Wall clock time and date at job start Tue Mar 31 2020 02:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47368 * 2 1 4 4 N 1.46903 * 109.47344 * 120.00416 * 2 1 3 5 5 C 1.46898 * 111.00380 * 73.54263 * 4 2 1 6 6 C 1.50697 * 109.46893 * 66.04831 * 5 4 2 7 7 H 1.08002 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00370 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00323 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99470 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.46841 * 90.00042 * 10 8 6 12 12 H 1.48501 * 109.46927 * 209.99873 * 10 8 6 13 13 H 1.48498 * 109.46940 * 329.99911 * 10 8 6 14 14 C 1.46904 * 110.99620 * 309.59026 * 4 2 1 15 15 N 1.46500 * 109.47150 * 208.14255 * 14 4 2 16 16 C 1.34687 * 134.74779 * 263.94509 * 15 14 4 17 17 O 1.21282 * 131.84941 * 0.06107 * 16 15 14 18 18 C 1.50639 * 96.31250 * 180.02562 * 16 15 14 19 19 C 1.46034 * 134.75059 * 83.97802 * 15 14 4 20 20 C 1.53598 * 114.83111 * 297.97572 * 19 15 14 21 21 C 1.54348 * 106.48201 * 128.37988 * 20 19 15 22 22 C 1.54921 * 104.20361 * 336.42503 * 21 20 19 23 23 C 1.54003 * 114.59161 * 62.30779 * 19 15 14 24 24 H 1.09007 * 109.46832 * 305.62503 * 1 2 3 25 25 H 1.09001 * 109.47191 * 65.62403 * 1 2 3 26 26 H 1.08994 * 109.47530 * 185.62543 * 1 2 3 27 27 H 1.08996 * 109.46848 * 239.99865 * 2 1 3 28 28 H 1.09005 * 109.47263 * 174.00336 * 3 2 1 29 29 H 1.09001 * 109.46886 * 294.00336 * 3 2 1 30 30 H 1.09001 * 109.47398 * 54.00336 * 3 2 1 31 31 H 1.08995 * 109.47085 * 186.04783 * 5 4 2 32 32 H 1.08995 * 109.47104 * 306.05369 * 5 4 2 33 33 H 0.96998 * 119.99710 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46826 * 88.14201 * 14 4 2 35 35 H 1.09000 * 109.47531 * 328.14599 * 14 4 2 36 36 H 1.09000 * 114.40467 * 246.64742 * 18 16 15 37 37 H 1.08998 * 114.40230 * 113.35637 * 18 16 15 38 38 H 1.09004 * 110.05438 * 247.62760 * 20 19 15 39 39 H 1.08999 * 110.05915 * 9.12070 * 20 19 15 40 40 H 1.08998 * 110.48707 * 95.10631 * 21 20 19 41 41 H 1.08997 * 110.48690 * 217.75066 * 21 20 19 42 42 H 1.09002 * 110.74984 * 279.46848 * 22 21 20 43 43 H 1.08997 * 110.90563 * 156.19100 * 22 21 20 44 44 H 1.08995 * 110.50143 * 13.64977 * 23 19 15 45 45 H 1.08999 * 110.49355 * 136.19866 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.8289 -2.1445 1.0838 6 6 2.7030 -2.6795 -0.0211 7 1 3.3371 -2.0082 -0.5811 8 6 2.6940 -4.0263 -0.3165 9 7 3.4572 -4.4932 -1.2803 10 14 1.5977 -5.1876 0.6526 11 1 0.2729 -5.2866 -0.0108 12 1 2.2261 -6.5320 0.7064 13 1 1.4228 -4.6673 2.0324 14 6 1.3711 -0.1712 2.4100 15 7 2.2701 -0.3356 3.5550 16 6 2.4096 -1.2583 4.5262 17 8 1.8063 -2.2840 4.7605 18 6 3.5663 -0.5912 5.2236 19 6 3.3801 0.4345 4.1095 20 6 4.5865 0.5937 3.1721 21 6 4.9044 2.1032 3.1201 22 6 3.5675 2.7866 3.5019 23 6 3.0015 1.8459 4.5954 24 1 -0.3633 0.5986 0.8354 25 1 -0.3633 0.4241 -0.9361 26 1 -0.3634 -1.0226 0.1007 27 1 1.8932 -0.5138 -0.8900 28 1 3.1248 1.4443 0.1074 29 1 1.7670 1.9243 -0.9388 30 1 1.5917 1.9864 0.8314 31 1 2.0997 -2.6226 2.0251 32 1 0.7844 -2.3567 0.8557 33 1 3.4505 -5.4407 -1.4883 34 1 0.4469 -0.7197 2.5920 35 1 1.1451 0.8865 2.2744 36 1 4.5032 -1.1459 5.1730 37 1 3.3361 -0.2187 6.2217 38 1 5.4416 0.0451 3.5669 39 1 4.3361 0.2299 2.1755 40 1 5.6811 2.3546 3.8422 41 1 5.2081 2.3947 2.1147 42 1 2.8966 2.8290 2.6438 43 1 3.7417 3.7847 3.9036 44 1 1.9185 1.9483 4.6638 45 1 3.4654 2.0549 5.5593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844686473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:34 Heat of formation + Delta-G solvation = -1.753010 kcal Electronic energy + Delta-G solvation = -24016.215442 eV Core-core repulsion = 20841.616789 eV Total energy + Delta-G solvation = -3174.598653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15356 -37.78296 -37.28208 -34.70820 -32.71328 -31.50357 -29.83284 -28.72473 -27.09701 -26.77120 -25.93156 -24.06942 -21.80271 -20.82107 -20.13205 -19.33821 -17.76124 -16.91854 -16.54930 -16.28204 -15.67011 -15.01181 -14.73394 -14.45961 -14.19759 -14.02087 -13.50193 -13.15705 -13.14824 -12.79624 -12.43445 -12.42070 -12.26697 -11.78475 -11.63861 -11.44280 -11.26063 -11.13369 -11.06581 -10.98572 -10.80961 -10.78619 -10.70584 -10.43342 -10.35150 -10.05565 -9.77212 -9.48996 -9.24683 -8.57977 -8.45776 -7.46806 -6.03382 -4.00284 2.85087 3.27168 3.33130 3.41573 3.53306 4.08325 4.47569 4.48985 4.55511 4.72717 4.81421 5.12861 5.27405 5.30883 5.32431 5.44489 5.46374 5.52819 5.56855 5.63334 5.67261 5.70565 5.79133 5.80766 5.85885 5.91459 5.96965 6.07882 6.11132 6.13446 6.18838 6.30438 6.37842 6.56599 6.63857 6.72033 6.87818 6.96273 7.07551 7.19387 7.64152 7.86316 8.01877 8.59820 8.64971 9.03376 9.59692 11.09249 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.006924 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.829275 B = 4043.135202 C = 4704.934043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 C -0.139 4.139 4 N -0.532 5.532 5 C 0.162 3.838 6 C -0.506 4.506 7 H 0.080 0.920 8 C 0.072 3.928 9 N -0.900 5.900 10 Si 0.865 3.135 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.261 1.261 14 C 0.298 3.702 15 N -0.602 5.602 16 C 0.516 3.484 17 O -0.522 6.522 18 C -0.166 4.166 19 C 0.155 3.845 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.123 4.123 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.030 0.970 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 16.502 10.215 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.025 4.025 3 C -0.196 4.196 4 N -0.257 5.257 5 C 0.036 3.964 6 C -0.544 4.544 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.539 5.539 10 Si 0.692 3.308 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.185 1.185 14 C 0.088 3.912 15 N -0.338 5.338 16 C 0.301 3.699 17 O -0.397 6.397 18 C -0.206 4.206 19 C 0.069 3.931 20 C -0.168 4.168 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.004 0.996 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.236 15.873 10.086 18.808 hybrid contribution -1.438 -1.005 0.219 1.768 sum -1.674 14.868 10.305 18.167 Atomic orbital electron populations 1.22506 0.98620 1.02001 1.01099 1.21617 0.91636 0.94192 0.95082 1.21872 1.01823 0.95720 1.00220 1.61901 1.56766 1.06752 1.00302 1.20225 0.94920 0.82979 0.98264 1.20973 1.24186 0.93429 1.15861 0.90163 1.24842 0.95322 0.97998 0.94824 1.69887 1.39525 1.14196 1.30333 0.86991 0.81015 0.80881 0.81890 1.20409 1.21132 1.18545 1.21657 0.87945 0.99345 0.82236 1.50203 1.33314 1.24293 1.25943 1.21965 0.83776 0.82629 0.81488 1.90704 1.54054 1.23581 1.71312 1.23524 1.00093 0.97604 0.99408 1.21816 0.87551 0.92266 0.91470 1.22448 0.95983 0.96287 1.02065 1.22309 0.96912 0.95128 1.01338 1.22485 0.97228 0.97865 0.98392 1.22567 1.01237 0.93386 0.98929 0.93655 0.92596 0.92171 0.87933 0.91937 0.92956 0.93870 0.95155 0.99617 0.92732 0.92990 0.89935 0.86414 0.86901 0.91181 0.88091 0.91922 0.91548 0.91412 0.91773 0.91251 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.51 37.16 0.32 -2.56 16 2 C 0.08 1.47 2.74 -67.71 -0.19 1.28 16 3 C -0.14 -1.92 9.13 37.16 0.34 -1.58 16 4 N -0.53 -10.51 4.21 -231.97 -0.98 -11.49 16 5 C 0.16 4.01 3.53 -4.98 -0.02 4.00 16 6 C -0.51 -14.38 8.87 -34.44 -0.31 -14.68 16 7 H 0.08 2.44 7.47 -52.49 -0.39 2.05 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 10 Si 0.87 22.77 27.47 -169.99 -4.67 18.10 16 11 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.26 -7.05 6.54 56.52 0.37 -6.68 16 14 C 0.30 5.09 5.17 -63.31 -0.33 4.76 16 15 N -0.60 -9.89 3.29 -189.12 -0.62 -10.51 16 16 C 0.52 9.33 9.11 -24.20 -0.22 9.11 16 17 O -0.52 -11.92 18.03 5.56 0.10 -11.82 16 18 C -0.17 -2.05 7.79 -28.13 -0.22 -2.27 16 19 C 0.15 1.94 1.46 -144.60 -0.21 1.73 16 20 C -0.13 -1.65 6.43 -25.71 -0.17 -1.81 16 21 C -0.12 -1.19 6.84 -25.01 -0.17 -1.36 16 22 C -0.12 -1.13 6.91 -24.69 -0.17 -1.30 16 23 C -0.12 -1.19 6.25 -25.18 -0.16 -1.34 16 24 H 0.04 0.62 6.88 -51.92 -0.36 0.27 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.08 6.56 -51.93 -0.34 0.74 16 27 H 0.10 2.13 6.60 -51.93 -0.34 1.79 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.53 6.57 -51.93 -0.34 0.19 16 31 H 0.03 0.83 6.98 -51.93 -0.36 0.47 16 32 H -0.01 -0.35 5.93 -51.93 -0.31 -0.65 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.05 0.97 7.76 -51.93 -0.40 0.56 16 35 H 0.08 1.19 5.59 -51.93 -0.29 0.90 16 36 H 0.12 1.34 7.76 -51.93 -0.40 0.94 16 37 H 0.11 1.06 8.04 -51.93 -0.42 0.65 16 38 H 0.07 0.84 7.64 -51.93 -0.40 0.44 16 39 H 0.10 1.65 7.78 -51.93 -0.40 1.25 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 45 H 0.08 0.61 8.07 -51.93 -0.42 0.20 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.41 348.90 -9.45 -42.86 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.72 Total: -1.27 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.59 Total: -4.01 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.82 Total: -49.11 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.10 Total: -11.82 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.41 -9.45 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844686473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.105 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds