Wall clock time and date at job start Tue Mar 31 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47185 * 2 1 4 4 N 1.46899 * 109.46879 * 119.99875 * 2 1 3 5 5 C 1.46899 * 111.00013 * 73.53182 * 4 2 1 6 6 C 1.50704 * 109.46921 * 66.04493 * 5 4 2 7 7 H 1.07997 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99993 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47348 * 89.99565 * 10 8 6 12 12 H 1.48504 * 109.46873 * 209.99952 * 10 8 6 13 13 H 1.48500 * 109.46757 * 329.99212 * 10 8 6 14 14 C 1.46900 * 111.00399 * 309.57373 * 4 2 1 15 15 N 1.46495 * 109.47639 * 208.34535 * 14 4 2 16 16 C 1.46761 * 124.34901 * 259.80096 * 15 14 4 17 17 C 1.54483 * 105.53516 * 163.21434 * 16 15 14 18 18 H 1.08998 * 110.96819 * 267.08968 * 17 16 15 19 19 C 1.52991 * 110.97362 * 143.32176 * 17 16 15 20 20 C 1.53000 * 117.49820 * 134.91101 * 19 17 16 21 21 C 1.53004 * 117.49697 * 66.25431 * 19 17 16 22 22 C 1.54633 * 101.76271 * 25.19979 * 17 16 15 23 23 C 1.34419 * 124.34963 * 79.62425 * 15 14 4 24 24 O 1.21285 * 124.93763 * 0.42565 * 23 15 14 25 25 H 1.09001 * 109.46983 * 305.56847 * 1 2 3 26 26 H 1.09000 * 109.47453 * 65.56986 * 1 2 3 27 27 H 1.08996 * 109.47160 * 185.56993 * 1 2 3 28 28 H 1.08994 * 109.47006 * 239.99725 * 2 1 3 29 29 H 1.09007 * 109.47478 * 174.09954 * 3 2 1 30 30 H 1.08997 * 109.47411 * 294.10104 * 3 2 1 31 31 H 1.09009 * 109.47350 * 54.10207 * 3 2 1 32 32 H 1.09005 * 109.47195 * 186.04023 * 5 4 2 33 33 H 1.08997 * 109.47265 * 306.04424 * 5 4 2 34 34 H 0.96993 * 119.99679 * 179.97438 * 9 8 6 35 35 H 1.09009 * 109.46878 * 88.34842 * 14 4 2 36 36 H 1.08998 * 109.47042 * 328.34989 * 14 4 2 37 37 H 1.08997 * 110.39409 * 44.09985 * 16 15 14 38 38 H 1.09005 * 110.11366 * 282.17358 * 16 15 14 39 39 H 1.09000 * 115.55550 * 280.58611 * 19 17 16 40 40 H 1.08996 * 117.50225 * 0.02562 * 20 19 17 41 41 H 1.09005 * 117.49993 * 145.02314 * 20 19 17 42 42 H 1.09001 * 117.49847 * 214.98097 * 21 19 17 43 43 H 1.08996 * 117.49703 * 359.97438 * 21 19 17 44 44 H 1.09001 * 110.48747 * 216.52660 * 22 17 16 45 45 H 1.09006 * 110.48103 * 93.88862 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8285 -2.1444 1.0840 6 6 2.7024 -2.6797 -0.0210 7 1 3.3367 -2.0086 -0.5810 8 6 2.6923 -4.0264 -0.3168 9 7 1.9203 -4.8438 0.3656 10 14 3.7760 -4.6901 -1.6859 11 1 5.0972 -5.0759 -1.1285 12 1 3.1297 -5.8797 -2.2962 13 1 3.9625 -3.6423 -2.7215 14 6 1.3714 -0.1708 2.4101 15 7 2.2723 -0.3308 3.5541 16 6 2.1698 -1.4092 4.5444 17 6 3.5307 -1.4306 5.2751 18 1 4.2147 -2.1372 4.8051 19 6 3.3500 -1.7518 6.7599 20 6 4.3022 -2.7749 7.3824 21 6 2.8403 -3.1479 7.1238 22 6 4.0169 0.0241 5.0787 23 6 3.3011 0.4891 3.8299 24 8 3.6077 1.4631 3.1754 25 1 -0.3633 0.5978 0.8359 26 1 -0.3634 0.4250 -0.9356 27 1 -0.3633 -1.0228 0.0997 28 1 1.8933 -0.5138 -0.8899 29 1 3.1249 1.4443 0.1056 30 1 1.7655 1.9249 -0.9380 31 1 1.5930 1.9860 0.8325 32 1 2.0994 -2.6226 2.0254 33 1 0.7839 -2.3564 0.8561 34 1 1.9129 -5.7910 0.1572 35 1 0.4489 -0.7215 2.5943 36 1 1.1424 0.8860 2.2729 37 1 1.9924 -2.3639 4.0493 38 1 1.3665 -1.1954 5.2495 39 1 3.0269 -0.9195 7.3852 40 1 5.0577 -3.2188 6.7342 41 1 4.6054 -2.6157 8.4173 42 1 2.1824 -3.2339 7.9885 43 1 2.6335 -3.8372 6.3052 44 1 5.0966 0.0488 4.9313 45 1 3.7333 0.6395 5.9326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762485315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:29 Heat of formation + Delta-G solvation = -24.552450 kcal Electronic energy + Delta-G solvation = -23220.808152 eV Core-core repulsion = 20045.220841 eV Total energy + Delta-G solvation = -3175.587311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46199 -39.21766 -38.49333 -36.53389 -34.91997 -33.26052 -31.81286 -28.92010 -28.42628 -28.01348 -26.11856 -24.05518 -23.79309 -23.08507 -21.33630 -20.83234 -19.92685 -18.38339 -18.00348 -17.17187 -16.88240 -16.60888 -16.10371 -16.00059 -15.43399 -15.18443 -14.91947 -14.66006 -14.29149 -14.19321 -14.05792 -13.81275 -13.40679 -13.24491 -12.86323 -12.82448 -12.74465 -12.61567 -12.58384 -12.40310 -12.28895 -12.14847 -11.85490 -11.78579 -11.49554 -11.32906 -11.18645 -10.86633 -10.61478 -10.57998 -9.71027 -8.97728 -8.20912 -6.28827 1.37586 1.38137 1.49152 1.66059 2.18604 2.38419 2.89124 3.11190 3.32604 3.46501 3.58698 3.75517 4.00463 4.04437 4.18152 4.24987 4.26304 4.30877 4.34401 4.47625 4.49342 4.52846 4.64594 4.70424 4.75862 4.82206 4.89688 4.93113 4.94286 5.02434 5.13427 5.16772 5.21679 5.23081 5.36507 5.39093 5.42396 5.49366 5.57957 5.69783 6.07092 6.23235 6.47366 6.64478 6.86538 7.30289 7.39757 8.88887 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.006276 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.030547 B = 4460.038193 C = 5898.628895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 C -0.122 4.122 4 N -0.555 5.555 5 C 0.215 3.785 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.959 3.041 11 H -0.277 1.277 12 H -0.279 1.279 13 H -0.270 1.270 14 C 0.291 3.709 15 N -0.608 5.608 16 C 0.108 3.892 17 C -0.059 4.059 18 H 0.073 0.927 19 C -0.137 4.137 20 C -0.173 4.173 21 C -0.183 4.183 22 C -0.133 4.133 23 C 0.509 3.491 24 O -0.576 6.576 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.006 0.994 33 H -0.026 1.026 34 H 0.264 0.736 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 6.783 13.345 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 C -0.179 4.179 4 N -0.281 5.281 5 C 0.090 3.910 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.784 3.216 11 H -0.202 1.202 12 H -0.204 1.204 13 H -0.194 1.194 14 C 0.080 3.920 15 N -0.342 5.342 16 C -0.014 4.014 17 C -0.078 4.078 18 H 0.091 0.909 19 C -0.156 4.156 20 C -0.210 4.210 21 C -0.220 4.220 22 C -0.172 4.172 23 C 0.298 3.702 24 O -0.456 6.456 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.024 0.976 33 H -0.008 1.008 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.296 7.197 12.992 14.855 hybrid contribution -0.362 -1.152 -1.133 1.656 sum -0.658 6.045 11.858 13.327 Atomic orbital electron populations 1.22351 0.96498 1.01021 1.02957 1.21574 0.93357 0.94803 0.92922 1.21683 1.00379 0.94332 1.01548 1.61921 1.58346 1.05676 1.02135 1.19363 0.93407 0.82744 0.95533 1.21397 1.24121 0.92915 1.17449 0.93133 1.25729 0.97022 0.97145 0.98976 1.70047 1.40317 1.04187 1.42202 0.85545 0.78788 0.77889 0.79383 1.20245 1.20439 1.19413 1.21682 0.88459 0.99716 0.82143 1.48579 1.31274 1.28622 1.25710 1.22236 0.99227 0.89839 0.90127 1.21612 0.95181 0.95999 0.95050 0.90879 1.22165 1.05869 0.94266 0.93269 1.23082 0.92951 1.02555 1.02442 1.23012 0.97773 0.97601 1.03609 1.22374 1.01796 0.96847 0.96211 1.21543 0.80060 0.81916 0.86666 1.90637 1.68605 1.29633 1.56694 0.91759 0.90667 0.94372 0.91620 0.94432 0.90702 0.92985 0.97576 1.00824 0.92751 0.92705 0.89522 0.92673 0.88659 0.85253 0.89555 0.86911 0.87081 0.90149 0.87874 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.71 8.52 71.98 0.61 -5.10 16 2 C 0.08 3.27 2.74 44.91 0.12 3.40 16 3 C -0.12 -4.24 9.13 71.98 0.66 -3.58 16 4 N -0.55 -24.65 4.52 -887.82 -4.01 -28.66 16 5 C 0.22 11.26 4.46 85.56 0.38 11.64 16 6 C -0.52 -29.76 8.32 25.60 0.21 -29.55 16 7 H 0.05 2.95 7.22 -2.91 -0.02 2.93 16 8 C 0.01 0.55 5.46 84.65 0.46 1.02 16 9 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 10 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 14 C 0.29 10.89 4.17 170.81 0.71 11.60 16 15 N -0.61 -21.09 3.17 -829.05 -2.63 -23.72 16 16 C 0.11 3.07 6.68 86.83 0.58 3.65 16 17 C -0.06 -1.41 3.29 -9.74 -0.03 -1.44 16 18 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 19 C -0.14 -2.33 5.05 -10.80 -0.05 -2.38 16 20 C -0.17 -2.79 10.20 30.62 0.31 -2.48 16 21 C -0.18 -3.18 10.10 30.62 0.31 -2.87 16 22 C -0.13 -3.22 6.42 30.59 0.20 -3.02 16 23 C 0.51 17.95 8.02 87.89 0.71 18.65 16 24 O -0.58 -24.73 17.73 -3.05 -0.05 -24.78 16 25 H 0.06 1.90 6.87 -2.39 -0.02 1.88 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.04 1.46 6.56 -2.39 -0.02 1.44 16 28 H 0.07 2.98 6.60 -2.39 -0.02 2.96 16 29 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.73 6.61 -2.38 -0.02 1.71 16 32 H 0.01 0.35 6.67 -2.38 -0.02 0.33 16 33 H -0.03 -1.43 6.50 -2.39 -0.02 -1.45 16 34 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.06 1.98 7.74 -2.38 -0.02 1.96 16 36 H 0.09 3.09 5.56 -2.39 -0.01 3.08 16 37 H 0.05 1.89 6.83 -2.39 -0.02 1.87 16 38 H 0.10 2.16 7.89 -2.38 -0.02 2.14 16 39 H 0.13 1.67 7.89 -2.39 -0.02 1.65 16 40 H 0.09 1.56 8.10 -2.39 -0.02 1.55 16 41 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.13 2.35 7.72 -2.38 -0.02 2.33 16 Total: -1.00 -69.34 354.20 1.75 -67.59 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.96 Total: 17.49 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.18 Total: -0.46 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -6.36 Total: -106.72 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.34 1.75 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762485315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.042 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds