Wall clock time and date at job start Tue Mar 31 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 N 1.46503 * 109.46925 * 119.99303 * 2 1 3 5 5 C 1.46766 * 124.34473 * 120.00547 * 4 2 1 6 6 C 1.54486 * 105.47111 * 162.96460 * 5 4 2 7 7 C 1.54628 * 101.76443 * 25.41177 * 6 5 4 8 8 H 1.09003 * 110.48250 * 94.01782 * 7 6 5 9 9 N 1.46901 * 110.48345 * 216.52231 * 7 6 5 10 10 C 1.46852 * 110.99898 * 65.79661 * 9 7 6 11 11 C 1.53034 * 109.52360 * 185.83581 * 10 9 7 12 12 C 1.53120 * 109.27725 * 300.82215 * 11 10 9 13 13 C 1.53112 * 109.16467 * 57.65365 * 12 11 10 14 14 H 1.08997 * 109.53584 * 62.30496 * 13 12 11 15 15 C 1.50706 * 109.50467 * 182.40802 * 13 12 11 16 16 H 1.07999 * 120.00196 * 119.80348 * 15 13 12 17 17 C 1.37879 * 119.99394 * 299.80216 * 15 13 12 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 13 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 13 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.46849 * 110.99628 * 189.99852 * 9 7 6 24 24 C 1.34417 * 124.35162 * 299.98094 * 4 2 1 25 25 O 1.21274 * 124.94331 * 0.42560 * 24 4 2 26 26 H 1.09000 * 109.47780 * 300.00042 * 1 2 3 27 27 H 1.09000 * 109.46977 * 60.00822 * 1 2 3 28 28 H 1.08999 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47585 * 239.99397 * 2 1 3 30 30 H 1.08998 * 109.47456 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47357 * 299.99264 * 3 2 1 32 32 H 1.09004 * 109.47638 * 59.99609 * 3 2 1 33 33 H 1.08998 * 110.24863 * 43.96395 * 5 4 2 34 34 H 1.09000 * 110.31812 * 281.99907 * 5 4 2 35 35 H 1.09005 * 110.96789 * 267.29188 * 6 5 4 36 36 H 1.09002 * 110.97055 * 143.53635 * 6 5 4 37 37 H 1.08999 * 109.45713 * 305.85006 * 10 9 7 38 38 H 1.09004 * 109.46202 * 65.81514 * 10 9 7 39 39 H 1.09001 * 109.50586 * 60.75784 * 11 10 9 40 40 H 1.08992 * 109.50406 * 180.83922 * 11 10 9 41 41 H 1.09005 * 109.52058 * 297.74698 * 12 11 10 42 42 H 1.09003 * 109.52344 * 177.55927 * 12 11 10 43 43 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46232 * 54.15354 * 23 9 7 45 45 H 1.08996 * 109.45882 * 294.17231 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8886 1.1729 6 6 3.4727 -1.9917 2.5897 7 6 2.4209 -1.2409 3.4388 8 1 1.6989 -1.9414 3.8584 9 7 3.0750 -0.4761 4.5090 10 6 3.9015 0.6037 3.9545 11 6 4.6788 1.2841 5.0835 12 6 3.6912 1.8473 6.1092 13 6 2.8103 0.7108 6.6354 14 1 3.4316 -0.0264 7.1438 15 6 1.7960 1.2665 7.6017 16 1 0.7408 1.1573 7.3991 17 6 2.2153 1.9142 8.7443 18 7 1.3302 2.3986 9.5878 19 14 4.0403 2.1024 9.0951 20 1 4.5316 3.3691 8.4955 21 1 4.2619 2.1311 10.5632 22 1 4.7784 0.9568 8.5053 23 6 2.0871 0.0470 5.4612 24 6 1.7482 -0.3078 2.4562 25 8 1.0648 0.6465 2.7610 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 3.1299 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6765 1.9564 0.8900 33 1 3.6562 -1.7771 0.4309 34 1 2.2658 -2.7721 0.9544 35 1 4.4406 -1.4924 2.6366 36 1 3.5568 -3.0322 2.9034 37 1 4.6022 0.1890 3.2298 38 1 3.2607 1.3354 3.4623 39 1 5.3301 0.5561 5.5673 40 1 5.2807 2.0951 4.6737 41 1 3.0655 2.6036 5.6352 42 1 4.2413 2.2949 6.9370 43 1 1.6251 2.8540 10.3920 44 1 1.4700 -0.7719 5.8310 45 1 1.4551 0.7814 4.9620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:59 Heat of formation + Delta-G solvation = -51.957956 kcal Electronic energy + Delta-G solvation = -23796.653249 eV Core-core repulsion = 20619.877546 eV Total energy + Delta-G solvation = -3176.775703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01346 -39.45781 -37.47698 -36.38483 -34.84066 -33.40319 -32.06776 -30.17369 -28.17040 -27.99041 -26.92984 -24.78257 -23.37374 -23.24327 -21.93525 -20.66833 -19.68899 -18.85187 -17.80541 -17.64667 -16.86327 -16.37562 -15.96936 -15.78621 -15.34058 -15.09207 -15.00322 -14.75497 -14.59622 -14.30070 -14.08896 -13.97476 -13.59207 -13.44993 -13.05307 -12.93258 -12.88784 -12.78918 -12.65356 -12.29204 -12.21432 -12.08863 -11.88625 -11.84364 -11.71219 -11.46401 -11.07566 -10.96408 -10.81574 -10.62923 -9.66445 -9.11555 -8.31117 -6.35364 1.29683 1.35329 1.47790 1.57164 2.05813 2.32744 2.86033 3.04139 3.47088 3.66375 3.93316 3.96037 4.02909 4.06881 4.09052 4.17221 4.29059 4.32083 4.44863 4.52212 4.59226 4.66356 4.68593 4.76138 4.78930 4.80712 4.85297 4.86302 4.92473 4.95823 5.08723 5.16197 5.19280 5.21595 5.24598 5.28244 5.40883 5.60857 5.70727 5.77263 6.04328 6.09376 6.21578 6.32314 6.71203 7.24817 7.29684 8.86514 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.004930 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.533309 B = 5678.114985 C = 5930.969474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.163 4.163 4 N -0.615 5.615 5 C 0.102 3.898 6 C -0.111 4.111 7 C 0.040 3.960 8 H 0.111 0.889 9 N -0.507 5.507 10 C 0.058 3.942 11 C -0.111 4.111 12 C -0.122 4.122 13 C 0.024 3.976 14 H 0.034 0.966 15 C -0.522 4.522 16 H 0.023 0.977 17 C 0.010 3.990 18 N -0.953 5.953 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.296 1.296 22 H -0.239 1.239 23 C 0.083 3.917 24 C 0.481 3.519 25 O -0.569 6.569 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.012 0.988 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.039 0.961 43 H 0.266 0.734 44 H 0.054 0.946 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -11.214 -24.181 28.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C -0.221 4.221 4 N -0.350 5.350 5 C -0.020 4.020 6 C -0.149 4.149 7 C -0.073 4.073 8 H 0.129 0.871 9 N -0.230 5.230 10 C -0.070 4.070 11 C -0.149 4.149 12 C -0.159 4.159 13 C 0.005 3.995 14 H 0.052 0.948 15 C -0.561 4.561 16 H 0.041 0.959 17 C -0.186 4.186 18 N -0.594 5.594 19 Si 0.783 3.217 20 H -0.195 1.195 21 H -0.223 1.223 22 H -0.163 1.163 23 C -0.045 4.045 24 C 0.268 3.732 25 O -0.448 6.448 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.030 0.970 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.096 -10.930 -23.701 27.639 hybrid contribution -0.930 1.409 0.614 1.797 sum 8.166 -9.520 -23.087 26.274 Atomic orbital electron populations 1.22140 0.95610 1.02277 1.02181 1.21121 0.93931 0.92959 0.87291 1.22135 1.01439 0.96478 1.02088 1.48705 1.51407 1.29575 1.05275 1.22422 0.94444 0.86774 0.98367 1.22770 0.97503 1.02855 0.91785 1.22854 0.98055 0.95641 0.90732 0.87099 1.62379 1.21877 1.25166 1.13555 1.22156 0.96038 0.91963 0.96823 1.21610 0.97349 1.00149 0.95758 1.21907 0.97500 0.98738 0.97782 1.19051 0.94078 0.93716 0.92684 0.94767 1.21327 0.93033 1.36121 1.05584 0.95900 1.25930 1.02915 0.94422 0.95382 1.70073 1.36390 1.39874 1.13037 0.85713 0.80011 0.80089 0.75888 1.19541 1.22326 1.16300 1.21837 0.92954 0.97143 0.92536 1.22307 0.79918 0.85257 0.85758 1.90704 1.40788 1.31128 1.82195 0.95167 0.89660 0.91899 0.85580 0.91936 0.89675 0.95320 0.87415 0.88866 0.88876 0.86235 0.87827 0.97007 0.90392 0.90079 0.94865 0.94241 0.92521 0.92756 0.96346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.20 71.98 0.66 -2.63 16 2 C 0.15 2.62 3.48 44.99 0.16 2.77 16 3 C -0.16 -3.34 9.20 71.98 0.66 -2.68 16 4 N -0.61 -12.61 2.83 -794.04 -2.25 -14.86 16 5 C 0.10 1.14 7.30 86.83 0.63 1.78 16 6 C -0.11 -1.65 6.66 31.65 0.21 -1.44 16 7 C 0.04 1.07 3.00 44.91 0.13 1.20 16 8 H 0.11 3.00 7.98 -2.39 -0.02 2.98 16 9 N -0.51 -17.37 4.64 -871.13 -4.04 -21.41 16 10 C 0.06 1.85 4.70 86.32 0.41 2.25 16 11 C -0.11 -3.79 6.09 30.65 0.19 -3.60 16 12 C -0.12 -5.53 4.74 30.67 0.15 -5.39 16 13 C 0.02 1.20 1.85 -11.49 -0.02 1.18 16 14 H 0.03 1.72 7.19 -2.39 -0.02 1.70 16 15 C -0.52 -32.29 9.14 25.60 0.23 -32.06 16 16 H 0.02 1.58 7.99 -2.91 -0.02 1.55 16 17 C 0.01 0.61 5.45 84.66 0.46 1.08 16 18 N -0.95 -62.88 13.96 21.45 0.30 -62.58 16 19 Si 0.96 47.21 24.36 68.60 1.67 48.88 16 20 H -0.27 -12.71 6.89 99.48 0.69 -12.03 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.24 -10.82 6.53 99.48 0.65 -10.17 16 23 C 0.08 3.77 4.44 86.33 0.38 4.16 16 24 C 0.48 14.72 5.49 87.90 0.48 15.21 16 25 O -0.57 -23.81 12.46 -3.01 -0.04 -23.84 16 26 H 0.03 0.87 6.78 -2.39 -0.02 0.86 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.13 1.23 8.07 -2.39 -0.02 1.21 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 0.85 6.80 -2.38 -0.02 0.83 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 1.34 6.14 -2.38 -0.01 1.33 16 36 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 2.49 6.16 -2.39 -0.01 2.48 16 38 H 0.01 0.44 6.64 -2.39 -0.02 0.43 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.04 1.83 3.37 -2.39 -0.01 1.82 16 43 H 0.27 16.32 8.31 -92.70 -0.77 15.55 16 44 H 0.05 2.49 8.02 -2.39 -0.02 2.47 16 45 H 0.02 0.95 6.36 -2.39 -0.02 0.94 16 Total: -1.00 -81.18 330.72 1.26 -79.92 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.88 Total: 12.08 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.74 Total: -18.17 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -5.99 Total: -98.86 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.88 kcal Total: -81.18 1.26 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.960 kcal (2) G-P(sol) polarization free energy of solvation -81.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds