Wall clock time and date at job start Tue Mar 31 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46814 * 2 1 4 4 H 1.08998 * 109.47050 * 55.00114 * 3 2 1 5 5 C 1.50699 * 109.46733 * 174.99778 * 3 2 1 6 6 H 1.08007 * 119.99795 * 120.00481 * 5 3 2 7 7 C 1.37875 * 120.00369 * 300.27406 * 5 3 2 8 8 N 1.31515 * 119.99733 * 359.72685 * 7 5 3 9 9 Si 1.86798 * 120.00297 * 179.72612 * 7 5 3 10 10 H 1.48495 * 109.47204 * 90.00235 * 9 7 5 11 11 H 1.48504 * 109.47225 * 210.00286 * 9 7 5 12 12 H 1.48506 * 109.47069 * 330.00075 * 9 7 5 13 13 N 1.46493 * 109.47297 * 294.99794 * 3 2 1 14 14 C 1.34779 * 119.99880 * 85.00336 * 13 3 2 15 15 O 1.21282 * 120.00342 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99837 * 180.02562 * 14 13 3 17 17 H 1.08996 * 112.74876 * 49.23087 * 16 14 13 18 18 C 1.53517 * 113.47433 * 278.37729 * 16 14 13 19 19 C 1.53512 * 83.57466 * 219.21093 * 18 16 14 20 20 N 1.47480 * 113.47343 * 179.97438 * 16 14 13 21 21 C 1.46901 * 111.00143 * 253.46769 * 20 16 14 22 22 C 1.54267 * 110.03353 * 186.54396 * 21 20 16 23 23 C 1.54971 * 104.15727 * 217.13618 * 22 21 20 24 24 C 1.54883 * 102.77766 * 37.88634 * 23 22 21 25 25 C 1.53870 * 110.03177 * 69.32155 * 21 20 16 26 26 H 1.08998 * 109.47098 * 299.99986 * 1 2 3 27 27 H 1.08996 * 109.46957 * 60.00449 * 1 2 3 28 28 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47098 * 240.00014 * 2 1 3 30 30 H 1.08997 * 109.46953 * 120.00107 * 2 1 3 31 31 H 0.97003 * 120.00137 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00555 * 265.00594 * 13 3 2 33 33 H 1.08997 * 114.16827 * 332.85918 * 18 16 14 34 34 H 1.08995 * 114.17015 * 105.56117 * 18 16 14 35 35 H 1.09002 * 113.47653 * 271.26087 * 19 18 16 36 36 H 1.08999 * 113.53407 * 140.79641 * 19 18 16 37 37 H 1.09003 * 110.01205 * 307.93451 * 21 20 16 38 38 H 1.08993 * 110.48349 * 335.77841 * 22 21 20 39 39 H 1.09000 * 110.48548 * 98.42510 * 22 21 20 40 40 H 1.09006 * 110.71803 * 279.57249 * 23 22 21 41 41 H 1.08998 * 110.76250 * 156.22023 * 23 22 21 42 42 H 1.09007 * 110.48863 * 203.40705 * 24 23 22 43 43 H 1.09007 * 110.49036 * 80.76121 * 24 23 22 44 44 H 1.09000 * 110.03236 * 238.57223 * 25 21 20 45 45 H 1.09002 * 110.03684 * 359.95562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1435 0.8734 1.2253 8 7 3.4064 0.3320 2.1704 9 14 6.0054 0.8688 1.3752 10 1 6.4483 2.0983 2.0804 11 1 6.4372 -0.3258 2.1444 12 1 6.6111 0.8303 0.0197 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4344 16 6 0.0363 3.3377 -2.6548 17 1 0.2265 2.7178 -3.5310 18 6 0.5739 4.7694 -2.7884 19 6 -0.8042 5.0450 -3.4061 20 7 -1.3235 3.9077 -2.6231 21 6 -2.2526 3.0982 -3.4228 22 6 -3.6241 3.7989 -3.5096 23 6 -4.6479 2.6370 -3.4499 24 6 -4.0033 1.6645 -2.4313 25 6 -2.4933 1.7415 -2.7379 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8296 -0.0700 2.9451 32 1 2.2719 2.1231 -1.9978 33 1 0.7451 5.2724 -1.8368 34 1 1.4044 4.8709 -3.4869 35 1 -0.8378 4.8816 -4.4833 36 1 -1.2289 6.0048 -3.1120 37 1 -1.8477 2.9448 -4.4232 38 1 -3.7624 4.4726 -2.6640 39 1 -3.7163 4.3418 -4.4502 40 1 -4.7498 2.1624 -4.4259 41 1 -5.6134 2.9909 -3.0885 42 1 -4.3726 0.6505 -2.5855 43 1 -4.2026 1.9931 -1.4112 44 1 -2.2061 0.9297 -3.4062 45 1 -1.9202 1.6834 -1.8126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602139453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:20 Heat of formation + Delta-G solvation = -15.062357 kcal Electronic energy + Delta-G solvation = -23336.823955 eV Core-core repulsion = 20161.648165 eV Total energy + Delta-G solvation = -3175.175789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73472 -38.22642 -36.87591 -34.84840 -32.30070 -30.95934 -29.94151 -28.81435 -27.38349 -25.96960 -25.50416 -22.98484 -21.12642 -20.57382 -20.07131 -19.39713 -19.16230 -17.33950 -16.58455 -15.88742 -15.44789 -15.35565 -14.57528 -14.33611 -14.18671 -13.71394 -13.53028 -13.21058 -12.77737 -12.61898 -12.52098 -11.88338 -11.81707 -11.55865 -11.26105 -11.11833 -10.99473 -10.98496 -10.94585 -10.85937 -10.79868 -10.71185 -10.52780 -10.40420 -10.27975 -10.05676 -9.57128 -9.02453 -8.98452 -8.55208 -8.42701 -7.72331 -6.09507 -4.18715 3.25639 3.32435 3.33932 3.43666 3.78711 4.30638 4.40387 4.53356 4.65263 4.66592 4.86575 5.01404 5.21554 5.25721 5.29513 5.33453 5.43939 5.55101 5.57019 5.66508 5.68793 5.78634 5.82112 5.89148 5.96201 6.07760 6.10231 6.20504 6.32680 6.42637 6.42992 6.45469 6.60679 6.70988 7.08338 7.20213 7.25532 7.42238 7.53846 7.66282 7.79523 7.95485 8.22508 8.75873 8.84187 9.26237 9.49593 10.95701 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.004489 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.369915 B = 6235.401842 C = 7000.132660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.514 3.486 15 O -0.527 6.527 16 C 0.003 3.997 17 H 0.089 0.911 18 C -0.129 4.129 19 C -0.004 4.004 20 N -0.432 5.432 21 C 0.047 3.953 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.130 4.130 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.020 0.980 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 5.507 -13.556 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.297 3.703 15 O -0.403 6.403 16 C -0.110 4.110 17 H 0.107 0.893 18 C -0.167 4.167 19 C -0.133 4.133 20 N -0.155 5.155 21 C -0.062 4.062 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.168 4.168 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.619 5.448 -12.039 16.952 hybrid contribution 1.686 -0.342 -1.181 2.087 sum -8.932 5.106 -13.220 16.751 Atomic orbital electron populations 1.21857 0.98361 0.97897 1.01301 1.21930 0.92601 0.99931 1.02128 1.18728 0.94028 0.89049 0.81125 0.93409 1.21249 0.90840 1.38725 1.06333 0.92172 1.24881 0.98488 0.94861 0.95438 1.69898 1.35051 1.37590 1.09428 0.86481 0.85034 0.77618 0.78147 1.20593 1.21115 1.19897 1.46461 1.14817 1.56198 1.18460 1.19858 0.82810 0.79060 0.88576 1.90663 1.51277 1.58480 1.39895 1.23464 0.92380 0.97226 0.97939 0.89287 1.23092 0.96785 0.94311 1.02473 1.23759 0.95246 0.97551 0.96785 1.69067 1.03836 1.04752 1.37813 1.22901 0.94313 0.94428 0.94568 1.22343 0.93210 0.97787 1.01625 1.22482 0.98073 0.96327 0.99203 1.22264 0.94956 0.98805 0.99487 1.22323 0.97384 0.94684 1.02381 0.93157 0.94153 0.96045 0.95212 0.88377 0.92619 0.78288 0.88302 0.90113 0.91590 0.89528 0.93735 0.90377 0.92297 0.91930 0.91699 0.92102 0.91287 0.92571 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.83 2.24 -69.09 -0.16 6.68 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.77 11.28 55.43 0.63 -24.14 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.57 5.02 -54.94 -0.28 -14.85 16 14 C 0.51 10.07 5.35 -10.98 -0.06 10.01 16 15 O -0.53 -12.29 12.46 5.56 0.07 -12.22 16 16 C 0.00 0.04 2.99 -72.58 -0.22 -0.17 16 17 H 0.09 1.17 7.81 -51.93 -0.41 0.76 16 18 C -0.13 -1.60 8.00 -26.20 -0.21 -1.81 16 19 C 0.00 -0.05 7.44 -7.52 -0.06 -0.11 16 20 N -0.43 -6.25 5.43 -228.49 -1.24 -7.49 16 21 C 0.05 0.60 2.24 -66.60 -0.15 0.46 16 22 C -0.11 -1.25 6.26 -25.03 -0.16 -1.40 16 23 C -0.12 -1.28 6.91 -24.70 -0.17 -1.45 16 24 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 25 C -0.13 -1.86 6.18 -25.61 -0.16 -2.02 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 27 H 0.04 0.87 4.75 -51.93 -0.25 0.63 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.65 5.94 -51.93 -0.31 2.35 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 33 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.53 7.61 -51.93 -0.40 0.13 16 38 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.74 4.67 -51.93 -0.24 1.49 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -29.71 343.55 -10.15 -39.86 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.76 Total: 8.21 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.73 Total: -10.10 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.89 Total: -46.48 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.71 -10.15 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602139453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.794 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds