Wall clock time and date at job start Tue Mar 31 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47107 * 2 1 4 4 N 1.46898 * 109.46910 * 120.00077 * 2 1 3 5 5 C 1.46908 * 110.99920 * 306.67303 * 4 2 1 6 6 C 1.50695 * 109.47139 * 287.00672 * 5 4 2 7 7 H 1.08006 * 120.00088 * 357.51370 * 6 5 4 8 8 C 1.37878 * 120.00098 * 177.51253 * 6 5 4 9 9 N 1.31512 * 119.99709 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47149 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47175 * 119.99870 * 10 8 6 13 13 H 1.48505 * 109.46807 * 239.99794 * 10 8 6 14 14 C 1.46899 * 111.00411 * 70.63110 * 4 2 1 15 15 N 1.46494 * 109.47622 * 85.61709 * 14 4 2 16 16 C 1.46870 * 124.35964 * 85.96452 * 15 14 4 17 17 C 1.54696 * 105.53788 * 196.80549 * 16 15 14 18 18 C 1.53682 * 101.49384 * 335.45826 * 17 16 15 19 19 C 1.52771 * 115.46667 * 254.26896 * 18 17 16 20 20 C 1.53971 * 86.77056 * 217.66260 * 19 18 17 21 21 C 1.52761 * 115.48340 * 153.49156 * 18 17 16 22 22 C 1.34739 * 124.35945 * 265.67500 * 15 14 4 23 23 O 1.21281 * 125.14505 * 358.99544 * 22 15 14 24 24 H 1.08995 * 109.47180 * 307.55987 * 1 2 3 25 25 H 1.09008 * 109.47098 * 67.56295 * 1 2 3 26 26 H 1.09007 * 109.47029 * 187.55663 * 1 2 3 27 27 H 1.09000 * 109.47223 * 239.99642 * 2 1 3 28 28 H 1.09000 * 109.47272 * 170.92056 * 3 2 1 29 29 H 1.08999 * 109.46938 * 290.91553 * 3 2 1 30 30 H 1.08995 * 109.47299 * 50.91570 * 3 2 1 31 31 H 1.08998 * 109.46951 * 47.00772 * 5 4 2 32 32 H 1.08997 * 109.47022 * 167.00603 * 5 4 2 33 33 H 0.97002 * 119.99891 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47020 * 205.61830 * 14 4 2 35 35 H 1.09003 * 109.46836 * 325.61780 * 14 4 2 36 36 H 1.09002 * 110.23693 * 315.82770 * 16 15 14 37 37 H 1.09007 * 110.22992 * 77.79140 * 16 15 14 38 38 H 1.09000 * 111.01912 * 93.51362 * 17 16 15 39 39 H 1.09002 * 111.02109 * 217.40161 * 17 16 15 40 40 H 1.08994 * 113.66984 * 332.13218 * 19 18 17 41 41 H 1.09001 * 113.66205 * 103.19553 * 19 18 17 42 42 H 1.08996 * 113.58119 * 270.07681 * 20 19 18 43 43 H 1.08995 * 113.57860 * 139.27387 * 20 19 18 44 44 H 1.08998 * 113.66505 * 256.78843 * 21 18 17 45 45 H 1.08999 * 113.66560 * 27.85593 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4228 -0.1246 2.4157 6 6 2.0329 1.2255 2.6915 7 1 2.8169 1.6045 2.0525 8 6 1.5904 1.9769 3.7594 9 7 0.6354 1.5157 4.5371 10 14 2.3462 3.6507 4.1008 11 1 3.3929 3.9372 3.0871 12 1 1.2913 4.6935 4.0320 13 1 2.9557 3.6517 5.4550 14 6 1.7663 -2.1369 1.1137 15 7 2.8622 -2.7828 0.3872 16 6 4.1131 -3.2382 1.0076 17 6 5.1058 -3.4407 -0.1614 18 6 4.1476 -3.6836 -1.3382 19 6 4.0563 -5.1294 -1.8233 20 6 3.9574 -4.5534 -3.2478 21 6 4.6903 -3.3082 -2.7159 22 6 2.8502 -3.0405 -0.9353 23 8 1.9321 -2.7897 -1.6871 24 1 -0.3633 0.6264 0.8146 25 1 -0.3634 0.3923 -0.9499 26 1 -0.3633 -1.0188 0.1352 27 1 1.8933 -0.5139 -0.8899 28 1 3.1178 1.4468 0.1622 29 1 1.8152 1.9073 -0.9600 30 1 1.5503 2.0010 0.7976 31 1 0.3473 -0.0155 2.2759 32 1 1.6141 -0.7887 3.2585 33 1 0.3238 2.0445 5.2882 34 1 1.7006 -2.5545 2.1184 35 1 0.8285 -2.3106 0.5860 36 1 4.4901 -2.4814 1.6956 37 1 3.9523 -4.1797 1.5330 38 1 5.7060 -2.5456 -0.3242 39 1 5.7412 -4.3094 0.0112 40 1 4.9631 -5.7080 -1.6474 41 1 3.1532 -5.6445 -1.4960 42 1 2.9346 -4.3542 -3.5675 43 1 4.5304 -5.1147 -3.9858 44 1 4.2934 -2.3691 -3.1014 45 1 5.7756 -3.3738 -2.7914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872569794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:27 Heat of formation + Delta-G solvation = 3.593538 kcal Electronic energy + Delta-G solvation = -23577.000403 eV Core-core repulsion = 20402.633593 eV Total energy + Delta-G solvation = -3174.366809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04904 -38.06392 -36.77630 -35.79397 -32.60592 -31.42606 -29.64899 -27.46062 -26.42874 -26.10941 -25.86107 -24.24087 -22.25412 -21.82613 -20.72514 -18.62613 -18.25593 -16.66195 -16.28091 -15.93311 -15.56386 -15.06535 -14.84526 -14.58466 -14.04657 -13.60913 -13.41553 -13.24221 -13.05620 -12.65359 -12.44903 -12.30979 -12.22080 -12.02686 -11.47813 -11.31189 -11.25093 -11.13090 -11.04459 -10.77389 -10.71783 -10.67487 -10.38568 -10.26503 -10.21846 -10.15534 -9.52072 -9.34436 -8.99166 -8.45333 -8.36414 -7.26469 -6.02710 -3.99737 2.77384 3.29751 3.33703 3.38172 3.42751 4.26597 4.39300 4.42516 4.52657 4.73815 4.86502 4.97844 5.11340 5.29558 5.31603 5.38060 5.54183 5.60817 5.63806 5.78799 5.81417 5.83137 5.85628 5.90532 5.95253 5.99368 6.02866 6.15702 6.16631 6.32014 6.44899 6.61641 6.63608 6.77996 6.85275 7.03081 7.17111 7.42484 7.47996 7.49386 7.84279 8.10085 8.20491 8.46723 8.58478 9.05272 9.60521 11.07769 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.004599 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.554980 B = 6087.337911 C = 6288.936347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 C -0.142 4.142 4 N -0.544 5.544 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.075 0.925 8 C 0.053 3.947 9 N -0.900 5.900 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.282 3.718 15 N -0.599 5.599 16 C 0.105 3.895 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.112 4.112 20 C -0.138 4.138 21 C -0.113 4.113 22 C 0.540 3.460 23 O -0.532 6.532 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.009 0.991 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -11.906 -10.143 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.015 4.015 3 C -0.199 4.199 4 N -0.271 5.271 5 C 0.065 3.935 6 C -0.539 4.539 7 H 0.093 0.907 8 C -0.148 4.148 9 N -0.540 5.540 10 Si 0.720 3.280 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.070 3.930 15 N -0.333 5.333 16 C -0.019 4.019 17 C -0.157 4.157 18 C -0.128 4.128 19 C -0.149 4.149 20 C -0.176 4.176 21 C -0.150 4.150 22 C 0.326 3.674 23 O -0.408 6.408 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.847 -11.603 -10.268 17.368 hybrid contribution -0.472 0.841 0.487 1.080 sum 7.375 -10.762 -9.781 16.306 Atomic orbital electron populations 1.22394 0.98570 1.00991 1.01660 1.21433 0.92055 0.95687 0.92342 1.22209 1.01484 0.95695 1.00533 1.62039 1.60101 1.00428 1.04493 1.19839 0.93856 0.95177 0.84667 1.21452 1.19725 1.01263 1.11422 0.90704 1.24977 0.95364 0.98311 0.96143 1.69965 1.28601 1.37973 1.17440 0.86530 0.79159 0.84155 0.78160 1.19623 1.21188 1.21155 1.21852 0.86622 0.88773 0.95711 1.48527 1.18755 1.57648 1.08324 1.22060 0.83921 0.99842 0.96038 1.22507 0.96806 1.03000 0.93357 1.21928 0.95702 0.98718 0.96475 1.22659 1.02408 0.93414 0.96460 1.22904 1.01685 0.96848 0.96114 1.22607 0.99892 0.99290 0.93244 1.19931 0.87550 0.77727 0.82182 1.90668 1.39773 1.54699 1.55688 0.91052 0.93558 0.93864 0.91986 0.92985 0.95447 0.88797 0.97344 0.95875 0.93095 0.89919 0.92252 0.89622 0.91685 0.89854 0.89642 0.89270 0.91314 0.89405 0.91478 0.90851 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.31 37.16 0.31 -3.24 16 2 C 0.09 1.94 2.89 -67.72 -0.20 1.74 16 3 C -0.14 -2.96 7.68 37.15 0.29 -2.67 16 4 N -0.54 -11.58 4.59 -231.98 -1.06 -12.64 16 5 C 0.19 4.68 4.45 -4.97 -0.02 4.66 16 6 C -0.50 -13.28 6.68 -34.44 -0.23 -13.51 16 7 H 0.07 1.98 5.39 -52.48 -0.28 1.70 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 10 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.28 5.23 5.70 -63.32 -0.36 4.87 16 15 N -0.60 -9.71 3.19 -176.01 -0.56 -10.28 16 16 C 0.10 1.33 7.36 -2.95 -0.02 1.30 16 17 C -0.12 -1.23 6.55 -25.48 -0.17 -1.40 16 18 C -0.12 -1.51 1.03 -155.75 -0.16 -1.67 16 19 C -0.11 -1.11 7.34 -26.34 -0.19 -1.31 16 20 C -0.14 -1.43 7.83 -25.73 -0.20 -1.63 16 21 C -0.11 -1.24 7.32 -26.35 -0.19 -1.43 16 22 C 0.54 8.89 6.70 -11.19 -0.07 8.81 16 23 O -0.53 -10.46 15.93 5.56 0.09 -10.37 16 24 H 0.07 1.56 6.45 -51.93 -0.34 1.22 16 25 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.04 0.84 6.32 -51.93 -0.33 0.51 16 27 H 0.06 1.33 6.35 -51.93 -0.33 1.00 16 28 H 0.05 1.10 7.44 -51.93 -0.39 0.71 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 2.17 5.53 -51.93 -0.29 1.88 16 31 H 0.01 0.23 5.66 -51.93 -0.29 -0.06 16 32 H 0.02 0.61 7.59 -51.93 -0.39 0.21 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 1.47 7.45 -51.93 -0.39 1.08 16 35 H 0.06 1.16 5.76 -51.93 -0.30 0.86 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 40 H 0.09 0.68 7.98 -51.93 -0.41 0.27 16 41 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.09 1.08 7.87 -51.93 -0.41 0.67 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -30.08 342.33 -9.48 -39.56 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.49 Total: 1.71 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.32 Total: -4.13 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.89 Total: -48.09 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.08 -9.48 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872569794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.151 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds