Wall clock time and date at job start Tue Mar 31 2020 02:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47368 * 2 1 4 4 N 1.46903 * 109.47344 * 120.00416 * 2 1 3 5 5 C 1.46898 * 111.00380 * 73.54263 * 4 2 1 6 6 C 1.50697 * 109.46893 * 66.04831 * 5 4 2 7 7 H 1.08002 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00370 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00323 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99470 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.46841 * 90.00042 * 10 8 6 12 12 H 1.48501 * 109.46927 * 209.99873 * 10 8 6 13 13 H 1.48498 * 109.46940 * 329.99911 * 10 8 6 14 14 C 1.46904 * 110.99620 * 309.59026 * 4 2 1 15 15 N 1.46500 * 109.47150 * 208.14255 * 14 4 2 16 16 C 1.34687 * 134.74779 * 263.94509 * 15 14 4 17 17 O 1.21282 * 131.84941 * 0.06107 * 16 15 14 18 18 C 1.50639 * 96.31250 * 180.02562 * 16 15 14 19 19 C 1.46034 * 134.75059 * 83.97802 * 15 14 4 20 20 C 1.53598 * 114.83111 * 297.97572 * 19 15 14 21 21 C 1.54348 * 106.48201 * 128.37988 * 20 19 15 22 22 C 1.54921 * 104.20361 * 336.42503 * 21 20 19 23 23 C 1.54003 * 114.59161 * 62.30779 * 19 15 14 24 24 H 1.09007 * 109.46832 * 305.62503 * 1 2 3 25 25 H 1.09001 * 109.47191 * 65.62403 * 1 2 3 26 26 H 1.08994 * 109.47530 * 185.62543 * 1 2 3 27 27 H 1.08996 * 109.46848 * 239.99865 * 2 1 3 28 28 H 1.09005 * 109.47263 * 174.00336 * 3 2 1 29 29 H 1.09001 * 109.46886 * 294.00336 * 3 2 1 30 30 H 1.09001 * 109.47398 * 54.00336 * 3 2 1 31 31 H 1.08995 * 109.47085 * 186.04783 * 5 4 2 32 32 H 1.08995 * 109.47104 * 306.05369 * 5 4 2 33 33 H 0.96998 * 119.99710 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46826 * 88.14201 * 14 4 2 35 35 H 1.09000 * 109.47531 * 328.14599 * 14 4 2 36 36 H 1.09000 * 114.40467 * 246.64742 * 18 16 15 37 37 H 1.08998 * 114.40230 * 113.35637 * 18 16 15 38 38 H 1.09004 * 110.05438 * 247.62760 * 20 19 15 39 39 H 1.08999 * 110.05915 * 9.12070 * 20 19 15 40 40 H 1.08998 * 110.48707 * 95.10631 * 21 20 19 41 41 H 1.08997 * 110.48690 * 217.75066 * 21 20 19 42 42 H 1.09002 * 110.74984 * 279.46848 * 22 21 20 43 43 H 1.08997 * 110.90563 * 156.19100 * 22 21 20 44 44 H 1.08995 * 110.50143 * 13.64977 * 23 19 15 45 45 H 1.08999 * 110.49355 * 136.19866 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.8289 -2.1445 1.0838 6 6 2.7030 -2.6795 -0.0211 7 1 3.3371 -2.0082 -0.5811 8 6 2.6940 -4.0263 -0.3165 9 7 3.4572 -4.4932 -1.2803 10 14 1.5977 -5.1876 0.6526 11 1 0.2729 -5.2866 -0.0108 12 1 2.2261 -6.5320 0.7064 13 1 1.4228 -4.6673 2.0324 14 6 1.3711 -0.1712 2.4100 15 7 2.2701 -0.3356 3.5550 16 6 2.4096 -1.2583 4.5262 17 8 1.8063 -2.2840 4.7605 18 6 3.5663 -0.5912 5.2236 19 6 3.3801 0.4345 4.1095 20 6 4.5865 0.5937 3.1721 21 6 4.9044 2.1032 3.1201 22 6 3.5675 2.7866 3.5019 23 6 3.0015 1.8459 4.5954 24 1 -0.3633 0.5986 0.8354 25 1 -0.3633 0.4241 -0.9361 26 1 -0.3634 -1.0226 0.1007 27 1 1.8932 -0.5138 -0.8900 28 1 3.1248 1.4443 0.1074 29 1 1.7670 1.9243 -0.9388 30 1 1.5917 1.9864 0.8314 31 1 2.0997 -2.6226 2.0251 32 1 0.7844 -2.3567 0.8557 33 1 3.4505 -5.4407 -1.4883 34 1 0.4469 -0.7197 2.5920 35 1 1.1451 0.8865 2.2744 36 1 4.5032 -1.1459 5.1730 37 1 3.3361 -0.2187 6.2217 38 1 5.4416 0.0451 3.5669 39 1 4.3361 0.2299 2.1755 40 1 5.6811 2.3546 3.8422 41 1 5.2081 2.3947 2.1147 42 1 2.8966 2.8290 2.6438 43 1 3.7417 3.7847 3.9036 44 1 1.9185 1.9483 4.6638 45 1 3.4654 2.0549 5.5593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844686473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:34 Heat of formation + Delta-G solvation = -24.557246 kcal Electronic energy + Delta-G solvation = -24017.204308 eV Core-core repulsion = 20841.616789 eV Total energy + Delta-G solvation = -3175.587519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33370 -39.33046 -38.54792 -35.83434 -34.92446 -32.94571 -31.45948 -29.57169 -28.76572 -28.02791 -26.96769 -25.52312 -23.73293 -21.62089 -21.32420 -20.78477 -19.08853 -18.90529 -17.94168 -17.59424 -16.95280 -16.68209 -16.02673 -15.95067 -15.64210 -15.21751 -14.94863 -14.68789 -14.53325 -14.16237 -13.95758 -13.73338 -13.52501 -13.44551 -13.01896 -12.84744 -12.71762 -12.40797 -12.28307 -12.07792 -12.03115 -11.95786 -11.88525 -11.79896 -11.75863 -11.54657 -11.39741 -11.24487 -10.87982 -10.85751 -9.83187 -9.09342 -8.37352 -6.37179 1.18596 1.23640 1.37466 1.46911 2.05504 2.23833 2.95310 2.95835 3.17856 3.60438 3.68118 3.88619 3.95877 4.10976 4.18603 4.30507 4.34065 4.47299 4.50040 4.58070 4.63157 4.71851 4.74103 4.77594 4.82206 4.87829 4.93900 4.98751 5.01483 5.07014 5.17335 5.19253 5.24662 5.31201 5.39154 5.45252 5.47638 5.51140 5.65781 5.77117 5.81527 5.97163 6.37733 6.53771 6.68077 7.23909 7.26203 8.78742 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.006924 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.829275 B = 4043.135202 C = 4704.934043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.125 4.125 4 N -0.536 5.536 5 C 0.182 3.818 6 C -0.503 4.503 7 H 0.049 0.951 8 C 0.022 3.978 9 N -0.938 5.938 10 Si 0.926 3.074 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.276 1.276 14 C 0.299 3.701 15 N -0.608 5.608 16 C 0.489 3.511 17 O -0.585 6.585 18 C -0.143 4.143 19 C 0.152 3.848 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.114 4.114 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.001 0.999 32 H -0.020 1.020 33 H 0.267 0.733 34 H 0.033 0.967 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 19.486 12.096 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.030 4.030 3 C -0.182 4.182 4 N -0.262 5.262 5 C 0.055 3.945 6 C -0.541 4.541 7 H 0.067 0.933 8 C -0.177 4.177 9 N -0.579 5.579 10 Si 0.752 3.248 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.201 1.201 14 C 0.089 3.911 15 N -0.343 5.343 16 C 0.278 3.722 17 O -0.464 6.464 18 C -0.182 4.182 19 C 0.068 3.932 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.019 0.981 32 H -0.002 1.002 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.430 18.914 11.952 22.378 hybrid contribution -1.306 -1.872 -0.423 2.322 sum -1.737 17.042 11.529 20.648 Atomic orbital electron populations 1.22422 0.96852 1.00857 1.03347 1.21660 0.93116 0.95807 0.92387 1.21748 1.01144 0.92959 1.02367 1.61840 1.57948 1.03943 1.02452 1.19773 0.93375 0.86349 0.95036 1.21161 1.23724 0.93107 1.16127 0.93256 1.25555 0.96703 0.99647 0.95757 1.69993 1.41201 1.14833 1.31889 0.86030 0.80063 0.79132 0.79614 1.18792 1.20050 1.20149 1.21703 0.87409 1.00675 0.81297 1.50480 1.33860 1.24864 1.25101 1.23221 0.84644 0.82000 0.82374 1.90652 1.56453 1.26212 1.73095 1.23662 0.97616 0.95998 1.00951 1.22112 0.86087 0.93948 0.91021 1.22417 0.96255 0.98662 0.99710 1.22281 0.98208 0.92673 1.01804 1.22485 0.96185 0.98918 0.97969 1.22581 1.01611 0.90637 1.00360 0.91102 0.90477 0.95096 0.92133 0.92984 0.90894 0.91428 0.98093 1.00218 0.92369 0.94876 0.86387 0.85453 0.82975 0.90834 0.92332 0.89687 0.92173 0.92439 0.89250 0.91194 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.38 8.51 71.98 0.61 -4.76 16 2 C 0.08 2.79 2.74 44.91 0.12 2.91 16 3 C -0.12 -3.23 9.13 71.98 0.66 -2.58 16 4 N -0.54 -21.79 4.21 -887.83 -3.74 -25.53 16 5 C 0.18 9.44 3.53 85.56 0.30 9.74 16 6 C -0.50 -30.04 8.87 25.60 0.23 -29.81 16 7 H 0.05 3.19 7.47 -2.91 -0.02 3.17 16 8 C 0.02 1.32 5.47 84.66 0.46 1.78 16 9 N -0.94 -59.97 13.96 21.45 0.30 -59.68 16 10 Si 0.93 48.76 27.47 68.60 1.88 50.64 16 11 H -0.26 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.28 -15.18 6.54 99.48 0.65 -14.53 16 14 C 0.30 10.12 5.17 170.80 0.88 11.00 16 15 N -0.61 -19.71 3.29 -870.69 -2.86 -22.57 16 16 C 0.49 17.77 9.11 79.14 0.72 18.49 16 17 O -0.58 -27.73 18.03 -3.04 -0.05 -27.78 16 18 C -0.14 -3.18 7.79 29.69 0.23 -2.95 16 19 C 0.15 3.48 1.46 -4.43 -0.01 3.47 16 20 C -0.13 -3.18 6.43 31.25 0.20 -2.97 16 21 C -0.11 -1.88 6.84 31.71 0.22 -1.67 16 22 C -0.12 -1.68 6.91 31.92 0.22 -1.46 16 23 C -0.11 -1.69 6.25 31.60 0.20 -1.49 16 24 H 0.07 1.79 6.88 -2.38 -0.02 1.77 16 25 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.03 1.11 6.56 -2.39 -0.02 1.09 16 27 H 0.06 2.64 6.60 -2.39 -0.02 2.63 16 28 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.42 6.57 -2.39 -0.02 1.41 16 31 H 0.00 0.06 6.98 -2.39 -0.02 0.04 16 32 H -0.02 -1.04 5.93 -2.39 -0.01 -1.05 16 33 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 34 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16 35 H 0.12 3.10 5.59 -2.39 -0.01 3.09 16 36 H 0.13 2.63 7.76 -2.39 -0.02 2.61 16 37 H 0.15 2.20 8.04 -2.39 -0.02 2.18 16 38 H 0.07 1.67 7.64 -2.38 -0.02 1.65 16 39 H 0.06 1.94 7.78 -2.39 -0.02 1.92 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.09 8.11 -2.39 -0.02 1.07 16 45 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 Total: -1.00 -78.82 348.90 1.48 -77.34 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.90 Total: 7.86 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.05 Total: -0.29 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -6.30 Total: -107.77 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.88 Total: 50.64 kcal Total: -78.82 1.48 -77.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844686473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.783 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds