Wall clock time and date at job start Tue Mar 31 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47227 * 2 1 4 4 N 1.46503 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.47254 * 120.07283 * 90.00273 * 4 3 2 6 6 C 1.53104 * 108.40007 * 109.99612 * 5 4 3 7 7 C 1.51681 * 110.75859 * 85.59272 * 6 5 4 8 8 N 1.45757 * 113.93549 * 293.22038 * 7 6 5 9 9 C 1.46902 * 110.99930 * 192.72447 * 8 7 6 10 10 C 1.53002 * 109.46991 * 158.28519 * 9 8 7 11 11 C 1.50695 * 115.55176 * 298.36013 * 10 9 8 12 12 H 1.08000 * 120.00120 * 211.63627 * 11 10 9 13 13 C 1.37873 * 119.99816 * 31.62956 * 11 10 9 14 14 N 1.31518 * 120.00217 * 43.06505 * 13 11 10 15 15 Si 1.86805 * 120.00077 * 223.05471 * 13 11 10 16 16 H 1.48498 * 109.47323 * 270.00479 * 15 13 11 17 17 H 1.48504 * 109.46975 * 30.00598 * 15 13 11 18 18 H 1.48497 * 109.47027 * 150.00301 * 15 13 11 19 19 C 1.52999 * 117.49449 * 84.03228 * 10 9 8 20 20 C 1.52997 * 117.49621 * 152.68958 * 10 9 8 21 21 C 1.46876 * 112.43432 * 67.71582 * 8 7 6 22 22 C 1.33608 * 120.07857 * 269.98084 * 4 3 2 23 23 O 1.21278 * 119.88391 * 359.49296 * 22 4 3 24 24 H 1.08997 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47106 * 300.00117 * 1 2 3 26 26 H 1.09006 * 109.46630 * 59.99770 * 1 2 3 27 27 H 1.09005 * 109.47178 * 239.99797 * 2 1 3 28 28 H 1.08997 * 109.46832 * 120.00017 * 2 1 3 29 29 H 1.09005 * 109.47207 * 59.99815 * 3 2 1 30 30 H 1.08997 * 109.47229 * 299.99774 * 3 2 1 31 31 H 1.08999 * 109.68071 * 350.26107 * 5 4 3 32 32 H 1.09007 * 109.70630 * 229.74112 * 5 4 3 33 33 H 1.09004 * 109.22297 * 325.25531 * 6 5 4 34 34 H 1.09001 * 109.21980 * 205.91723 * 6 5 4 35 35 H 1.09010 * 108.59194 * 172.07593 * 7 6 5 36 36 H 1.08997 * 108.48147 * 54.29504 * 7 6 5 37 37 H 1.09003 * 109.46850 * 38.28660 * 9 8 7 38 38 H 1.08995 * 109.47292 * 278.29041 * 9 8 7 39 39 H 0.96999 * 119.99706 * 186.64282 * 14 13 11 40 40 H 1.09005 * 117.49447 * 214.99950 * 19 10 9 41 41 H 1.08998 * 117.50093 * 0.02562 * 19 10 9 42 42 H 1.09001 * 117.50131 * 359.97438 * 20 10 9 43 43 H 1.09002 * 117.50260 * 144.99807 * 20 10 9 44 44 H 1.09008 * 109.60472 * 33.97838 * 21 8 7 45 45 H 1.08997 * 109.60293 * 154.45825 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2435 1.4423 -1.2734 6 6 4.9157 2.8075 -1.4425 7 6 6.2597 2.8357 -0.7401 8 7 6.1702 2.7439 0.7118 9 6 7.4555 3.0765 1.3406 10 6 7.2192 3.4983 2.7922 11 6 6.3613 4.7227 2.9818 12 1 6.5346 5.3786 3.8221 13 6 5.3554 5.0056 2.0823 14 7 4.5729 4.0426 1.6465 15 14 5.1037 6.7569 1.4829 16 1 4.1548 7.4574 2.3852 17 1 6.4054 7.4717 1.4821 18 1 4.5509 6.7337 0.1048 19 6 7.1099 2.3898 3.8410 20 6 8.3589 3.2732 3.7877 21 6 5.6882 1.4315 1.1618 22 6 4.1742 1.4430 1.1571 23 8 3.5668 1.4528 2.2067 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.5525 1.2686 -2.0982 32 1 5.0016 0.6592 -1.2588 33 1 4.2729 3.5790 -1.0186 34 1 5.0615 3.0066 -2.5042 35 1 6.7677 3.7649 -0.9988 36 1 6.8578 2.0007 -1.1049 37 1 7.9252 3.8956 0.7960 38 1 8.1080 2.2037 1.3175 39 1 3.9293 4.2216 0.9432 40 1 6.4175 2.5462 4.6683 41 1 7.2069 1.3601 3.4970 42 1 9.2769 2.8242 3.4087 43 1 8.4883 4.0107 4.5799 44 1 6.0501 0.6572 0.4851 45 1 6.0493 1.2358 2.1715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602814740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:42 Heat of formation + Delta-G solvation = 34.234980 kcal Electronic energy + Delta-G solvation = -24513.201152 eV Core-core repulsion = 21340.163056 eV Total energy + Delta-G solvation = -3173.038096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.60850 -37.32240 -35.74761 -35.02918 -32.97667 -31.92046 -30.74131 -28.10088 -26.38582 -25.05226 -24.91108 -23.01142 -21.55237 -21.00834 -20.16419 -18.91412 -18.20208 -16.62312 -16.05012 -15.79326 -14.77841 -14.59960 -14.45905 -14.07755 -13.84428 -13.57821 -13.44134 -13.07193 -12.84705 -12.56980 -12.25841 -11.87976 -11.78440 -11.69083 -11.53167 -11.15007 -11.05868 -10.96253 -10.73166 -10.60413 -10.53244 -10.40443 -10.37485 -10.13095 -9.99592 -9.35767 -8.80943 -8.77238 -8.43436 -7.96967 -7.82491 -6.64852 -5.92291 -3.51407 3.44253 3.54459 3.62239 3.65239 3.81101 4.73670 4.80778 5.10339 5.16210 5.17887 5.20470 5.34845 5.44927 5.48395 5.57121 5.71293 5.78812 5.83876 5.88675 5.92407 5.94625 5.98147 6.10613 6.15932 6.18906 6.27010 6.32156 6.39305 6.43923 6.51697 6.53703 6.63138 6.76092 6.81333 6.92109 7.15858 7.24693 7.38193 7.59604 8.03054 8.10226 8.17896 8.31076 8.74886 9.23357 9.35889 9.88201 11.08911 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.007270 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.691347 B = 3850.587751 C = 4196.953061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.619 5.619 5 C 0.120 3.880 6 C -0.136 4.136 7 C 0.057 3.943 8 N -0.462 5.462 9 C 0.109 3.891 10 C 0.072 3.928 11 C -0.542 4.542 12 H 0.052 0.948 13 C 0.116 3.884 14 N -0.715 5.715 15 Si 0.816 3.184 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.291 1.291 19 C -0.211 4.211 20 C -0.216 4.216 21 C 0.060 3.940 22 C 0.563 3.437 23 O -0.528 6.528 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.008 0.992 37 H 0.062 0.938 38 H 0.002 0.998 39 H 0.249 0.751 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.024 0.976 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -7.944 -9.978 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.002 4.002 4 N -0.354 5.354 5 C -0.004 4.004 6 C -0.175 4.175 7 C -0.071 4.071 8 N -0.186 5.186 9 C -0.018 4.018 10 C 0.071 3.929 11 C -0.575 4.575 12 H 0.071 0.929 13 C -0.099 4.099 14 N -0.341 5.341 15 Si 0.641 3.359 16 H -0.215 1.215 17 H -0.202 1.202 18 H -0.217 1.217 19 C -0.249 4.249 20 C -0.255 4.255 21 C -0.071 4.071 22 C 0.351 3.649 23 O -0.402 6.402 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.042 0.958 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.045 -7.698 -9.308 12.456 hybrid contribution 0.576 0.514 -0.896 1.182 sum -2.469 -7.184 -10.204 12.721 Atomic orbital electron populations 1.21682 0.95751 1.01293 1.01781 1.21900 0.95587 0.98247 1.01910 1.21301 0.80638 0.95664 1.02578 1.47831 1.05449 1.75939 1.06225 1.21629 0.95542 0.97150 0.86069 1.21846 0.98107 0.98368 0.99193 1.21655 0.95689 0.99707 0.90066 1.61461 1.27714 1.26072 1.03311 1.21730 0.87564 0.96401 0.96067 1.18795 0.94072 0.94392 0.85641 1.19747 1.16588 1.07568 1.13584 0.92948 1.24385 0.93774 0.94402 0.97318 1.70588 1.10599 1.32411 1.20502 0.87874 0.78015 0.91879 0.78128 1.21498 1.20209 1.21734 1.23071 0.99866 0.94720 1.07267 1.22916 0.92043 1.04501 1.06010 1.22298 0.92544 0.89945 1.02317 1.20010 0.89554 0.73056 0.82302 1.90593 1.69840 1.48431 1.31305 0.93012 0.92470 0.92993 0.92634 0.91715 0.89897 0.91928 0.90947 0.91980 0.89913 0.91757 0.91761 0.97372 0.91910 0.97977 0.93995 0.90478 0.92597 0.92049 0.90781 0.95847 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.14 -1.80 6.26 -26.73 -0.17 -1.96 16 3 C 0.12 1.86 5.36 -4.04 -0.02 1.84 16 4 N -0.62 -10.54 2.48 -173.05 -0.43 -10.97 16 5 C 0.12 1.64 5.93 -3.58 -0.02 1.62 16 6 C -0.14 -2.05 5.86 -27.35 -0.16 -2.21 16 7 C 0.06 0.98 4.93 -5.11 -0.03 0.96 16 8 N -0.46 -9.52 0.82 -237.46 -0.19 -9.72 16 9 C 0.11 2.35 4.61 -3.82 -0.02 2.33 16 10 C 0.07 1.76 1.99 -155.66 -0.31 1.45 16 11 C -0.54 -14.91 8.83 -34.44 -0.30 -15.22 16 12 H 0.05 1.52 8.06 -52.49 -0.42 1.10 16 13 C 0.12 3.09 4.48 -17.82 -0.08 3.01 16 14 N -0.72 -18.60 7.66 55.43 0.42 -18.18 16 15 Si 0.82 20.17 29.69 -169.99 -5.05 15.12 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 C -0.21 -4.96 8.68 -26.69 -0.23 -5.19 16 20 C -0.22 -4.78 9.94 -26.70 -0.27 -5.04 16 21 C 0.06 1.22 4.90 -4.64 -0.02 1.19 16 22 C 0.56 11.85 5.18 -11.16 -0.06 11.79 16 23 O -0.53 -13.33 16.23 5.56 0.09 -13.24 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.52 7.40 -51.93 -0.38 1.13 16 30 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 31 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 32 H 0.06 0.81 6.76 -51.92 -0.35 0.46 16 33 H 0.08 1.50 6.89 -51.93 -0.36 1.14 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.12 7.65 -51.92 -0.40 0.72 16 36 H 0.01 0.13 7.77 -51.93 -0.40 -0.28 16 37 H 0.06 1.33 7.60 -51.93 -0.39 0.94 16 38 H 0.00 0.04 7.96 -51.93 -0.41 -0.37 16 39 H 0.25 6.34 7.16 -40.82 -0.29 6.05 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.06 1.22 6.68 -51.93 -0.35 0.88 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.02 0.42 6.66 -51.92 -0.35 0.07 16 45 H 0.11 2.37 4.53 -51.93 -0.24 2.13 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -29.75 339.40 -9.13 -38.88 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.77 Total: -0.34 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.32 Total: -6.68 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.20 Total: -38.86 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.05 Total: 15.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.75 -9.13 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602814740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.116 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds