Wall clock time and date at job start Tue Mar 31 2020 02:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47107 * 2 1 4 4 N 1.46898 * 109.46910 * 120.00077 * 2 1 3 5 5 C 1.46908 * 110.99920 * 306.67303 * 4 2 1 6 6 C 1.50695 * 109.47139 * 287.00672 * 5 4 2 7 7 H 1.08006 * 120.00088 * 357.51370 * 6 5 4 8 8 C 1.37878 * 120.00098 * 177.51253 * 6 5 4 9 9 N 1.31512 * 119.99709 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47149 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47175 * 119.99870 * 10 8 6 13 13 H 1.48505 * 109.46807 * 239.99794 * 10 8 6 14 14 C 1.46899 * 111.00411 * 70.63110 * 4 2 1 15 15 N 1.46494 * 109.47622 * 85.61709 * 14 4 2 16 16 C 1.46870 * 124.35964 * 85.96452 * 15 14 4 17 17 C 1.54696 * 105.53788 * 196.80549 * 16 15 14 18 18 C 1.53682 * 101.49384 * 335.45826 * 17 16 15 19 19 C 1.52771 * 115.46667 * 254.26896 * 18 17 16 20 20 C 1.53971 * 86.77056 * 217.66260 * 19 18 17 21 21 C 1.52761 * 115.48340 * 153.49156 * 18 17 16 22 22 C 1.34739 * 124.35945 * 265.67500 * 15 14 4 23 23 O 1.21281 * 125.14505 * 358.99544 * 22 15 14 24 24 H 1.08995 * 109.47180 * 307.55987 * 1 2 3 25 25 H 1.09008 * 109.47098 * 67.56295 * 1 2 3 26 26 H 1.09007 * 109.47029 * 187.55663 * 1 2 3 27 27 H 1.09000 * 109.47223 * 239.99642 * 2 1 3 28 28 H 1.09000 * 109.47272 * 170.92056 * 3 2 1 29 29 H 1.08999 * 109.46938 * 290.91553 * 3 2 1 30 30 H 1.08995 * 109.47299 * 50.91570 * 3 2 1 31 31 H 1.08998 * 109.46951 * 47.00772 * 5 4 2 32 32 H 1.08997 * 109.47022 * 167.00603 * 5 4 2 33 33 H 0.97002 * 119.99891 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47020 * 205.61830 * 14 4 2 35 35 H 1.09003 * 109.46836 * 325.61780 * 14 4 2 36 36 H 1.09002 * 110.23693 * 315.82770 * 16 15 14 37 37 H 1.09007 * 110.22992 * 77.79140 * 16 15 14 38 38 H 1.09000 * 111.01912 * 93.51362 * 17 16 15 39 39 H 1.09002 * 111.02109 * 217.40161 * 17 16 15 40 40 H 1.08994 * 113.66984 * 332.13218 * 19 18 17 41 41 H 1.09001 * 113.66205 * 103.19553 * 19 18 17 42 42 H 1.08996 * 113.58119 * 270.07681 * 20 19 18 43 43 H 1.08995 * 113.57860 * 139.27387 * 20 19 18 44 44 H 1.08998 * 113.66505 * 256.78843 * 21 18 17 45 45 H 1.08999 * 113.66560 * 27.85593 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4228 -0.1246 2.4157 6 6 2.0329 1.2255 2.6915 7 1 2.8169 1.6045 2.0525 8 6 1.5904 1.9769 3.7594 9 7 0.6354 1.5157 4.5371 10 14 2.3462 3.6507 4.1008 11 1 3.3929 3.9372 3.0871 12 1 1.2913 4.6935 4.0320 13 1 2.9557 3.6517 5.4550 14 6 1.7663 -2.1369 1.1137 15 7 2.8622 -2.7828 0.3872 16 6 4.1131 -3.2382 1.0076 17 6 5.1058 -3.4407 -0.1614 18 6 4.1476 -3.6836 -1.3382 19 6 4.0563 -5.1294 -1.8233 20 6 3.9574 -4.5534 -3.2478 21 6 4.6903 -3.3082 -2.7159 22 6 2.8502 -3.0405 -0.9353 23 8 1.9321 -2.7897 -1.6871 24 1 -0.3633 0.6264 0.8146 25 1 -0.3634 0.3923 -0.9499 26 1 -0.3633 -1.0188 0.1352 27 1 1.8933 -0.5139 -0.8899 28 1 3.1178 1.4468 0.1622 29 1 1.8152 1.9073 -0.9600 30 1 1.5503 2.0010 0.7976 31 1 0.3473 -0.0155 2.2759 32 1 1.6141 -0.7887 3.2585 33 1 0.3238 2.0445 5.2882 34 1 1.7006 -2.5545 2.1184 35 1 0.8285 -2.3106 0.5860 36 1 4.4901 -2.4814 1.6956 37 1 3.9523 -4.1797 1.5330 38 1 5.7060 -2.5456 -0.3242 39 1 5.7412 -4.3094 0.0112 40 1 4.9631 -5.7080 -1.6474 41 1 3.1532 -5.6445 -1.4960 42 1 2.9346 -4.3542 -3.5675 43 1 4.5304 -5.1147 -3.9858 44 1 4.2934 -2.3691 -3.1014 45 1 5.7756 -3.3738 -2.7914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872569794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:26 Heat of formation + Delta-G solvation = -14.665172 kcal Electronic energy + Delta-G solvation = -23577.792160 eV Core-core repulsion = 20402.633593 eV Total energy + Delta-G solvation = -3175.158566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14249 -39.60426 -38.06714 -37.04496 -34.66809 -32.87770 -31.13004 -29.25891 -27.90386 -27.44970 -26.68714 -25.75314 -24.14102 -22.79580 -21.90153 -20.32959 -19.36926 -18.57295 -17.58997 -17.34183 -16.80270 -16.59252 -16.31537 -15.94897 -15.45288 -15.01347 -14.96334 -14.54547 -14.22860 -14.10618 -13.99985 -13.62478 -13.29556 -13.21602 -13.11784 -13.04249 -12.76661 -12.62635 -12.59431 -12.46173 -12.14615 -12.05555 -11.94185 -11.89608 -11.40505 -11.23467 -11.05905 -10.98172 -10.57015 -10.49807 -9.77223 -9.04291 -8.13030 -6.16242 1.41441 1.43745 1.51800 1.55848 2.07931 2.44462 3.19287 3.29095 3.31311 3.48786 3.67136 3.92531 3.96006 3.99952 4.13408 4.20789 4.30432 4.32628 4.47963 4.49599 4.50954 4.78067 4.81236 4.83045 4.85678 4.88218 4.94790 5.03414 5.04338 5.05816 5.08027 5.18464 5.18752 5.24389 5.29912 5.46014 5.51002 5.58976 5.68967 5.77141 6.10860 6.20147 6.42000 6.60616 6.94534 7.22413 7.48039 8.97534 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.004599 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.554980 B = 6087.337911 C = 6288.936347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 C -0.133 4.133 4 N -0.545 5.545 5 C 0.206 3.794 6 C -0.503 4.503 7 H 0.075 0.925 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.955 3.045 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.285 3.715 15 N -0.605 5.605 16 C 0.097 3.903 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.109 4.109 22 C 0.526 3.474 23 O -0.574 6.574 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.069 0.931 31 H -0.013 1.013 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.632 -12.813 -10.987 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 C -0.191 4.191 4 N -0.271 5.271 5 C 0.080 3.920 6 C -0.541 4.541 7 H 0.093 0.907 8 C -0.194 4.194 9 N -0.577 5.577 10 Si 0.781 3.219 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.073 3.927 15 N -0.338 5.338 16 C -0.025 4.025 17 C -0.142 4.142 18 C -0.132 4.132 19 C -0.136 4.136 20 C -0.176 4.176 21 C -0.147 4.147 22 C 0.314 3.686 23 O -0.454 6.454 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.005 0.995 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.504 -12.532 -11.120 19.775 hybrid contribution -1.324 1.075 0.704 1.846 sum 9.180 -11.457 -10.415 18.000 Atomic orbital electron populations 1.22267 0.98099 1.00543 1.01675 1.21408 0.92399 0.95647 0.91820 1.22066 1.00691 0.95377 1.00929 1.62016 1.59776 1.01886 1.03461 1.19498 0.92580 0.94473 0.85471 1.21688 1.19382 1.01867 1.11165 0.90711 1.25741 0.95790 1.01823 0.96053 1.70082 1.30049 1.39475 1.18096 0.85531 0.78432 0.79819 0.78079 1.18743 1.21017 1.20801 1.21692 0.87485 0.87396 0.96133 1.48608 1.19344 1.57123 1.08691 1.22335 0.82875 1.00318 0.96952 1.22559 0.96039 1.04772 0.90849 1.21967 0.93354 1.00113 0.97778 1.22729 1.03641 0.92002 0.95275 1.22858 1.00373 0.97058 0.97327 1.22693 1.01669 0.98218 0.92133 1.20823 0.88725 0.77251 0.81765 1.90631 1.41698 1.56404 1.56644 0.93249 0.91741 0.93985 0.92291 0.93527 0.93060 0.91182 0.99533 0.97844 0.93065 0.89534 0.93565 0.90891 0.89369 0.89919 0.85607 0.85466 0.92527 0.92424 0.88800 0.93552 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.85 8.31 71.98 0.60 -6.25 16 2 C 0.10 4.03 2.89 44.91 0.13 4.16 16 3 C -0.13 -5.54 7.68 71.98 0.55 -4.98 16 4 N -0.55 -23.72 4.59 -887.84 -4.07 -27.79 16 5 C 0.21 10.51 4.45 85.55 0.38 10.89 16 6 C -0.50 -27.10 6.68 25.60 0.17 -26.93 16 7 H 0.07 3.98 5.39 -2.91 -0.02 3.96 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.94 -54.92 13.29 21.45 0.28 -54.64 16 10 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.28 10.86 5.70 170.81 0.97 11.84 16 15 N -0.60 -19.49 3.19 -829.18 -2.64 -22.13 16 16 C 0.10 2.28 7.36 86.89 0.64 2.92 16 17 C -0.10 -1.80 6.55 31.40 0.21 -1.60 16 18 C -0.13 -2.82 1.03 -52.98 -0.05 -2.87 16 19 C -0.10 -1.65 7.34 30.85 0.23 -1.42 16 20 C -0.14 -2.57 7.83 31.24 0.24 -2.33 16 21 C -0.11 -2.14 7.32 30.84 0.23 -1.92 16 22 C 0.53 17.21 6.70 87.54 0.59 17.80 16 23 O -0.57 -23.21 15.93 -3.03 -0.05 -23.25 16 24 H 0.05 2.23 6.45 -2.39 -0.02 2.22 16 25 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.04 1.70 6.32 -2.38 -0.02 1.68 16 27 H 0.06 2.56 6.35 -2.39 -0.02 2.54 16 28 H 0.05 1.95 7.44 -2.39 -0.02 1.93 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.26 5.53 -2.39 -0.01 3.25 16 31 H -0.01 -0.72 5.66 -2.39 -0.01 -0.73 16 32 H 0.00 0.19 7.59 -2.39 -0.02 0.17 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.09 3.18 7.45 -2.39 -0.02 3.16 16 35 H 0.05 1.88 5.76 -2.39 -0.01 1.87 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 1.47 8.13 -2.39 -0.02 1.45 16 39 H 0.13 1.21 7.87 -2.39 -0.02 1.19 16 40 H 0.13 1.21 7.98 -2.39 -0.02 1.19 16 41 H 0.06 1.10 8.11 -2.39 -0.02 1.08 16 42 H 0.06 1.42 7.87 -2.39 -0.02 1.40 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 45 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.27 342.33 1.86 -65.41 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.96 Total: 16.79 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.34 Total: -0.05 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -6.43 Total: -104.55 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -67.27 1.86 -65.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872569794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.749 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds