Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99995 * 2 1 4 4 N 1.46503 * 109.47506 * 124.35303 * 3 2 1 5 5 C 1.46494 * 120.00121 * 90.99632 * 4 3 2 6 6 C 1.50706 * 109.47019 * 90.00120 * 5 4 3 7 7 H 1.07996 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99668 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00428 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99696 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46982 * 60.00373 * 10 8 6 12 12 H 1.48497 * 109.47257 * 300.00009 * 10 8 6 13 13 H 1.48505 * 109.46749 * 180.02562 * 10 8 6 14 14 C 1.34778 * 119.99870 * 270.99749 * 4 3 2 15 15 O 1.21283 * 120.00080 * 4.76437 * 14 4 3 16 16 C 1.50701 * 119.99988 * 184.76118 * 14 4 3 17 17 H 1.08997 * 110.32933 * 325.14269 * 16 14 4 18 18 C 1.54907 * 110.36947 * 87.39776 * 16 14 4 19 19 C 1.55268 * 101.59510 * 155.81867 * 18 16 14 20 20 C 1.54313 * 103.08287 * 324.48205 * 19 18 16 21 21 N 1.47444 * 107.23700 * 22.21118 * 20 19 18 22 22 C 1.46902 * 111.00551 * 123.25153 * 21 20 19 23 23 C 1.53001 * 109.46715 * 59.15724 * 22 21 20 24 24 C 1.52992 * 109.47207 * 179.15770 * 22 21 20 25 25 H 1.08002 * 119.99967 * 174.62637 * 1 2 3 26 26 H 1.08001 * 120.00046 * 354.63688 * 1 2 3 27 27 H 1.07997 * 120.00013 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47516 * 4.34827 * 3 2 1 29 29 H 1.09006 * 109.47336 * 244.35475 * 3 2 1 30 30 H 1.09002 * 109.47189 * 330.00509 * 5 4 3 31 31 H 1.08994 * 109.47345 * 210.00322 * 5 4 3 32 32 H 0.97005 * 119.99944 * 359.97438 * 9 8 6 33 33 H 1.09001 * 110.98718 * 273.98948 * 18 16 14 34 34 H 1.08990 * 110.99448 * 37.80830 * 18 16 14 35 35 H 1.08999 * 110.73927 * 206.05011 * 19 18 16 36 36 H 1.08993 * 110.75824 * 82.93151 * 19 18 16 37 37 H 1.08997 * 109.89288 * 262.80160 * 20 19 18 38 38 H 1.08998 * 110.02074 * 141.68780 * 20 19 18 39 39 H 1.09001 * 109.46972 * 299.16360 * 22 21 20 40 40 H 1.08997 * 109.47040 * 60.00115 * 23 22 21 41 41 H 1.08993 * 109.46868 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47354 * 300.00271 * 23 22 21 43 43 H 1.09004 * 109.47135 * 60.00401 * 24 22 21 44 44 H 1.09010 * 109.47147 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.47636 * 300.00183 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9827 1.3384 1.1403 5 6 4.3560 0.8515 0.9886 6 6 5.2475 1.9883 0.5595 7 1 4.8326 2.9748 0.4148 8 6 6.5929 1.7690 0.3528 9 7 7.0982 0.5678 0.5295 10 14 7.6981 3.1783 -0.1784 11 1 7.6629 4.2494 0.8496 12 1 7.2196 3.7209 -1.4752 13 1 9.0902 2.6847 -0.3323 14 6 2.5648 1.8169 2.3289 15 8 1.4053 2.1393 2.4791 16 6 3.5384 1.9514 3.4714 17 1 4.2675 1.1417 3.4449 18 6 4.2540 3.3239 3.4113 19 6 4.6675 3.5255 4.8943 20 6 3.4916 2.8993 5.6730 21 7 2.8189 1.9541 4.7630 22 6 2.7743 0.6054 5.3436 23 6 2.0238 0.6485 6.6762 24 6 2.0521 -0.3402 4.3819 25 1 -0.5400 -0.9312 -0.0876 26 1 -0.5400 0.9312 0.0874 27 1 1.8500 -0.9353 0.0004 28 1 1.3578 2.1321 0.0779 29 1 2.6304 1.3974 -0.9265 30 1 4.3815 0.0652 0.2341 31 1 4.7076 0.4533 1.9403 32 1 6.5244 -0.1640 0.8057 33 1 5.1289 3.2800 2.7627 34 1 3.5690 4.1076 3.0879 35 1 4.7631 4.5859 5.1277 36 1 5.5971 2.9993 5.1110 37 1 2.7939 3.6781 5.9807 38 1 3.8646 2.3687 6.5491 39 1 3.7904 0.2479 5.5103 40 1 1.0078 1.0061 6.5096 41 1 1.9911 -0.3521 7.1072 42 1 2.5383 1.3223 7.3614 43 1 2.5869 -0.3708 3.4325 44 1 2.0187 -1.3409 4.8129 45 1 1.0360 0.0174 4.2152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820223606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = -13.619424 kcal Electronic energy + Delta-G solvation = -23940.572915 eV Core-core repulsion = 20765.459695 eV Total energy + Delta-G solvation = -3175.113219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94303 -37.92050 -35.33366 -34.22314 -33.63677 -32.17029 -29.53403 -28.87374 -27.06826 -26.64865 -25.49682 -23.04637 -22.30230 -20.97490 -19.90383 -19.43368 -18.37446 -17.00797 -16.64126 -16.01830 -15.38927 -14.91282 -14.52023 -14.22355 -13.93337 -13.82884 -13.35987 -13.12619 -12.86386 -12.69666 -12.41873 -12.20007 -12.02020 -11.88124 -11.79122 -11.47942 -11.18973 -11.05562 -10.96645 -10.86925 -10.74540 -10.71173 -10.57591 -10.50238 -10.29906 -10.19919 -9.27693 -9.24828 -8.82434 -8.54299 -7.88089 -7.65234 -6.53386 -4.29159 2.55581 3.33586 3.35077 3.45254 3.53541 3.78006 4.37914 4.46135 4.91104 5.04171 5.14755 5.18301 5.27219 5.30099 5.33436 5.48094 5.52845 5.58494 5.66157 5.76571 5.82732 5.91394 5.98355 6.00734 6.04496 6.10022 6.13582 6.15327 6.21800 6.32285 6.39091 6.50887 6.56295 6.59615 6.69814 6.83991 6.91081 7.09417 7.21061 7.40741 7.48746 7.84581 8.14806 8.43722 8.63666 9.10712 9.41642 10.81818 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.007819 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.802053 B = 3579.967976 C = 4968.665351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C 0.147 3.853 4 N -0.595 5.595 5 C 0.228 3.772 6 C -0.612 4.612 7 H 0.057 0.943 8 C 0.024 3.976 9 N -0.905 5.905 10 Si 1.064 2.936 11 H -0.286 1.286 12 H -0.287 1.287 13 H -0.282 1.282 14 C 0.532 3.468 15 O -0.547 6.547 16 C 0.066 3.934 17 H 0.077 0.923 18 C -0.112 4.112 19 C -0.142 4.142 20 C 0.046 3.954 21 N -0.506 5.506 22 C 0.073 3.927 23 C -0.141 4.141 24 C -0.143 4.143 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.268 0.732 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 0.463 7.077 9.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C 0.024 3.976 4 N -0.326 5.326 5 C 0.108 3.892 6 C -0.650 4.650 7 H 0.075 0.925 8 C -0.181 4.181 9 N -0.540 5.540 10 Si 0.892 3.108 11 H -0.212 1.212 12 H -0.213 1.213 13 H -0.207 1.207 14 C 0.319 3.681 15 O -0.425 6.425 16 C -0.045 4.045 17 H 0.094 0.906 18 C -0.150 4.150 19 C -0.181 4.181 20 C -0.082 4.082 21 N -0.231 5.231 22 C -0.035 4.035 23 C -0.199 4.199 24 C -0.201 4.201 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.875 1.157 6.698 8.984 hybrid contribution -0.603 -0.845 0.400 1.113 sum -6.479 0.312 7.098 9.615 Atomic orbital electron populations 1.23731 0.95846 1.01407 1.01430 1.23374 0.96148 0.99231 0.99006 1.20398 0.92378 0.94729 0.90060 1.48019 1.13600 1.61827 1.09189 1.19487 0.77407 0.95563 0.96773 1.22304 0.95157 0.96454 1.51129 0.92475 1.25769 0.96504 1.01300 0.94514 1.70832 1.39331 1.00850 1.42978 0.83595 0.76181 0.74386 0.76654 1.21195 1.21299 1.20680 1.20077 0.88158 0.76611 0.83257 1.90575 1.18595 1.50521 1.82806 1.22401 0.93307 1.00009 0.88807 0.90550 1.22685 1.01330 0.94541 0.96454 1.22822 0.98134 1.01219 0.95879 1.22802 0.94806 0.95741 0.94863 1.63242 1.51310 1.06732 1.01863 1.21766 0.97677 0.89233 0.94841 1.21868 1.01291 1.01145 0.95595 1.21854 1.01855 0.97602 0.98776 0.89106 0.88540 0.87866 0.90739 0.89680 0.95851 0.95823 0.92181 0.87760 0.91199 0.90870 0.91405 0.90783 0.92770 0.94504 0.91747 0.92568 0.92751 0.92915 0.92774 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 29.01 0.42 -2.40 16 2 C -0.16 -2.68 9.84 -36.03 -0.35 -3.03 16 3 C 0.15 2.81 5.80 -5.19 -0.03 2.78 16 4 N -0.59 -12.61 2.44 -176.43 -0.43 -13.04 16 5 C 0.23 5.27 4.24 -5.19 -0.02 5.25 16 6 C -0.61 -15.34 7.80 -34.44 -0.27 -15.61 16 7 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 8 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 9 N -0.90 -25.01 13.65 55.43 0.76 -24.25 16 10 Si 1.06 23.36 29.90 -169.99 -5.08 18.28 16 11 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16 12 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 C 0.53 11.36 4.94 -10.98 -0.05 11.30 16 15 O -0.55 -12.74 16.27 5.55 0.09 -12.65 16 16 C 0.07 1.27 1.58 -67.34 -0.11 1.17 16 17 H 0.08 1.58 5.52 -51.93 -0.29 1.30 16 18 C -0.11 -2.07 6.34 -24.52 -0.16 -2.23 16 19 C -0.14 -2.12 6.94 -24.84 -0.17 -2.30 16 20 C 0.05 0.67 6.15 -2.84 -0.02 0.65 16 21 N -0.51 -8.77 4.34 -216.84 -0.94 -9.72 16 22 C 0.07 1.13 2.27 -67.71 -0.15 0.98 16 23 C -0.14 -1.78 9.05 37.16 0.34 -1.45 16 24 C -0.14 -2.32 8.47 37.15 0.31 -2.00 16 25 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.10 1.47 7.84 -52.49 -0.41 1.06 16 27 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.07 1.43 7.17 -51.93 -0.37 1.06 16 29 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 30 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 31 H 0.02 0.57 5.82 -51.93 -0.30 0.27 16 32 H 0.27 7.34 7.22 -40.82 -0.29 7.04 16 33 H 0.10 2.13 6.65 -51.93 -0.35 1.79 16 34 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.70 6.28 -51.93 -0.33 0.38 16 39 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.63 6.45 -51.93 -0.33 0.29 16 43 H 0.05 0.96 6.17 -51.93 -0.32 0.64 16 44 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -28.48 353.31 -8.32 -36.80 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.67 Total: 5.61 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.37 Total: -6.36 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.62 Total: -47.00 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.08 Total: 18.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.48 -8.32 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.182 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds