Wall clock time and date at job start Tue Mar 31 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46814 * 2 1 4 4 H 1.08998 * 109.47050 * 55.00114 * 3 2 1 5 5 C 1.50699 * 109.46733 * 174.99778 * 3 2 1 6 6 H 1.08007 * 119.99795 * 120.00481 * 5 3 2 7 7 C 1.37875 * 120.00369 * 300.27406 * 5 3 2 8 8 N 1.31515 * 119.99733 * 359.72685 * 7 5 3 9 9 Si 1.86798 * 120.00297 * 179.72612 * 7 5 3 10 10 H 1.48495 * 109.47204 * 90.00235 * 9 7 5 11 11 H 1.48504 * 109.47225 * 210.00286 * 9 7 5 12 12 H 1.48506 * 109.47069 * 330.00075 * 9 7 5 13 13 N 1.46493 * 109.47297 * 294.99794 * 3 2 1 14 14 C 1.34779 * 119.99880 * 85.00336 * 13 3 2 15 15 O 1.21282 * 120.00342 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99837 * 180.02562 * 14 13 3 17 17 H 1.08996 * 112.74876 * 49.23087 * 16 14 13 18 18 C 1.53517 * 113.47433 * 278.37729 * 16 14 13 19 19 C 1.53512 * 83.57466 * 219.21093 * 18 16 14 20 20 N 1.47480 * 113.47343 * 179.97438 * 16 14 13 21 21 C 1.46901 * 111.00143 * 253.46769 * 20 16 14 22 22 C 1.54267 * 110.03353 * 186.54396 * 21 20 16 23 23 C 1.54971 * 104.15727 * 217.13618 * 22 21 20 24 24 C 1.54883 * 102.77766 * 37.88634 * 23 22 21 25 25 C 1.53870 * 110.03177 * 69.32155 * 21 20 16 26 26 H 1.08998 * 109.47098 * 299.99986 * 1 2 3 27 27 H 1.08996 * 109.46957 * 60.00449 * 1 2 3 28 28 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47098 * 240.00014 * 2 1 3 30 30 H 1.08997 * 109.46953 * 120.00107 * 2 1 3 31 31 H 0.97003 * 120.00137 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00555 * 265.00594 * 13 3 2 33 33 H 1.08997 * 114.16827 * 332.85918 * 18 16 14 34 34 H 1.08995 * 114.17015 * 105.56117 * 18 16 14 35 35 H 1.09002 * 113.47653 * 271.26087 * 19 18 16 36 36 H 1.08999 * 113.53407 * 140.79641 * 19 18 16 37 37 H 1.09003 * 110.01205 * 307.93451 * 21 20 16 38 38 H 1.08993 * 110.48349 * 335.77841 * 22 21 20 39 39 H 1.09000 * 110.48548 * 98.42510 * 22 21 20 40 40 H 1.09006 * 110.71803 * 279.57249 * 23 22 21 41 41 H 1.08998 * 110.76250 * 156.22023 * 23 22 21 42 42 H 1.09007 * 110.48863 * 203.40705 * 24 23 22 43 43 H 1.09007 * 110.49036 * 80.76121 * 24 23 22 44 44 H 1.09000 * 110.03236 * 238.57223 * 25 21 20 45 45 H 1.09002 * 110.03684 * 359.95562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1435 0.8734 1.2253 8 7 3.4064 0.3320 2.1704 9 14 6.0054 0.8688 1.3752 10 1 6.4483 2.0983 2.0804 11 1 6.4372 -0.3258 2.1444 12 1 6.6111 0.8303 0.0197 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4344 16 6 0.0363 3.3377 -2.6548 17 1 0.2265 2.7178 -3.5310 18 6 0.5739 4.7694 -2.7884 19 6 -0.8042 5.0450 -3.4061 20 7 -1.3235 3.9077 -2.6231 21 6 -2.2526 3.0982 -3.4228 22 6 -3.6241 3.7989 -3.5096 23 6 -4.6479 2.6370 -3.4499 24 6 -4.0033 1.6645 -2.4313 25 6 -2.4933 1.7415 -2.7379 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8296 -0.0700 2.9451 32 1 2.2719 2.1231 -1.9978 33 1 0.7451 5.2724 -1.8368 34 1 1.4044 4.8709 -3.4869 35 1 -0.8378 4.8816 -4.4833 36 1 -1.2289 6.0048 -3.1120 37 1 -1.8477 2.9448 -4.4232 38 1 -3.7624 4.4726 -2.6640 39 1 -3.7163 4.3418 -4.4502 40 1 -4.7498 2.1624 -4.4259 41 1 -5.6134 2.9909 -3.0885 42 1 -4.3726 0.6505 -2.5855 43 1 -4.2026 1.9931 -1.4112 44 1 -2.2061 0.9297 -3.4062 45 1 -1.9202 1.6834 -1.8126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602139453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:19 Heat of formation + Delta-G solvation = -35.189869 kcal Electronic energy + Delta-G solvation = -23337.696749 eV Core-core repulsion = 20161.648165 eV Total energy + Delta-G solvation = -3176.048584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88526 -39.75962 -37.89436 -36.72107 -34.23171 -32.81553 -30.96791 -29.84265 -29.11854 -27.36544 -26.50031 -24.91367 -22.57344 -21.48757 -21.41278 -20.89288 -20.49290 -18.97784 -17.66177 -17.52981 -17.19054 -16.47819 -16.22902 -15.86685 -15.29447 -15.14851 -14.81821 -14.52706 -14.28048 -14.04215 -13.54894 -13.53353 -13.40206 -13.17511 -12.86984 -12.79028 -12.69147 -12.28385 -12.14936 -12.09311 -11.94497 -11.90410 -11.76628 -11.64515 -11.53758 -11.45309 -11.41356 -11.03663 -10.56052 -10.36260 -9.68944 -9.53554 -8.14468 -6.31976 1.45147 1.45446 1.56115 1.94751 2.34973 2.57130 3.14048 3.21915 3.41762 3.68788 3.71849 3.87157 4.04841 4.16029 4.25986 4.39098 4.44325 4.48041 4.53568 4.55460 4.59049 4.73097 4.75859 4.81208 4.85400 4.91769 5.03144 5.04753 5.06002 5.10864 5.14226 5.21489 5.25043 5.37629 5.44348 5.48445 5.52346 5.58424 5.68346 5.81633 5.98428 6.19613 6.23784 6.77305 7.12042 7.36234 7.72631 8.90783 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.004489 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.369915 B = 6235.401842 C = 7000.132660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.007 1.007 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.509 3.491 15 O -0.570 6.570 16 C 0.008 3.992 17 H 0.115 0.885 18 C -0.123 4.123 19 C 0.008 3.992 20 N -0.466 5.466 21 C 0.047 3.953 22 C -0.107 4.107 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.134 4.134 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 6.226 -16.932 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.358 5.358 14 C 0.295 3.705 15 O -0.450 6.450 16 C -0.105 4.105 17 H 0.133 0.867 18 C -0.161 4.161 19 C -0.120 4.120 20 N -0.189 5.189 21 C -0.062 4.062 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.172 4.172 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.279 6.189 -15.460 19.570 hybrid contribution 1.518 -0.560 -0.079 1.620 sum -8.761 5.629 -15.539 18.706 Atomic orbital electron populations 1.21673 0.97096 0.98798 1.00234 1.21770 0.93590 0.99378 1.01099 1.18269 0.93483 0.88921 0.81498 0.98954 1.21604 0.91501 1.38605 1.06773 0.90993 1.25781 1.03299 0.94409 0.95047 1.70062 1.37058 1.38392 1.09984 0.85383 0.79169 0.77359 0.78647 1.20473 1.21069 1.18301 1.46231 1.15848 1.56312 1.17399 1.20798 0.81614 0.77998 0.90053 1.90646 1.52358 1.59849 1.42110 1.23480 0.93509 0.98195 0.95319 0.86749 1.23092 0.98866 0.91914 1.02273 1.23792 0.93591 0.96611 0.97985 1.69041 1.03849 1.06108 1.39910 1.22972 0.94989 0.93374 0.94864 1.22327 0.92339 0.97721 1.02133 1.22465 0.98084 0.95382 0.99276 1.22266 0.94365 1.00097 0.99070 1.22315 0.97815 0.96361 1.00684 0.95998 0.93458 0.93965 0.94154 0.91208 0.92701 0.76507 0.90729 0.86981 0.88559 0.88913 0.91648 0.92202 0.89755 0.90025 0.90696 0.91172 0.93601 0.91839 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.68 2.24 44.25 0.10 14.78 16 4 H -0.01 -0.47 7.58 -2.39 -0.02 -0.48 16 5 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.79 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.19 11.28 21.45 0.24 -52.95 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.28 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 13 N -0.71 -29.38 5.02 -446.11 -2.24 -31.62 16 14 C 0.51 20.32 5.35 87.66 0.47 20.79 16 15 O -0.57 -28.07 12.46 -3.03 -0.04 -28.11 16 16 C 0.01 0.22 2.99 41.44 0.12 0.34 16 17 H 0.12 2.64 7.81 -2.39 -0.02 2.62 16 18 C -0.12 -2.78 8.00 30.94 0.25 -2.53 16 19 C 0.01 0.16 7.44 83.57 0.62 0.78 16 20 N -0.47 -12.80 5.43 -876.82 -4.76 -17.56 16 21 C 0.05 1.09 2.24 45.64 0.10 1.20 16 22 C -0.11 -2.12 6.26 31.70 0.20 -1.92 16 23 C -0.11 -2.10 6.91 31.91 0.22 -1.88 16 24 C -0.12 -2.94 6.83 31.67 0.22 -2.72 16 25 C -0.13 -3.75 6.18 31.32 0.19 -3.56 16 26 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 27 H 0.05 2.12 4.75 -2.39 -0.01 2.11 16 28 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.94 5.94 -2.39 -0.01 3.93 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.40 14.02 8.54 -92.71 -0.79 13.23 16 33 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 1.32 7.68 -2.39 -0.02 1.30 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.26 7.61 -2.39 -0.02 1.25 16 38 H 0.06 1.40 8.05 -2.39 -0.02 1.38 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 1.99 4.67 -2.39 -0.01 1.98 16 Total: -1.00 -68.51 343.55 -0.66 -69.17 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.17 Total: 30.03 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.94 Total: -13.25 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -6.76 Total: -102.13 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.11 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -68.51 -0.66 -69.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602139453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.977 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds