Wall clock time and date at job start Tue Mar 31 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 N 1.46503 * 109.46925 * 119.99303 * 2 1 3 5 5 C 1.46766 * 124.34473 * 120.00547 * 4 2 1 6 6 C 1.54486 * 105.47111 * 162.96460 * 5 4 2 7 7 C 1.54628 * 101.76443 * 25.41177 * 6 5 4 8 8 H 1.09003 * 110.48250 * 94.01782 * 7 6 5 9 9 N 1.46901 * 110.48345 * 216.52231 * 7 6 5 10 10 C 1.46852 * 110.99898 * 65.79661 * 9 7 6 11 11 C 1.53034 * 109.52360 * 185.83581 * 10 9 7 12 12 C 1.53120 * 109.27725 * 300.82215 * 11 10 9 13 13 C 1.53112 * 109.16467 * 57.65365 * 12 11 10 14 14 H 1.08997 * 109.53584 * 62.30496 * 13 12 11 15 15 C 1.50706 * 109.50467 * 182.40802 * 13 12 11 16 16 H 1.07999 * 120.00196 * 119.80348 * 15 13 12 17 17 C 1.37879 * 119.99394 * 299.80216 * 15 13 12 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 13 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 13 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.46849 * 110.99628 * 189.99852 * 9 7 6 24 24 C 1.34417 * 124.35162 * 299.98094 * 4 2 1 25 25 O 1.21274 * 124.94331 * 0.42560 * 24 4 2 26 26 H 1.09000 * 109.47780 * 300.00042 * 1 2 3 27 27 H 1.09000 * 109.46977 * 60.00822 * 1 2 3 28 28 H 1.08999 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47585 * 239.99397 * 2 1 3 30 30 H 1.08998 * 109.47456 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47357 * 299.99264 * 3 2 1 32 32 H 1.09004 * 109.47638 * 59.99609 * 3 2 1 33 33 H 1.08998 * 110.24863 * 43.96395 * 5 4 2 34 34 H 1.09000 * 110.31812 * 281.99907 * 5 4 2 35 35 H 1.09005 * 110.96789 * 267.29188 * 6 5 4 36 36 H 1.09002 * 110.97055 * 143.53635 * 6 5 4 37 37 H 1.08999 * 109.45713 * 305.85006 * 10 9 7 38 38 H 1.09004 * 109.46202 * 65.81514 * 10 9 7 39 39 H 1.09001 * 109.50586 * 60.75784 * 11 10 9 40 40 H 1.08992 * 109.50406 * 180.83922 * 11 10 9 41 41 H 1.09005 * 109.52058 * 297.74698 * 12 11 10 42 42 H 1.09003 * 109.52344 * 177.55927 * 12 11 10 43 43 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46232 * 54.15354 * 23 9 7 45 45 H 1.08996 * 109.45882 * 294.17231 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8886 1.1729 6 6 3.4727 -1.9917 2.5897 7 6 2.4209 -1.2409 3.4388 8 1 1.6989 -1.9414 3.8584 9 7 3.0750 -0.4761 4.5090 10 6 3.9015 0.6037 3.9545 11 6 4.6788 1.2841 5.0835 12 6 3.6912 1.8473 6.1092 13 6 2.8103 0.7108 6.6354 14 1 3.4316 -0.0264 7.1438 15 6 1.7960 1.2665 7.6017 16 1 0.7408 1.1573 7.3991 17 6 2.2153 1.9142 8.7443 18 7 1.3302 2.3986 9.5878 19 14 4.0403 2.1024 9.0951 20 1 4.5316 3.3691 8.4955 21 1 4.2619 2.1311 10.5632 22 1 4.7784 0.9568 8.5053 23 6 2.0871 0.0470 5.4612 24 6 1.7482 -0.3078 2.4562 25 8 1.0648 0.6465 2.7610 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 3.1299 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6765 1.9564 0.8900 33 1 3.6562 -1.7771 0.4309 34 1 2.2658 -2.7721 0.9544 35 1 4.4406 -1.4924 2.6366 36 1 3.5568 -3.0322 2.9034 37 1 4.6022 0.1890 3.2298 38 1 3.2607 1.3354 3.4623 39 1 5.3301 0.5561 5.5673 40 1 5.2807 2.0951 4.6737 41 1 3.0655 2.6036 5.6352 42 1 4.2413 2.2949 6.9370 43 1 1.6251 2.8540 10.3920 44 1 1.4700 -0.7719 5.8310 45 1 1.4551 0.7814 4.9620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:00 Heat of formation + Delta-G solvation = -27.586803 kcal Electronic energy + Delta-G solvation = -23795.596437 eV Core-core repulsion = 20619.877546 eV Total energy + Delta-G solvation = -3175.718890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91511 -37.99103 -36.34448 -35.17938 -33.07669 -31.77427 -30.25677 -29.17831 -27.31525 -26.89266 -24.92268 -23.33921 -22.39722 -21.80814 -20.66666 -19.06136 -18.44607 -16.86945 -16.77391 -16.34608 -15.56893 -15.06393 -14.54014 -14.30583 -14.00253 -13.88495 -13.68633 -13.47779 -13.13940 -13.00620 -12.74546 -12.43233 -12.21017 -12.13289 -12.07785 -11.87309 -11.77354 -11.38861 -11.26507 -11.17016 -10.96824 -10.82857 -10.39928 -10.01605 -9.88189 -9.80065 -9.59539 -9.03266 -8.85208 -8.74294 -8.43251 -7.68786 -5.98303 -3.96517 2.71168 2.92519 3.34517 3.44575 3.48368 4.12777 4.41149 4.49867 4.54291 4.80904 4.85541 4.93835 5.00017 5.05126 5.27841 5.32761 5.39600 5.48622 5.50152 5.54026 5.59075 5.65016 5.73751 5.82669 5.86797 5.92779 6.06793 6.12373 6.15660 6.25838 6.34671 6.39395 6.59239 6.62453 6.76999 6.86086 6.92434 7.15330 7.27328 7.42776 7.54220 7.73753 7.93179 8.32788 8.62692 9.06425 9.64542 11.15220 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.004930 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.533309 B = 5678.114985 C = 5930.969474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.622 5.622 5 C 0.104 3.896 6 C -0.125 4.125 7 C 0.051 3.949 8 H 0.114 0.886 9 N -0.512 5.512 10 C 0.053 3.947 11 C -0.117 4.117 12 C -0.122 4.122 13 C 0.022 3.978 14 H 0.033 0.967 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.263 1.263 23 C 0.067 3.933 24 C 0.492 3.508 25 O -0.513 6.513 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -9.010 -21.072 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.051 3.949 3 C -0.226 4.226 4 N -0.359 5.359 5 C -0.020 4.020 6 C -0.163 4.163 7 C -0.062 4.062 8 H 0.132 0.868 9 N -0.235 5.235 10 C -0.075 4.075 11 C -0.154 4.154 12 C -0.160 4.160 13 C 0.003 3.997 14 H 0.052 0.948 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.188 1.188 23 C -0.059 4.059 24 C 0.278 3.722 25 O -0.387 6.387 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.262 -8.676 -20.526 22.897 hybrid contribution 0.428 0.748 -0.278 0.905 sum 5.689 -7.928 -20.805 22.979 Atomic orbital electron populations 1.22177 0.94856 1.02187 1.03330 1.20880 0.94416 0.93073 0.86546 1.22179 1.01118 0.95964 1.03311 1.48582 1.52125 1.29028 1.06197 1.22088 0.93780 0.87580 0.98551 1.22725 0.99193 1.02155 0.92256 1.22614 0.96276 0.96052 0.91221 0.86807 1.62417 1.23058 1.25528 1.12546 1.22132 0.96098 0.92503 0.96724 1.21619 0.98216 0.98953 0.96653 1.22022 0.97114 1.00094 0.96738 1.19152 0.94860 0.93050 0.92663 0.94849 1.21012 0.94031 1.35797 1.03956 0.90917 1.24980 0.97328 0.94999 0.95846 1.69910 1.33619 1.38521 1.12192 0.86828 0.86529 0.78920 0.75868 1.20800 1.22698 1.18832 1.22260 0.92736 0.98514 0.92417 1.22119 0.80230 0.85835 0.84065 1.90718 1.38245 1.28655 1.81062 0.90805 0.91725 0.92664 0.89936 0.92658 0.91722 0.90831 0.90769 0.91297 0.89321 0.88903 0.92001 0.94444 0.91833 0.92863 0.92470 0.93602 0.92795 0.91745 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.20 37.16 0.34 -1.42 16 2 C 0.15 1.56 3.48 -67.93 -0.24 1.32 16 3 C -0.17 -1.83 9.20 37.16 0.34 -1.49 16 4 N -0.62 -7.19 2.83 -164.85 -0.47 -7.66 16 5 C 0.10 0.85 7.30 -3.12 -0.02 0.83 16 6 C -0.13 -1.21 6.66 -25.10 -0.17 -1.38 16 7 C 0.05 0.72 3.00 -67.72 -0.20 0.52 16 8 H 0.11 1.56 7.98 -51.93 -0.41 1.15 16 9 N -0.51 -9.00 4.64 -226.69 -1.05 -10.05 16 10 C 0.05 0.90 4.70 -3.83 -0.02 0.88 16 11 C -0.12 -2.14 6.09 -26.65 -0.16 -2.31 16 12 C -0.12 -2.78 4.74 -26.61 -0.13 -2.91 16 13 C 0.02 0.54 1.85 -91.69 -0.17 0.37 16 14 H 0.03 0.85 7.19 -51.93 -0.37 0.47 16 15 C -0.51 -14.84 9.14 -34.44 -0.31 -15.16 16 16 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 19 Si 0.89 22.69 24.36 -169.99 -4.14 18.55 16 20 H -0.28 -7.02 6.89 56.52 0.39 -6.63 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 23 C 0.07 1.45 4.44 -3.83 -0.02 1.44 16 24 C 0.49 7.54 5.49 -10.86 -0.06 7.48 16 25 O -0.51 -9.99 12.46 5.56 0.07 -9.92 16 26 H 0.07 1.02 6.78 -51.93 -0.35 0.67 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.05 6.80 -51.93 -0.35 0.70 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.89 6.14 -51.93 -0.32 0.57 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.88 6.16 -51.93 -0.32 0.56 16 38 H 0.04 0.71 6.64 -51.93 -0.34 0.37 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.05 1.09 3.37 -51.93 -0.17 0.92 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.06 1.38 8.02 -51.93 -0.42 0.97 16 45 H 0.05 1.26 6.36 -51.93 -0.33 0.93 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -33.34 330.72 -8.39 -41.72 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.64 Total: -0.08 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.91 Total: -9.85 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.75 Total: -45.41 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.34 -8.39 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.138 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds