Wall clock time and date at job start Tue Mar 31 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47227 * 2 1 4 4 N 1.46503 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.47254 * 120.07283 * 90.00273 * 4 3 2 6 6 C 1.53104 * 108.40007 * 109.99612 * 5 4 3 7 7 C 1.51681 * 110.75859 * 85.59272 * 6 5 4 8 8 N 1.45757 * 113.93549 * 293.22038 * 7 6 5 9 9 C 1.46902 * 110.99930 * 192.72447 * 8 7 6 10 10 C 1.53002 * 109.46991 * 158.28519 * 9 8 7 11 11 C 1.50695 * 115.55176 * 298.36013 * 10 9 8 12 12 H 1.08000 * 120.00120 * 211.63627 * 11 10 9 13 13 C 1.37873 * 119.99816 * 31.62956 * 11 10 9 14 14 N 1.31518 * 120.00217 * 43.06505 * 13 11 10 15 15 Si 1.86805 * 120.00077 * 223.05471 * 13 11 10 16 16 H 1.48498 * 109.47323 * 270.00479 * 15 13 11 17 17 H 1.48504 * 109.46975 * 30.00598 * 15 13 11 18 18 H 1.48497 * 109.47027 * 150.00301 * 15 13 11 19 19 C 1.52999 * 117.49449 * 84.03228 * 10 9 8 20 20 C 1.52997 * 117.49621 * 152.68958 * 10 9 8 21 21 C 1.46876 * 112.43432 * 67.71582 * 8 7 6 22 22 C 1.33608 * 120.07857 * 269.98084 * 4 3 2 23 23 O 1.21278 * 119.88391 * 359.49296 * 22 4 3 24 24 H 1.08997 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47106 * 300.00117 * 1 2 3 26 26 H 1.09006 * 109.46630 * 59.99770 * 1 2 3 27 27 H 1.09005 * 109.47178 * 239.99797 * 2 1 3 28 28 H 1.08997 * 109.46832 * 120.00017 * 2 1 3 29 29 H 1.09005 * 109.47207 * 59.99815 * 3 2 1 30 30 H 1.08997 * 109.47229 * 299.99774 * 3 2 1 31 31 H 1.08999 * 109.68071 * 350.26107 * 5 4 3 32 32 H 1.09007 * 109.70630 * 229.74112 * 5 4 3 33 33 H 1.09004 * 109.22297 * 325.25531 * 6 5 4 34 34 H 1.09001 * 109.21980 * 205.91723 * 6 5 4 35 35 H 1.09010 * 108.59194 * 172.07593 * 7 6 5 36 36 H 1.08997 * 108.48147 * 54.29504 * 7 6 5 37 37 H 1.09003 * 109.46850 * 38.28660 * 9 8 7 38 38 H 1.08995 * 109.47292 * 278.29041 * 9 8 7 39 39 H 0.96999 * 119.99706 * 186.64282 * 14 13 11 40 40 H 1.09005 * 117.49447 * 214.99950 * 19 10 9 41 41 H 1.08998 * 117.50093 * 0.02562 * 19 10 9 42 42 H 1.09001 * 117.50131 * 359.97438 * 20 10 9 43 43 H 1.09002 * 117.50260 * 144.99807 * 20 10 9 44 44 H 1.09008 * 109.60472 * 33.97838 * 21 8 7 45 45 H 1.08997 * 109.60293 * 154.45825 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2435 1.4423 -1.2734 6 6 4.9157 2.8075 -1.4425 7 6 6.2597 2.8357 -0.7401 8 7 6.1702 2.7439 0.7118 9 6 7.4555 3.0765 1.3406 10 6 7.2192 3.4983 2.7922 11 6 6.3613 4.7227 2.9818 12 1 6.5346 5.3786 3.8221 13 6 5.3554 5.0056 2.0823 14 7 4.5729 4.0426 1.6465 15 14 5.1037 6.7569 1.4829 16 1 4.1548 7.4574 2.3852 17 1 6.4054 7.4717 1.4821 18 1 4.5509 6.7337 0.1048 19 6 7.1099 2.3898 3.8410 20 6 8.3589 3.2732 3.7877 21 6 5.6882 1.4315 1.1618 22 6 4.1742 1.4430 1.1571 23 8 3.5668 1.4528 2.2067 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.5525 1.2686 -2.0982 32 1 5.0016 0.6592 -1.2588 33 1 4.2729 3.5790 -1.0186 34 1 5.0615 3.0066 -2.5042 35 1 6.7677 3.7649 -0.9988 36 1 6.8578 2.0007 -1.1049 37 1 7.9252 3.8956 0.7960 38 1 8.1080 2.2037 1.3175 39 1 3.9293 4.2216 0.9432 40 1 6.4175 2.5462 4.6683 41 1 7.2069 1.3601 3.4970 42 1 9.2769 2.8242 3.4087 43 1 8.4883 4.0107 4.5799 44 1 6.0501 0.6572 0.4851 45 1 6.0493 1.2358 2.1715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602814740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:41 Heat of formation + Delta-G solvation = 18.983287 kcal Electronic energy + Delta-G solvation = -24513.862515 eV Core-core repulsion = 21340.163056 eV Total energy + Delta-G solvation = -3173.699459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07789 -38.99006 -37.31340 -36.46448 -34.19766 -33.95973 -32.09039 -29.57216 -27.90063 -26.83394 -26.22346 -24.50018 -22.94446 -22.54048 -21.50607 -20.78964 -19.61362 -18.12750 -17.75906 -17.35078 -16.46842 -16.18604 -15.73007 -15.68542 -15.39440 -15.03051 -14.99867 -14.51830 -14.09842 -13.97660 -13.72644 -13.61167 -13.19531 -12.97079 -12.81687 -12.71923 -12.70647 -12.61681 -12.32167 -12.15046 -12.01375 -11.90025 -11.82941 -11.63582 -11.51693 -11.25808 -10.65693 -10.44891 -10.26402 -9.74128 -9.32045 -8.32779 -7.92050 -5.58705 1.42537 1.51469 1.61976 2.10736 2.45351 2.71603 3.12618 3.35378 3.85174 3.93315 4.05229 4.10576 4.17360 4.22954 4.28188 4.40278 4.44769 4.53471 4.58987 4.63027 4.71305 4.75250 4.78222 4.83167 4.85168 4.87552 4.99590 5.01626 5.07265 5.13949 5.17155 5.19566 5.28955 5.32352 5.42996 5.49145 5.59223 5.70954 5.96346 6.03340 6.50584 6.67317 6.73830 6.88217 7.15045 7.77346 7.84045 9.02958 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.007270 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.691347 B = 3850.587751 C = 4196.953061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.120 3.880 4 N -0.615 5.615 5 C 0.117 3.883 6 C -0.131 4.131 7 C 0.053 3.947 8 N -0.486 5.486 9 C 0.118 3.882 10 C 0.051 3.949 11 C -0.580 4.580 12 H 0.020 0.980 13 C 0.095 3.905 14 N -0.709 5.709 15 Si 0.862 3.138 16 H -0.303 1.303 17 H -0.282 1.282 18 H -0.278 1.278 19 C -0.212 4.212 20 C -0.198 4.198 21 C 0.064 3.936 22 C 0.558 3.442 23 O -0.587 6.587 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.249 0.751 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -9.194 -13.568 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.003 4.003 4 N -0.348 5.348 5 C -0.005 4.005 6 C -0.170 4.170 7 C -0.075 4.075 8 N -0.210 5.210 9 C -0.009 4.009 10 C 0.050 3.950 11 C -0.613 4.613 12 H 0.038 0.962 13 C -0.122 4.122 14 N -0.334 5.334 15 Si 0.688 3.312 16 H -0.231 1.231 17 H -0.208 1.208 18 H -0.204 1.204 19 C -0.250 4.250 20 C -0.236 4.236 21 C -0.067 4.067 22 C 0.347 3.653 23 O -0.465 6.465 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.803 -8.952 -12.963 16.001 hybrid contribution 0.452 0.911 0.227 1.042 sum -2.351 -8.042 -12.736 15.244 Atomic orbital electron populations 1.21659 0.94098 1.02349 1.02005 1.21793 0.96966 0.96322 1.01536 1.21408 0.79785 0.97171 1.01954 1.47893 1.06291 1.74074 1.06508 1.21931 0.96521 0.96851 0.85229 1.21834 0.96285 0.98035 1.00848 1.21760 0.97447 1.00478 0.87813 1.61101 1.27611 1.26604 1.05711 1.21516 0.88341 0.97050 0.94037 1.18953 0.94687 0.93450 0.87910 1.19822 1.18457 1.09192 1.13795 0.96164 1.24662 0.93666 0.96238 0.97591 1.70667 1.09898 1.32918 1.19954 0.87190 0.77070 0.89064 0.77875 1.23094 1.20812 1.20381 1.22899 1.00266 0.95653 1.06170 1.22924 0.92514 1.03386 1.04784 1.22149 0.92113 0.90823 1.01624 1.20236 0.90022 0.72431 0.82650 1.90564 1.70915 1.51343 1.33654 0.91554 0.93956 0.91077 0.90276 0.94652 0.93951 0.89021 0.87093 0.90438 0.93244 0.87994 0.92370 0.94636 0.91988 0.96004 0.93960 0.93762 0.90963 0.88877 0.91716 0.92644 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.13 -3.10 6.26 30.59 0.19 -2.91 16 3 C 0.12 3.50 5.36 86.38 0.46 3.97 16 4 N -0.61 -19.78 2.48 -820.45 -2.03 -21.82 16 5 C 0.12 2.68 5.93 86.27 0.51 3.19 16 6 C -0.13 -3.44 5.86 30.20 0.18 -3.26 16 7 C 0.05 1.64 4.93 86.09 0.42 2.06 16 8 N -0.49 -19.34 0.82 -905.18 -0.74 -20.08 16 9 C 0.12 4.90 4.61 86.30 0.40 5.30 16 10 C 0.05 2.52 1.99 -52.93 -0.11 2.41 16 11 C -0.58 -33.01 8.83 25.60 0.23 -32.78 16 12 H 0.02 1.24 8.06 -2.91 -0.02 1.22 16 13 C 0.09 5.13 4.48 84.65 0.38 5.51 16 14 N -0.71 -37.42 7.66 21.45 0.16 -37.25 16 15 Si 0.86 42.26 29.69 68.60 2.04 44.29 16 16 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 17 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 C -0.21 -10.16 8.68 30.62 0.27 -9.89 16 20 C -0.20 -8.70 9.94 30.62 0.30 -8.39 16 21 C 0.06 2.52 4.90 85.78 0.42 2.94 16 22 C 0.56 23.41 5.18 88.06 0.46 23.86 16 23 O -0.59 -30.77 16.23 -3.02 -0.05 -30.82 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 1.59 7.40 -2.38 -0.02 1.57 16 30 H 0.09 2.13 8.03 -2.39 -0.02 2.11 16 31 H 0.11 1.76 7.92 -2.39 -0.02 1.74 16 32 H 0.08 1.61 6.76 -2.38 -0.02 1.59 16 33 H 0.05 1.66 6.89 -2.38 -0.02 1.65 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.86 7.65 -2.38 -0.02 1.84 16 36 H 0.04 0.92 7.77 -2.39 -0.02 0.91 16 37 H 0.06 2.55 7.60 -2.39 -0.02 2.53 16 38 H 0.02 0.82 7.96 -2.39 -0.02 0.80 16 39 H 0.25 12.79 7.16 -92.71 -0.66 12.12 16 40 H 0.04 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.07 3.18 6.68 -2.39 -0.02 3.16 16 42 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.06 1.79 6.66 -2.38 -0.02 1.77 16 45 H 0.08 3.50 4.53 -2.39 -0.01 3.49 16 Total: -1.00 -68.55 339.40 5.26 -63.29 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.05 Total: 12.51 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.82 Total: -10.13 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.61 Total: -79.15 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.04 Total: 44.29 kcal Total: -68.55 5.26 -63.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602814740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.273 kcal (2) G-P(sol) polarization free energy of solvation -68.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds