Wall clock time and date at job start Tue Mar 31 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99995 * 2 1 4 4 N 1.46503 * 109.47506 * 124.35303 * 3 2 1 5 5 C 1.46494 * 120.00121 * 90.99632 * 4 3 2 6 6 C 1.50706 * 109.47019 * 90.00120 * 5 4 3 7 7 H 1.07996 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99668 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00428 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99696 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46982 * 60.00373 * 10 8 6 12 12 H 1.48497 * 109.47257 * 300.00009 * 10 8 6 13 13 H 1.48505 * 109.46749 * 180.02562 * 10 8 6 14 14 C 1.34778 * 119.99870 * 270.99749 * 4 3 2 15 15 O 1.21283 * 120.00080 * 4.76437 * 14 4 3 16 16 C 1.50701 * 119.99988 * 184.76118 * 14 4 3 17 17 H 1.08997 * 110.32933 * 325.14269 * 16 14 4 18 18 C 1.54907 * 110.36947 * 87.39776 * 16 14 4 19 19 C 1.55268 * 101.59510 * 155.81867 * 18 16 14 20 20 C 1.54313 * 103.08287 * 324.48205 * 19 18 16 21 21 N 1.47444 * 107.23700 * 22.21118 * 20 19 18 22 22 C 1.46902 * 111.00551 * 123.25153 * 21 20 19 23 23 C 1.53001 * 109.46715 * 59.15724 * 22 21 20 24 24 C 1.52992 * 109.47207 * 179.15770 * 22 21 20 25 25 H 1.08002 * 119.99967 * 174.62637 * 1 2 3 26 26 H 1.08001 * 120.00046 * 354.63688 * 1 2 3 27 27 H 1.07997 * 120.00013 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47516 * 4.34827 * 3 2 1 29 29 H 1.09006 * 109.47336 * 244.35475 * 3 2 1 30 30 H 1.09002 * 109.47189 * 330.00509 * 5 4 3 31 31 H 1.08994 * 109.47345 * 210.00322 * 5 4 3 32 32 H 0.97005 * 119.99944 * 359.97438 * 9 8 6 33 33 H 1.09001 * 110.98718 * 273.98948 * 18 16 14 34 34 H 1.08990 * 110.99448 * 37.80830 * 18 16 14 35 35 H 1.08999 * 110.73927 * 206.05011 * 19 18 16 36 36 H 1.08993 * 110.75824 * 82.93151 * 19 18 16 37 37 H 1.08997 * 109.89288 * 262.80160 * 20 19 18 38 38 H 1.08998 * 110.02074 * 141.68780 * 20 19 18 39 39 H 1.09001 * 109.46972 * 299.16360 * 22 21 20 40 40 H 1.08997 * 109.47040 * 60.00115 * 23 22 21 41 41 H 1.08993 * 109.46868 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47354 * 300.00271 * 23 22 21 43 43 H 1.09004 * 109.47135 * 60.00401 * 24 22 21 44 44 H 1.09010 * 109.47147 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.47636 * 300.00183 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9827 1.3384 1.1403 5 6 4.3560 0.8515 0.9886 6 6 5.2475 1.9883 0.5595 7 1 4.8326 2.9748 0.4148 8 6 6.5929 1.7690 0.3528 9 7 7.0982 0.5678 0.5295 10 14 7.6981 3.1783 -0.1784 11 1 7.6629 4.2494 0.8496 12 1 7.2196 3.7209 -1.4752 13 1 9.0902 2.6847 -0.3323 14 6 2.5648 1.8169 2.3289 15 8 1.4053 2.1393 2.4791 16 6 3.5384 1.9514 3.4714 17 1 4.2675 1.1417 3.4449 18 6 4.2540 3.3239 3.4113 19 6 4.6675 3.5255 4.8943 20 6 3.4916 2.8993 5.6730 21 7 2.8189 1.9541 4.7630 22 6 2.7743 0.6054 5.3436 23 6 2.0238 0.6485 6.6762 24 6 2.0521 -0.3402 4.3819 25 1 -0.5400 -0.9312 -0.0876 26 1 -0.5400 0.9312 0.0874 27 1 1.8500 -0.9353 0.0004 28 1 1.3578 2.1321 0.0779 29 1 2.6304 1.3974 -0.9265 30 1 4.3815 0.0652 0.2341 31 1 4.7076 0.4533 1.9403 32 1 6.5244 -0.1640 0.8057 33 1 5.1289 3.2800 2.7627 34 1 3.5690 4.1076 3.0879 35 1 4.7631 4.5859 5.1277 36 1 5.5971 2.9993 5.1110 37 1 2.7939 3.6781 5.9807 38 1 3.8646 2.3687 6.5491 39 1 3.7904 0.2479 5.5103 40 1 1.0078 1.0061 6.5096 41 1 1.9911 -0.3521 7.1072 42 1 2.5383 1.3223 7.3614 43 1 2.5869 -0.3708 3.4325 44 1 2.0187 -1.3409 4.8129 45 1 1.0360 0.0174 4.2152 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820223606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:36 Heat of formation + Delta-G solvation = -29.722061 kcal Electronic energy + Delta-G solvation = -23941.271177 eV Core-core repulsion = 20765.459695 eV Total energy + Delta-G solvation = -3175.811482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47855 -39.40778 -37.07428 -35.59081 -35.23325 -33.90629 -30.89973 -30.18134 -28.87842 -27.90429 -27.04367 -25.00069 -23.69460 -22.30785 -21.19944 -20.79965 -20.06068 -18.81076 -18.29956 -17.52821 -16.91171 -16.36702 -15.96759 -15.60802 -15.55286 -15.39155 -14.93093 -14.56062 -14.20604 -14.11803 -14.07065 -13.66083 -13.61228 -13.31302 -13.19855 -13.00551 -12.64670 -12.52718 -12.37142 -12.33053 -12.26355 -12.07324 -11.96154 -11.90621 -11.78226 -11.64077 -11.18045 -10.78334 -10.56574 -10.29533 -9.46055 -9.24188 -8.61141 -6.38830 1.21785 1.55831 1.60544 1.76910 1.80419 2.25270 2.55787 3.02926 3.14988 3.56776 3.72066 3.84869 3.93915 4.01272 4.03944 4.11568 4.16698 4.19626 4.35037 4.45607 4.55641 4.62813 4.66724 4.71026 4.71396 4.79327 4.84441 4.89050 4.91527 4.95036 4.97555 5.01534 5.14667 5.21010 5.29281 5.33047 5.58596 5.63236 5.77232 5.83931 5.94213 6.13894 6.17487 6.49440 6.67249 7.34056 7.43916 8.72921 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.007819 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.802053 B = 3579.967976 C = 4968.665351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.145 3.855 4 N -0.598 5.598 5 C 0.244 3.756 6 C -0.608 4.608 7 H 0.048 0.952 8 C -0.016 4.016 9 N -0.929 5.929 10 Si 1.104 2.896 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.285 1.285 14 C 0.531 3.469 15 O -0.569 6.569 16 C 0.071 3.929 17 H 0.058 0.942 18 C -0.113 4.113 19 C -0.132 4.132 20 C 0.045 3.955 21 N -0.520 5.520 22 C 0.068 3.932 23 C -0.132 4.132 24 C -0.136 4.136 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.078 0.922 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 1.003 8.528 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C 0.023 3.977 4 N -0.329 5.329 5 C 0.122 3.878 6 C -0.646 4.646 7 H 0.067 0.933 8 C -0.216 4.216 9 N -0.565 5.565 10 Si 0.926 3.074 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.210 1.210 14 C 0.319 3.681 15 O -0.449 6.449 16 C -0.041 4.041 17 H 0.075 0.925 18 C -0.152 4.152 19 C -0.170 4.170 20 C -0.082 4.082 21 N -0.246 5.246 22 C -0.040 4.040 23 C -0.190 4.190 24 C -0.194 4.194 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.097 0.903 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.306 1.697 8.152 10.445 hybrid contribution -0.584 -1.043 -0.070 1.197 sum -6.890 0.654 8.081 10.640 Atomic orbital electron populations 1.23948 0.95104 1.02696 0.98147 1.23207 0.96803 0.98032 1.02013 1.20486 0.92072 0.96018 0.89164 1.48065 1.13147 1.61662 1.10037 1.19157 0.78267 0.94651 0.95678 1.22415 0.95476 0.96386 1.50321 0.93338 1.26956 0.98134 1.02422 0.94093 1.70938 1.39331 1.01406 1.44870 0.83080 0.74444 0.72538 0.77300 1.19324 1.20077 1.21047 1.20447 0.88219 0.75845 0.83600 1.90543 1.19471 1.51638 1.83203 1.22254 0.92531 0.99711 0.89564 0.92463 1.22606 0.99978 0.93782 0.98806 1.22808 0.98369 1.02983 0.92880 1.22912 0.94718 0.95632 0.94918 1.63265 1.51437 1.08294 1.01558 1.21907 0.98068 0.88121 0.95930 1.21806 1.00345 1.02837 0.93973 1.21795 1.00300 0.99360 0.97921 0.86253 0.88594 0.87808 0.91181 0.90100 0.97086 0.96726 0.93235 0.90191 0.92119 0.88425 0.91047 0.89762 0.90441 0.94404 0.92595 0.90517 0.91226 0.95837 0.90266 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 14.32 67.78 0.97 -3.71 16 2 C -0.18 -6.16 9.84 25.64 0.25 -5.91 16 3 C 0.14 5.67 5.80 85.63 0.50 6.16 16 4 N -0.60 -26.20 2.44 -830.49 -2.03 -28.22 16 5 C 0.24 11.70 4.24 85.64 0.36 12.07 16 6 C -0.61 -31.14 7.80 25.60 0.20 -30.94 16 7 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 8 C -0.02 -0.84 5.46 84.65 0.46 -0.38 16 9 N -0.93 -52.24 13.65 21.45 0.29 -51.95 16 10 Si 1.10 46.82 29.90 68.60 2.05 48.87 16 11 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 12 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.53 23.20 4.94 87.66 0.43 23.64 16 15 O -0.57 -26.87 16.27 -3.04 -0.05 -26.92 16 16 C 0.07 2.78 1.58 44.64 0.07 2.85 16 17 H 0.06 2.46 5.52 -2.39 -0.01 2.45 16 18 C -0.11 -4.20 6.34 32.02 0.20 -3.99 16 19 C -0.13 -3.71 6.94 31.82 0.22 -3.48 16 20 C 0.05 1.21 6.15 86.64 0.53 1.75 16 21 N -0.52 -17.55 4.34 -839.95 -3.65 -21.20 16 22 C 0.07 2.01 2.27 44.91 0.10 2.11 16 23 C -0.13 -2.97 9.05 71.98 0.65 -2.32 16 24 C -0.14 -4.36 8.47 71.98 0.61 -3.75 16 25 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 26 H 0.10 2.81 7.84 -2.91 -0.02 2.79 16 27 H 0.10 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.07 2.76 7.17 -2.38 -0.02 2.75 16 29 H 0.08 3.15 8.07 -2.38 -0.02 3.13 16 30 H 0.01 0.56 7.94 -2.39 -0.02 0.54 16 31 H 0.01 0.75 5.82 -2.39 -0.01 0.73 16 32 H 0.26 14.59 7.22 -92.70 -0.67 13.92 16 33 H 0.08 3.33 6.65 -2.39 -0.02 3.32 16 34 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 1.74 6.28 -2.39 -0.02 1.72 16 39 H 0.04 1.12 8.09 -2.39 -0.02 1.10 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.35 6.45 -2.38 -0.02 1.34 16 43 H 0.02 0.86 6.17 -2.38 -0.01 0.85 16 44 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.81 353.31 3.23 -58.58 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 1.04 Total: 26.75 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.57 Total: -5.91 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -5.38 Total: -101.37 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.05 Total: 48.87 kcal Total: -61.81 3.23 -58.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.861 kcal (2) G-P(sol) polarization free energy of solvation -61.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds