 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.06 1.40 4.54 -3.83 -0.02 1.39 16 24 C 0.53 8.98 7.01 -10.86 -0.08 8.91 16 25 O -0.51 -10.56 13.05 5.56 0.07 -10.49 16 26 H 0.07 1.06 6.77 -51.93 -0.35 0.70 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.67 8.07 -51.93 -0.42 0.26 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.17 6.80 -51.93 -0.35 0.82 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.06 6.96 -51.93 -0.36 0.70 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.88 5.96 -51.93 -0.31 0.57 16 38 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 2.04 6.04 -51.93 -0.31 1.72 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -32.10 340.47 -9.46 -41.56 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.88 Total: -0.72 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.90 Total: -7.66 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.86 Total: -44.88 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.10 -9.46 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.250 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds