Wall clock time and date at job start Tue Mar 31 2020 01:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47042 * 2 1 4 4 H 1.08997 * 109.47319 * 305.00583 * 3 2 1 5 5 C 1.50700 * 109.47414 * 185.00033 * 3 2 1 6 6 H 1.07998 * 120.00371 * 240.00432 * 5 3 2 7 7 C 1.37880 * 119.99807 * 60.00296 * 5 3 2 8 8 N 1.31515 * 119.99998 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00242 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47370 * 89.99449 * 9 7 5 11 11 H 1.48501 * 109.47147 * 209.99792 * 9 7 5 12 12 H 1.48503 * 109.46870 * 329.99838 * 9 7 5 13 13 N 1.46499 * 109.46960 * 65.00403 * 3 2 1 14 14 C 1.34781 * 120.00249 * 274.99768 * 13 3 2 15 15 O 1.21286 * 119.99777 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00392 * 179.97438 * 14 13 3 17 17 H 1.08997 * 112.74597 * 310.04416 * 16 14 13 18 18 C 1.53512 * 113.52655 * 80.86669 * 16 14 13 19 19 C 1.53519 * 83.57594 * 88.75300 * 18 16 14 20 20 N 1.47474 * 87.92855 * 26.02181 * 19 18 16 21 21 C 1.46905 * 110.99872 * 221.29930 * 20 19 18 22 22 C 1.54268 * 110.03165 * 265.34646 * 21 20 19 23 23 C 1.54890 * 104.19522 * 217.10620 * 22 21 20 24 24 C 1.54882 * 102.75084 * 37.93918 * 23 22 21 25 25 C 1.53876 * 110.03451 * 148.17680 * 21 20 19 26 26 H 1.08993 * 109.47193 * 59.99613 * 1 2 3 27 27 H 1.08998 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46777 * 299.99599 * 1 2 3 29 29 H 1.08998 * 109.46777 * 240.00401 * 2 1 3 30 30 H 1.08993 * 109.47193 * 120.00387 * 2 1 3 31 31 H 0.96998 * 120.00424 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00310 * 94.99931 * 13 3 2 33 33 H 1.09007 * 114.16931 * 202.39371 * 18 16 14 34 34 H 1.08995 * 114.17795 * 335.10390 * 18 16 14 35 35 H 1.09003 * 113.47336 * 271.25577 * 19 18 16 36 36 H 1.08997 * 113.47794 * 140.78815 * 19 18 16 37 37 H 1.08999 * 110.01504 * 26.77984 * 21 20 19 38 38 H 1.09006 * 110.48840 * 335.77943 * 22 21 20 39 39 H 1.08997 * 110.49375 * 98.42432 * 22 21 20 40 40 H 1.09000 * 110.75359 * 279.62521 * 23 22 21 41 41 H 1.09003 * 110.75632 * 156.25577 * 23 22 21 42 42 H 1.08995 * 110.48740 * 203.38223 * 24 23 22 43 43 H 1.08997 * 110.59841 * 80.79508 * 24 23 22 44 44 H 1.08998 * 110.03165 * 238.56789 * 25 21 20 45 45 H 1.09000 * 110.03016 * 359.95166 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8802 -1.3813 10 1 6.5540 -0.3518 -0.7600 11 1 6.3834 0.9216 -2.8167 12 1 6.5575 2.0721 -0.6891 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3393 2.6327 0.4343 16 6 0.0363 3.3375 2.6550 17 1 0.2149 2.7127 3.5301 18 6 0.5886 4.7627 2.7982 19 6 -0.7090 5.1529 2.0765 20 7 -1.3167 3.9230 2.6174 21 6 -2.1498 3.2586 1.6061 22 6 -3.6209 3.6958 1.7631 23 6 -4.4334 2.4147 1.4506 24 6 -3.5730 1.2989 2.0939 25 6 -2.1193 1.7346 1.8164 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0617 -2.9496 32 1 2.2720 2.1230 1.9978 33 1 0.6503 5.1161 3.8275 34 1 1.4940 4.9506 2.2212 35 1 -0.6190 5.1514 0.9902 36 1 -1.1620 6.0666 2.4612 37 1 -1.7910 3.5050 0.6068 38 1 -3.8129 4.0300 2.7828 39 1 -3.8628 4.4843 1.0504 40 1 -4.5189 2.2645 0.3744 41 1 -5.4185 2.4591 1.9151 42 1 -3.7798 0.3382 1.6225 43 1 -3.7565 1.2437 3.1669 44 1 -1.7466 1.2412 0.9188 45 1 -1.4857 1.4879 2.6683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602139455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:21 Heat of formation + Delta-G solvation = -4.243143 kcal Electronic energy + Delta-G solvation = -24006.717505 eV Core-core repulsion = 20832.010872 eV Total energy + Delta-G solvation = -3174.706633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.60649 -39.30114 -37.91721 -36.74917 -34.33017 -32.88521 -30.83050 -29.94705 -28.98657 -27.29753 -26.41274 -24.96416 -22.96379 -21.73531 -21.50086 -20.84149 -20.51805 -18.59629 -17.55105 -17.41144 -17.14483 -16.79001 -16.35059 -15.79063 -15.50985 -15.08894 -14.96597 -14.56193 -14.20072 -14.02669 -13.72696 -13.44949 -13.35795 -13.17091 -12.91177 -12.75504 -12.64565 -12.27094 -12.10795 -12.01202 -11.92827 -11.79701 -11.66983 -11.57364 -11.40074 -11.23874 -11.12693 -11.04107 -10.90053 -10.53147 -9.57825 -9.20116 -8.15990 -6.33292 1.44002 1.44674 1.54716 1.78007 2.34754 2.60990 3.04161 3.13436 3.48447 3.75106 3.84416 3.94842 4.01398 4.19641 4.40397 4.46545 4.48657 4.57098 4.57594 4.63527 4.75595 4.76417 4.84061 4.84757 4.90098 4.94051 5.02362 5.08113 5.10688 5.16582 5.22139 5.24529 5.29207 5.39580 5.44370 5.48923 5.57488 5.62764 5.71751 5.80897 5.95617 6.16735 6.19894 6.75787 7.00853 7.34586 7.62175 8.88634 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.005172 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.913692 B = 5412.172102 C = 6160.359060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.283 3.717 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.701 5.701 14 C 0.495 3.505 15 O -0.561 6.561 16 C 0.001 3.999 17 H 0.125 0.875 18 C -0.116 4.116 19 C -0.007 4.007 20 N -0.442 5.442 21 C 0.037 3.963 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.123 4.123 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 6.143 11.609 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.349 5.349 14 C 0.281 3.719 15 O -0.442 6.442 16 C -0.112 4.112 17 H 0.143 0.857 18 C -0.154 4.154 19 C -0.136 4.136 20 N -0.164 5.164 21 C -0.071 4.071 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.161 4.161 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.725 6.027 11.350 16.116 hybrid contribution 1.686 -0.469 -1.226 2.137 sum -8.039 5.558 10.124 14.072 Atomic orbital electron populations 1.21992 0.96884 0.99105 1.01326 1.21767 0.93971 0.99291 1.00925 1.18288 0.93393 0.88958 0.81411 0.98344 1.21595 0.91651 1.38739 1.06516 0.91139 1.25733 1.03073 0.94455 0.95088 1.70047 1.36973 1.38447 1.09916 0.85423 0.79452 0.78855 0.77082 1.19828 1.21402 1.18831 1.46344 1.15505 1.55671 1.17426 1.21256 0.81834 0.78748 0.90036 1.90604 1.50063 1.60898 1.42655 1.23242 0.93303 0.99057 0.95574 0.85680 1.23151 0.97122 0.91560 1.03545 1.23865 0.95383 0.96297 0.98098 1.69258 1.05945 1.03722 1.37453 1.23274 0.93654 0.94016 0.96186 1.22394 0.93710 0.97372 1.01528 1.22414 0.98573 0.94347 1.00154 1.22348 0.94575 0.98317 1.00714 1.22645 0.97121 0.95469 1.00861 0.95636 0.94391 0.91216 0.91419 0.94473 0.92718 0.76471 0.85307 0.90595 0.93251 0.87822 0.90347 0.90803 0.92427 0.92466 0.90015 0.92184 0.91165 0.91192 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 7.75 71.98 0.56 -5.40 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 3 C 0.28 14.02 2.24 44.24 0.10 14.12 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 5 C -0.55 -28.29 8.73 25.60 0.22 -28.07 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -51.96 11.29 21.45 0.24 -51.71 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.64 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 N -0.70 -27.36 5.02 -446.10 -2.24 -29.60 16 14 C 0.49 17.94 4.55 87.66 0.40 18.34 16 15 O -0.56 -23.71 7.77 -3.05 -0.02 -23.73 16 16 C 0.00 0.04 3.34 41.45 0.14 0.17 16 17 H 0.13 3.00 8.08 -2.39 -0.02 2.98 16 18 C -0.12 -2.56 8.05 30.94 0.25 -2.31 16 19 C -0.01 -0.19 7.40 83.58 0.62 0.43 16 20 N -0.44 -12.11 6.15 -877.06 -5.40 -17.50 16 21 C 0.04 1.14 1.97 45.64 0.09 1.23 16 22 C -0.11 -2.87 6.54 31.67 0.21 -2.66 16 23 C -0.12 -2.79 6.91 31.88 0.22 -2.57 16 24 C -0.12 -3.16 6.83 31.67 0.22 -2.94 16 25 C -0.12 -3.90 4.05 31.32 0.13 -3.78 16 26 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 2.84 3.21 -2.39 -0.01 2.83 16 29 H 0.07 3.72 5.95 -2.39 -0.01 3.70 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.40 13.46 8.54 -92.71 -0.79 12.67 16 33 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.05 1.51 7.06 -2.39 -0.02 1.50 16 36 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.98 4.77 -34.32 -0.16 2.82 16 38 H 0.07 1.79 8.05 -2.38 -0.02 1.77 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 2.62 3.99 -2.39 -0.01 2.61 16 45 H 0.05 1.57 6.65 -2.39 -0.02 1.56 16 Total: -1.00 -60.64 329.36 -1.59 -62.23 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.04 Total: 34.45 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 3.76 Total: -17.77 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -7.39 Total: -98.82 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.02 Total: -23.73 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -60.64 -1.59 -62.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602139455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.988 kcal (2) G-P(sol) polarization free energy of solvation -60.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds