Wall clock time and date at job start Tue Mar 31 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47042 * 2 1 4 4 H 1.08997 * 109.47319 * 305.00583 * 3 2 1 5 5 C 1.50700 * 109.47414 * 185.00033 * 3 2 1 6 6 H 1.07998 * 120.00371 * 240.00432 * 5 3 2 7 7 C 1.37880 * 119.99807 * 60.00296 * 5 3 2 8 8 N 1.31515 * 119.99998 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00242 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47370 * 89.99449 * 9 7 5 11 11 H 1.48501 * 109.47147 * 209.99792 * 9 7 5 12 12 H 1.48503 * 109.46870 * 329.99838 * 9 7 5 13 13 N 1.46499 * 109.46960 * 65.00403 * 3 2 1 14 14 C 1.34781 * 120.00249 * 274.99768 * 13 3 2 15 15 O 1.21286 * 119.99777 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00392 * 179.97438 * 14 13 3 17 17 H 1.08997 * 112.74597 * 310.04416 * 16 14 13 18 18 C 1.53512 * 113.52655 * 80.86669 * 16 14 13 19 19 C 1.53519 * 83.57594 * 88.75300 * 18 16 14 20 20 N 1.47474 * 87.92855 * 26.02181 * 19 18 16 21 21 C 1.46905 * 110.99872 * 221.29930 * 20 19 18 22 22 C 1.54268 * 110.03165 * 265.34646 * 21 20 19 23 23 C 1.54890 * 104.19522 * 217.10620 * 22 21 20 24 24 C 1.54882 * 102.75084 * 37.93918 * 23 22 21 25 25 C 1.53876 * 110.03451 * 148.17680 * 21 20 19 26 26 H 1.08993 * 109.47193 * 59.99613 * 1 2 3 27 27 H 1.08998 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46777 * 299.99599 * 1 2 3 29 29 H 1.08998 * 109.46777 * 240.00401 * 2 1 3 30 30 H 1.08993 * 109.47193 * 120.00387 * 2 1 3 31 31 H 0.96998 * 120.00424 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00310 * 94.99931 * 13 3 2 33 33 H 1.09007 * 114.16931 * 202.39371 * 18 16 14 34 34 H 1.08995 * 114.17795 * 335.10390 * 18 16 14 35 35 H 1.09003 * 113.47336 * 271.25577 * 19 18 16 36 36 H 1.08997 * 113.47794 * 140.78815 * 19 18 16 37 37 H 1.08999 * 110.01504 * 26.77984 * 21 20 19 38 38 H 1.09006 * 110.48840 * 335.77943 * 22 21 20 39 39 H 1.08997 * 110.49375 * 98.42432 * 22 21 20 40 40 H 1.09000 * 110.75359 * 279.62521 * 23 22 21 41 41 H 1.09003 * 110.75632 * 156.25577 * 23 22 21 42 42 H 1.08995 * 110.48740 * 203.38223 * 24 23 22 43 43 H 1.08997 * 110.59841 * 80.79508 * 24 23 22 44 44 H 1.08998 * 110.03165 * 238.56789 * 25 21 20 45 45 H 1.09000 * 110.03016 * 359.95166 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8802 -1.3813 10 1 6.5540 -0.3518 -0.7600 11 1 6.3834 0.9216 -2.8167 12 1 6.5575 2.0721 -0.6891 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3393 2.6327 0.4343 16 6 0.0363 3.3375 2.6550 17 1 0.2149 2.7127 3.5301 18 6 0.5886 4.7627 2.7982 19 6 -0.7090 5.1529 2.0765 20 7 -1.3167 3.9230 2.6174 21 6 -2.1498 3.2586 1.6061 22 6 -3.6209 3.6958 1.7631 23 6 -4.4334 2.4147 1.4506 24 6 -3.5730 1.2989 2.0939 25 6 -2.1193 1.7346 1.8164 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9978 33 1 0.6503 5.1161 3.8275 34 1 1.4940 4.9506 2.2212 35 1 -0.6190 5.1514 0.9902 36 1 -1.1620 6.0666 2.4612 37 1 -1.7910 3.5050 0.6068 38 1 -3.8129 4.0300 2.7828 39 1 -3.8628 4.4843 1.0504 40 1 -4.5189 2.2645 0.3744 41 1 -5.4185 2.4591 1.9151 42 1 -3.7798 0.3382 1.6225 43 1 -3.7565 1.2437 3.1669 44 1 -1.7466 1.2412 0.9188 45 1 -1.4857 1.4879 2.6683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602139455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:22 Heat of formation + Delta-G solvation = 13.831332 kcal Electronic energy + Delta-G solvation = -24005.933737 eV Core-core repulsion = 20832.010872 eV Total energy + Delta-G solvation = -3173.922865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32786 -37.80893 -36.77869 -35.00837 -32.49337 -31.10164 -29.65231 -28.69729 -27.29873 -25.90268 -25.28729 -23.12099 -21.49578 -20.53240 -20.13063 -19.30621 -19.11246 -16.92806 -16.25431 -16.00619 -15.59596 -15.33070 -14.76782 -14.33420 -14.11623 -13.81134 -13.62042 -12.92721 -12.77791 -12.68669 -12.37907 -11.95625 -11.67569 -11.56076 -11.29780 -11.03934 -10.92140 -10.85103 -10.83775 -10.76075 -10.62152 -10.43406 -10.32422 -10.26563 -10.03479 -9.95728 -9.58399 -9.45372 -9.08693 -8.54717 -7.93402 -7.78404 -6.16064 -4.25795 3.19307 3.21757 3.28912 3.30598 3.98016 4.19644 4.33279 4.61909 4.88929 4.98114 5.05565 5.15356 5.21863 5.39324 5.52778 5.58222 5.69908 5.79080 5.81266 5.89297 5.91800 6.00522 6.06371 6.10264 6.15175 6.24498 6.30725 6.34776 6.41944 6.45252 6.57824 6.60481 6.68589 6.81116 7.04497 7.15957 7.32643 7.36948 7.46672 7.57882 7.68290 7.85837 8.14526 8.60534 8.73317 9.07956 9.41854 10.88952 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.005172 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.913692 B = 5412.172102 C = 6160.359060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.498 3.502 15 O -0.537 6.537 16 C 0.002 3.998 17 H 0.106 0.894 18 C -0.133 4.133 19 C -0.004 4.004 20 N -0.449 5.449 21 C 0.035 3.965 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 5.326 9.088 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.282 3.718 15 O -0.418 6.418 16 C -0.111 4.111 17 H 0.124 0.876 18 C -0.171 4.171 19 C -0.133 4.133 20 N -0.171 5.171 21 C -0.073 4.073 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.162 4.162 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.627 5.190 8.796 14.035 hybrid contribution 1.717 -0.249 -0.413 1.784 sum -7.910 4.941 8.383 12.540 Atomic orbital electron populations 1.22136 0.98499 0.98319 1.01802 1.21919 0.92628 0.99785 1.02244 1.18783 0.94202 0.89146 0.80928 0.93347 1.21228 0.90739 1.39095 1.06267 0.92120 1.24877 0.98575 0.94778 0.95368 1.69889 1.35142 1.37533 1.09377 0.86471 0.84913 0.78470 0.77392 1.20538 1.21080 1.19854 1.46585 1.14405 1.55212 1.18515 1.20551 0.82852 0.79475 0.88920 1.90557 1.49510 1.60483 1.41220 1.23237 0.92760 0.97678 0.97470 0.87612 1.23102 0.98076 0.93973 1.01996 1.23847 0.94362 0.95799 0.99328 1.69218 1.06284 1.03435 1.38114 1.23450 0.92141 0.94060 0.97628 1.22441 0.95261 0.96868 1.01010 1.22413 0.97710 0.95318 1.00384 1.22355 0.96164 0.97919 0.99794 1.22759 0.95596 0.95285 1.02512 0.93196 0.95947 0.92644 0.88378 0.95118 0.92559 0.77958 0.88544 0.90169 0.90692 0.90145 0.87046 0.91602 0.92733 0.91773 0.92367 0.92401 0.92463 0.88362 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 7.75 37.16 0.29 -2.90 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.34 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -13.58 5.02 -54.93 -0.28 -13.86 16 14 C 0.50 8.97 4.55 -10.98 -0.05 8.92 16 15 O -0.54 -10.91 7.77 5.55 0.04 -10.87 16 16 C 0.00 0.03 3.34 -72.58 -0.24 -0.22 16 17 H 0.11 1.43 8.08 -51.93 -0.42 1.01 16 18 C -0.13 -1.65 8.05 -26.20 -0.21 -1.86 16 19 C 0.00 -0.06 7.40 -7.54 -0.06 -0.11 16 20 N -0.45 -6.55 6.15 -228.57 -1.41 -7.96 16 21 C 0.04 0.55 1.97 -66.59 -0.13 0.42 16 22 C -0.12 -1.61 6.54 -25.07 -0.16 -1.77 16 23 C -0.12 -1.54 6.91 -24.74 -0.17 -1.71 16 24 C -0.12 -1.71 6.83 -25.07 -0.17 -1.89 16 25 C -0.12 -1.99 4.05 -25.61 -0.10 -2.10 16 26 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.11 3.21 -51.93 -0.17 0.94 16 29 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.39 6.68 8.54 -40.82 -0.35 6.33 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.07 1.14 7.06 -51.93 -0.37 0.77 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.11 2.04 4.77 -53.95 -0.26 1.79 16 38 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.80 3.99 -51.93 -0.21 1.59 16 45 H 0.05 0.88 6.65 -51.93 -0.35 0.54 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -27.13 329.36 -10.18 -37.31 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.41 Total: 11.11 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.71 Total: -12.31 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -1.06 Total: -45.41 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.04 Total: -10.87 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.13 -10.18 -37.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602139455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.143 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds