Wall clock time and date at job start Tue Mar 31 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47185 * 2 1 4 4 N 1.46899 * 109.46879 * 119.99875 * 2 1 3 5 5 C 1.46899 * 111.00013 * 73.53182 * 4 2 1 6 6 C 1.50704 * 109.46921 * 66.04493 * 5 4 2 7 7 H 1.07997 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99993 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47348 * 89.99565 * 10 8 6 12 12 H 1.48504 * 109.46873 * 209.99952 * 10 8 6 13 13 H 1.48500 * 109.46757 * 329.99212 * 10 8 6 14 14 C 1.46900 * 111.00399 * 309.57373 * 4 2 1 15 15 N 1.46495 * 109.47639 * 208.34535 * 14 4 2 16 16 C 1.46761 * 124.34901 * 259.80096 * 15 14 4 17 17 C 1.54483 * 105.53516 * 163.21434 * 16 15 14 18 18 H 1.08998 * 110.96819 * 267.08968 * 17 16 15 19 19 C 1.52991 * 110.97362 * 143.32176 * 17 16 15 20 20 C 1.53000 * 117.49820 * 134.91101 * 19 17 16 21 21 C 1.53004 * 117.49697 * 66.25431 * 19 17 16 22 22 C 1.54633 * 101.76271 * 25.19979 * 17 16 15 23 23 C 1.34419 * 124.34963 * 79.62425 * 15 14 4 24 24 O 1.21285 * 124.93763 * 0.42565 * 23 15 14 25 25 H 1.09001 * 109.46983 * 305.56847 * 1 2 3 26 26 H 1.09000 * 109.47453 * 65.56986 * 1 2 3 27 27 H 1.08996 * 109.47160 * 185.56993 * 1 2 3 28 28 H 1.08994 * 109.47006 * 239.99725 * 2 1 3 29 29 H 1.09007 * 109.47478 * 174.09954 * 3 2 1 30 30 H 1.08997 * 109.47411 * 294.10104 * 3 2 1 31 31 H 1.09009 * 109.47350 * 54.10207 * 3 2 1 32 32 H 1.09005 * 109.47195 * 186.04023 * 5 4 2 33 33 H 1.08997 * 109.47265 * 306.04424 * 5 4 2 34 34 H 0.96993 * 119.99679 * 179.97438 * 9 8 6 35 35 H 1.09009 * 109.46878 * 88.34842 * 14 4 2 36 36 H 1.08998 * 109.47042 * 328.34989 * 14 4 2 37 37 H 1.08997 * 110.39409 * 44.09985 * 16 15 14 38 38 H 1.09005 * 110.11366 * 282.17358 * 16 15 14 39 39 H 1.09000 * 115.55550 * 280.58611 * 19 17 16 40 40 H 1.08996 * 117.50225 * 0.02562 * 20 19 17 41 41 H 1.09005 * 117.49993 * 145.02314 * 20 19 17 42 42 H 1.09001 * 117.49847 * 214.98097 * 21 19 17 43 43 H 1.08996 * 117.49703 * 359.97438 * 21 19 17 44 44 H 1.09001 * 110.48747 * 216.52660 * 22 17 16 45 45 H 1.09006 * 110.48103 * 93.88862 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8285 -2.1444 1.0840 6 6 2.7024 -2.6797 -0.0210 7 1 3.3367 -2.0086 -0.5810 8 6 2.6923 -4.0264 -0.3168 9 7 1.9203 -4.8438 0.3656 10 14 3.7760 -4.6901 -1.6859 11 1 5.0972 -5.0759 -1.1285 12 1 3.1297 -5.8797 -2.2962 13 1 3.9625 -3.6423 -2.7215 14 6 1.3714 -0.1708 2.4101 15 7 2.2723 -0.3308 3.5541 16 6 2.1698 -1.4092 4.5444 17 6 3.5307 -1.4306 5.2751 18 1 4.2147 -2.1372 4.8051 19 6 3.3500 -1.7518 6.7599 20 6 4.3022 -2.7749 7.3824 21 6 2.8403 -3.1479 7.1238 22 6 4.0169 0.0241 5.0787 23 6 3.3011 0.4891 3.8299 24 8 3.6077 1.4631 3.1754 25 1 -0.3633 0.5978 0.8359 26 1 -0.3634 0.4250 -0.9356 27 1 -0.3633 -1.0228 0.0997 28 1 1.8933 -0.5138 -0.8899 29 1 3.1249 1.4443 0.1056 30 1 1.7655 1.9249 -0.9380 31 1 1.5930 1.9860 0.8325 32 1 2.0994 -2.6226 2.0254 33 1 0.7839 -2.3564 0.8561 34 1 1.9129 -5.7910 0.1572 35 1 0.4489 -0.7215 2.5943 36 1 1.1424 0.8860 2.2729 37 1 1.9924 -2.3639 4.0493 38 1 1.3665 -1.1954 5.2495 39 1 3.0269 -0.9195 7.3852 40 1 5.0577 -3.2188 6.7342 41 1 4.6054 -2.6157 8.4173 42 1 2.1824 -3.2339 7.9885 43 1 2.6335 -3.8372 6.3052 44 1 5.0966 0.0488 4.9313 45 1 3.7333 0.6395 5.9326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762485315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:29 Heat of formation + Delta-G solvation = -5.553012 kcal Electronic energy + Delta-G solvation = -23219.984274 eV Core-core repulsion = 20045.220841 eV Total energy + Delta-G solvation = -3174.763433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15843 -37.78107 -37.27209 -35.26934 -32.81323 -31.95369 -30.14944 -27.33001 -27.00832 -26.55014 -24.47624 -22.74850 -22.36967 -22.06793 -20.20956 -19.53442 -18.41143 -16.65248 -16.27733 -15.89091 -15.58215 -15.15447 -14.58944 -14.47149 -14.03648 -13.79123 -13.46571 -13.16890 -12.95046 -12.78080 -12.59799 -12.22640 -11.97986 -11.71852 -11.62787 -11.56196 -11.42712 -11.32989 -10.97997 -10.79834 -10.70105 -10.62429 -10.52513 -10.38384 -10.00841 -9.97708 -9.74995 -9.35029 -9.17976 -8.48593 -8.24084 -7.23988 -6.05051 -4.05065 3.04904 3.30783 3.36887 3.41329 3.48877 3.72291 4.41727 4.45375 4.60505 4.72406 4.87467 5.02213 5.10880 5.25516 5.30872 5.39676 5.42814 5.53593 5.59923 5.65483 5.69214 5.77626 5.83888 5.88441 5.89840 5.97594 6.01756 6.07731 6.09682 6.16738 6.29623 6.33163 6.38602 6.56279 6.84571 6.90208 6.99192 7.30538 7.36234 7.62685 7.81563 8.08138 8.23477 8.53345 8.71036 9.02711 9.58999 11.05477 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.006276 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.030547 B = 4460.038193 C = 5898.628895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 C -0.137 4.137 4 N -0.541 5.541 5 C 0.194 3.806 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.291 3.709 15 N -0.602 5.602 16 C 0.109 3.891 17 C -0.069 4.069 18 H 0.093 0.907 19 C -0.141 4.141 20 C -0.178 4.178 21 C -0.178 4.178 22 C -0.146 4.146 23 C 0.523 3.477 24 O -0.534 6.534 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.028 0.972 33 H -0.005 1.005 34 H 0.260 0.740 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 6.052 12.097 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.021 4.021 3 C -0.194 4.194 4 N -0.267 5.267 5 C 0.069 3.931 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.079 3.921 15 N -0.336 5.336 16 C -0.015 4.015 17 C -0.088 4.088 18 H 0.111 0.889 19 C -0.160 4.160 20 C -0.215 4.215 21 C -0.215 4.215 22 C -0.187 4.187 23 C 0.310 3.690 24 O -0.410 6.410 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.347 6.475 11.723 13.397 hybrid contribution -0.321 -0.922 -0.738 1.224 sum -0.668 5.553 10.986 12.327 Atomic orbital electron populations 1.22496 0.98700 1.01959 1.00874 1.21539 0.91532 0.94240 0.94839 1.21824 1.02194 0.95644 0.99775 1.61965 1.56996 1.07549 1.00162 1.19786 0.95307 0.80485 0.97535 1.21161 1.23781 0.92558 1.16688 0.91974 1.24953 0.95818 0.96944 0.96755 1.69947 1.39199 1.03860 1.40918 0.86539 0.80531 0.78411 0.82196 1.20729 1.21357 1.19852 1.21693 0.88064 0.99530 0.82787 1.48409 1.31471 1.27963 1.25786 1.22102 0.96921 0.92007 0.90453 1.21702 0.97041 0.96714 0.93329 0.88884 1.22211 1.05198 0.93425 0.95160 1.23011 0.93485 1.03449 1.01583 1.22982 0.96882 0.98150 1.03525 1.22378 1.02106 0.96518 0.97672 1.20691 0.80149 0.82589 0.85598 1.90670 1.67555 1.27821 1.54957 0.93709 0.92944 0.91996 0.88723 0.91931 0.93519 0.93654 0.95417 0.98760 0.93025 0.93275 0.90293 0.89850 0.91517 0.87605 0.88578 0.88981 0.88872 0.88242 0.88476 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.52 37.16 0.32 -2.79 16 2 C 0.09 1.72 2.74 -67.71 -0.19 1.54 16 3 C -0.14 -2.42 9.13 37.16 0.34 -2.08 16 4 N -0.54 -11.67 4.52 -231.97 -1.05 -12.72 16 5 C 0.19 4.85 4.46 -4.97 -0.02 4.83 16 6 C -0.50 -13.93 8.32 -34.44 -0.29 -14.21 16 7 H 0.06 1.75 7.22 -52.49 -0.38 1.37 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.29 5.38 4.17 -63.32 -0.26 5.12 16 15 N -0.60 -10.41 3.17 -175.91 -0.56 -10.97 16 16 C 0.11 1.55 6.68 -3.12 -0.02 1.53 16 17 C -0.07 -0.85 3.29 -88.99 -0.29 -1.14 16 18 H 0.09 1.27 8.00 -51.93 -0.42 0.85 16 19 C -0.14 -1.38 5.05 -90.62 -0.46 -1.84 16 20 C -0.18 -1.64 10.20 -26.69 -0.27 -1.91 16 21 C -0.18 -1.71 10.10 -26.69 -0.27 -1.98 16 22 C -0.15 -1.91 6.42 -26.74 -0.17 -2.08 16 23 C 0.52 9.32 8.02 -10.87 -0.09 9.23 16 24 O -0.53 -11.41 17.73 5.55 0.10 -11.31 16 25 H 0.04 0.69 6.87 -51.93 -0.36 0.33 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.17 6.56 -51.93 -0.34 0.83 16 28 H 0.09 2.07 6.60 -51.93 -0.34 1.73 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.78 6.61 -51.92 -0.34 0.44 16 32 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 33 H -0.01 -0.14 6.50 -51.93 -0.34 -0.48 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.05 0.88 7.74 -51.92 -0.40 0.47 16 36 H 0.08 1.43 5.56 -51.93 -0.29 1.14 16 37 H 0.08 1.36 6.83 -51.93 -0.35 1.01 16 38 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 39 H 0.11 0.92 7.89 -51.93 -0.41 0.51 16 40 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.10 1.05 7.72 -51.93 -0.40 0.65 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -31.18 354.20 -9.87 -41.05 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.64 Total: 1.57 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.77 Total: -4.31 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.87 Total: -48.92 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.10 Total: -11.31 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.18 -9.87 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762485315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.493 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds