Wall clock time and date at job start Tue Mar 31 2020 01:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 N 1.46501 * 109.47142 * 119.99992 * 2 1 3 5 5 C 1.46763 * 124.35045 * 119.99864 * 4 2 1 6 6 C 1.54482 * 105.47659 * 162.98681 * 5 4 2 7 7 C 1.54632 * 101.76290 * 25.41203 * 6 5 4 8 8 H 1.08996 * 110.48451 * 94.01593 * 7 6 5 9 9 N 1.46900 * 110.48714 * 216.52905 * 7 6 5 10 10 C 1.46929 * 110.98461 * 314.23074 * 9 7 6 11 11 C 1.53037 * 109.47910 * 174.18240 * 10 9 7 12 12 C 1.53114 * 109.31211 * 59.15772 * 11 10 9 13 13 C 1.53126 * 109.16239 * 302.32855 * 12 11 10 14 14 H 1.09006 * 109.49902 * 297.71480 * 13 12 11 15 15 C 1.50701 * 109.50380 * 177.59650 * 13 12 11 16 16 H 1.08000 * 119.99638 * 239.99600 * 15 13 12 17 17 C 1.37877 * 120.00105 * 59.99644 * 15 13 12 18 18 N 1.31517 * 119.99918 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99983 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46930 * 60.00149 * 19 17 15 21 21 H 1.48502 * 109.47168 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47159 * 300.00470 * 19 17 15 23 23 C 1.46850 * 110.99740 * 190.00288 * 9 7 6 24 24 C 1.34423 * 124.34826 * 300.00256 * 4 2 1 25 25 O 1.21273 * 124.94073 * 0.43478 * 24 4 2 26 26 H 1.09003 * 109.47189 * 300.00369 * 1 2 3 27 27 H 1.09007 * 109.47126 * 59.99839 * 1 2 3 28 28 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47189 * 239.99630 * 2 1 3 30 30 H 1.09001 * 109.47100 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47327 * 299.99748 * 3 2 1 32 32 H 1.08991 * 109.47259 * 60.00171 * 3 2 1 33 33 H 1.09001 * 110.24817 * 43.98305 * 5 4 2 34 34 H 1.09004 * 110.24272 * 281.98227 * 5 4 2 35 35 H 1.08994 * 110.96388 * 267.29769 * 6 5 4 36 36 H 1.08995 * 111.00176 * 143.54443 * 6 5 4 37 37 H 1.08994 * 109.51866 * 54.15475 * 10 9 7 38 38 H 1.09007 * 109.45009 * 294.16157 * 10 9 7 39 39 H 1.09002 * 109.50283 * 299.19589 * 11 10 9 40 40 H 1.09003 * 109.50113 * 179.11776 * 11 10 9 41 41 H 1.09006 * 109.52545 * 62.23190 * 12 11 10 42 42 H 1.09002 * 109.52724 * 182.41937 * 12 11 10 43 43 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.46198 * 65.82029 * 23 9 7 45 45 H 1.08999 * 109.45191 * 305.84745 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1728 6 6 3.4723 -1.9924 2.5896 7 6 2.4203 -1.2417 3.4387 8 1 1.6981 -1.9422 3.8579 9 7 3.0742 -0.4771 4.5092 10 6 4.0912 -1.2897 5.1905 11 6 4.8485 -0.4207 6.1971 12 6 3.8596 0.1532 7.2155 13 6 2.7844 0.9541 6.4759 14 1 3.2484 1.7919 5.9553 15 6 1.7737 1.4733 7.4658 16 1 0.7360 1.1871 7.3784 17 6 2.1737 2.3137 8.4830 18 7 3.4373 2.6626 8.5891 19 14 0.9207 2.9578 9.7096 20 1 0.2873 1.8155 10.4162 21 1 1.5998 3.8357 10.6962 22 1 -0.1212 3.7347 8.9912 23 6 2.0861 0.0458 5.4614 24 6 1.7479 -0.3083 2.4562 25 8 1.0640 0.6457 2.7609 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.6564 -1.7772 0.4310 34 1 2.2644 -2.7715 0.9545 35 1 4.4400 -1.4931 2.6369 36 1 3.5565 -3.0328 2.9034 37 1 4.7908 -1.6883 4.4560 38 1 3.6063 -2.1135 5.7144 39 1 5.3450 0.3955 5.6722 40 1 5.5925 -1.0269 6.7139 41 1 3.3914 -0.6617 7.7678 42 1 4.3888 0.8072 7.9086 43 1 3.7186 3.2542 9.3046 44 1 1.6106 -0.7843 5.9839 45 1 1.3298 0.6168 4.9228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:54 Heat of formation + Delta-G solvation = -55.902975 kcal Electronic energy + Delta-G solvation = -23442.286607 eV Core-core repulsion = 20265.339835 eV Total energy + Delta-G solvation = -3176.946771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73316 -39.44402 -37.43298 -36.30990 -34.85448 -33.04487 -31.75097 -29.98553 -28.11869 -27.93907 -26.96222 -24.44101 -23.76310 -22.90977 -21.77378 -20.40015 -19.74405 -18.49730 -17.85322 -17.51217 -16.64477 -16.31655 -15.86119 -15.64154 -15.34324 -14.92903 -14.72398 -14.59868 -14.46186 -14.18389 -14.06941 -13.69442 -13.59034 -13.26276 -12.98106 -12.86494 -12.85343 -12.79466 -12.54163 -12.43906 -12.25190 -12.11143 -11.96316 -11.73130 -11.69346 -11.37637 -10.93134 -10.80700 -10.39521 -10.31475 -9.61000 -9.15153 -8.09951 -6.24193 1.37150 1.40148 1.47629 1.61292 2.08410 2.41052 3.10899 3.16041 3.39466 3.67013 3.94685 4.10376 4.10980 4.16347 4.22031 4.31659 4.33679 4.42050 4.55236 4.61911 4.67951 4.71133 4.79618 4.83153 4.87337 4.89539 4.90784 4.98196 5.02063 5.09416 5.19370 5.22698 5.27190 5.31932 5.39835 5.50276 5.61197 5.82532 5.93347 6.13241 6.17924 6.19808 6.35456 6.44498 6.86878 7.32863 7.42908 8.94664 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.004899 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.550188 B = 5714.524516 C = 6573.004414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 C -0.165 4.165 4 N -0.617 5.617 5 C 0.105 3.895 6 C -0.119 4.119 7 C 0.040 3.960 8 H 0.072 0.928 9 N -0.534 5.534 10 C 0.064 3.936 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.057 3.943 14 H -0.014 1.014 15 C -0.540 4.540 16 H 0.043 0.957 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.955 3.045 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.081 3.919 24 C 0.517 3.483 25 O -0.565 6.565 26 H 0.030 0.970 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.128 0.872 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.261 0.739 44 H 0.011 0.989 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -13.910 -19.072 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 C -0.223 4.223 4 N -0.351 5.351 5 C -0.016 4.016 6 C -0.156 4.156 7 C -0.071 4.071 8 H 0.089 0.911 9 N -0.259 5.259 10 C -0.063 4.063 11 C -0.149 4.149 12 C -0.142 4.142 13 C 0.038 3.962 14 H 0.004 0.996 15 C -0.579 4.579 16 H 0.061 0.939 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.780 3.220 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.046 4.046 24 C 0.304 3.696 25 O -0.442 6.442 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.029 0.971 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.059 -12.882 -19.108 23.136 hybrid contribution -1.335 0.445 1.597 2.129 sum 0.724 -12.437 -17.511 21.490 Atomic orbital electron populations 1.22146 0.95317 1.02382 1.02324 1.21127 0.94132 0.92793 0.87029 1.22145 1.01281 0.96717 1.02139 1.48547 1.51634 1.29890 1.05070 1.22370 0.94430 0.86808 0.98038 1.22881 0.97749 1.02220 0.92778 1.22458 0.98031 0.94031 0.92622 0.91088 1.61858 1.14859 1.36738 1.12450 1.22222 0.93983 0.93654 0.96443 1.21600 0.97711 0.98951 0.96614 1.21456 0.97186 0.97508 0.98018 1.18528 0.93535 0.92397 0.91704 0.99623 1.21467 0.94461 1.29274 1.12681 0.93887 1.25708 0.97125 0.96125 0.99348 1.70027 1.16385 1.35669 1.33236 0.85672 0.79164 0.78479 0.78695 1.19338 1.20245 1.20242 1.22020 0.93587 0.96517 0.92485 1.21057 0.79460 0.84161 0.84957 1.90654 1.40999 1.30525 1.82068 0.95033 0.89505 0.91731 0.85417 0.92374 0.89441 0.95316 0.87501 0.88665 0.88842 0.86123 0.87302 0.94941 0.93441 0.90309 0.95678 0.92364 0.92946 0.97116 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.20 71.98 0.66 -2.76 16 2 C 0.15 2.94 3.47 44.99 0.16 3.09 16 3 C -0.16 -3.83 9.20 71.98 0.66 -3.17 16 4 N -0.62 -14.28 2.83 -794.04 -2.25 -16.53 16 5 C 0.11 1.41 7.30 86.83 0.63 2.04 16 6 C -0.12 -2.01 5.38 31.65 0.17 -1.84 16 7 C 0.04 1.21 2.73 44.91 0.12 1.33 16 8 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 9 N -0.53 -20.48 4.51 -870.93 -3.93 -24.41 16 10 C 0.06 2.04 5.08 86.31 0.44 2.48 16 11 C -0.11 -4.27 6.09 30.64 0.19 -4.08 16 12 C -0.10 -5.20 5.02 30.67 0.15 -5.04 16 13 C 0.06 3.21 2.26 -11.49 -0.03 3.19 16 14 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 15 C -0.54 -32.91 8.56 25.60 0.22 -32.69 16 16 H 0.04 2.62 7.74 -2.91 -0.02 2.59 16 17 C 0.02 0.93 5.30 84.65 0.45 1.38 16 18 N -0.91 -55.84 11.35 21.45 0.24 -55.60 16 19 Si 0.95 46.57 29.54 68.60 2.03 48.59 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 23 C 0.08 3.97 4.54 86.33 0.39 4.37 16 24 C 0.52 17.61 7.01 87.90 0.62 18.22 16 25 O -0.56 -25.44 13.05 -3.01 -0.04 -25.48 16 26 H 0.03 0.93 6.77 -2.39 -0.02 0.92 16 27 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.13 1.43 8.07 -2.39 -0.02 1.41 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 0.93 6.80 -2.39 -0.02 0.92 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.09 1.65 6.96 -2.39 -0.02 1.64 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.11 2.55 5.96 -2.39 -0.01 2.53 16 38 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.02 1.23 8.14 -2.38 -0.02 1.22 16 42 H 0.06 3.29 6.15 -2.39 -0.01 3.27 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 Total: -1.00 -78.64 340.47 1.84 -76.81 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.94 Total: 10.09 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.84 Total: -13.48 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -5.93 Total: -96.54 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.64 1.84 -76.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.906 kcal (2) G-P(sol) polarization free energy of solvation -78.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds