Wall clock time and date at job start Tue Mar 31 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00207 * 2 1 4 4 H 1.09010 * 109.47115 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47448 * 240.00105 * 3 2 1 6 6 C 1.53001 * 109.47375 * 64.99469 * 5 3 2 7 7 C 1.52997 * 109.47378 * 119.99517 * 3 2 1 8 8 C 1.50699 * 109.47367 * 185.00211 * 7 3 2 9 9 O 1.21284 * 119.99918 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00125 * 179.72244 * 8 7 3 11 11 C 1.46499 * 119.99975 * 180.27721 * 10 8 7 12 12 C 1.53042 * 109.46058 * 275.02790 * 11 10 8 13 13 C 1.53198 * 109.31370 * 178.60065 * 12 11 10 14 14 N 1.46923 * 108.76173 * 54.65673 * 13 12 11 15 15 C 1.36941 * 120.62719 * 126.36108 * 14 13 12 16 16 H 1.08004 * 120.00078 * 208.01615 * 15 14 13 17 17 C 1.38808 * 119.99851 * 28.02315 * 15 14 13 18 18 N 1.31619 * 120.00467 * 17.52058 * 17 15 14 19 19 Si 1.86804 * 119.99906 * 197.52153 * 17 15 14 20 20 H 1.48496 * 109.46997 * 94.06531 * 19 17 15 21 21 H 1.48503 * 109.47242 * 214.06581 * 19 17 15 22 22 H 1.48502 * 109.47094 * 334.06770 * 19 17 15 23 23 C 1.46927 * 118.74211 * 306.38020 * 14 13 12 24 24 C 1.53039 * 109.46025 * 154.97735 * 11 10 8 25 25 H 1.07991 * 120.00276 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99898 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99956 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47155 * 184.99803 * 5 3 2 29 29 H 1.09003 * 109.46837 * 304.99287 * 5 3 2 30 30 H 1.09000 * 109.46898 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.47251 * 300.00275 * 6 5 3 32 32 H 1.08998 * 109.46593 * 60.00162 * 6 5 3 33 33 H 1.08992 * 109.47189 * 65.00295 * 7 3 2 34 34 H 1.09005 * 109.46894 * 305.00212 * 7 3 2 35 35 H 0.96996 * 120.00109 * 0.28148 * 10 8 7 36 36 H 1.08996 * 109.46536 * 35.00307 * 11 10 8 37 37 H 1.08997 * 109.50179 * 298.56857 * 12 11 10 38 38 H 1.09002 * 109.49390 * 58.66589 * 12 11 10 39 39 H 1.09003 * 109.59844 * 294.86760 * 13 12 11 40 40 H 1.08995 * 109.69964 * 174.50606 * 13 12 11 41 41 H 0.96994 * 120.00304 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.58897 * 293.82850 * 23 14 13 43 43 H 1.09003 * 109.70532 * 173.46785 * 23 14 13 44 44 H 1.09004 * 109.49719 * 301.33600 * 24 11 10 45 45 H 1.08995 * 109.50235 * 61.43477 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 3.6019 2.7400 1.3127 9 8 3.3886 3.5596 0.4445 10 7 4.4234 3.0423 2.3375 11 6 5.0591 4.3606 2.4024 12 6 6.3422 4.3495 1.5684 13 6 6.9857 5.7392 1.6101 14 7 7.1819 6.1272 3.0135 15 6 8.4144 6.5196 3.4631 16 1 8.6841 6.3711 4.4983 17 6 9.3171 7.1084 2.5883 18 7 8.8969 7.6034 1.4434 19 14 11.1285 7.1981 3.0359 20 1 11.8402 6.0311 2.4557 21 1 11.7107 8.4523 2.4942 22 1 11.2746 7.1824 4.5136 23 6 6.0307 6.0857 3.9255 24 6 5.3978 4.6922 3.8575 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5540 2.2878 -1.2055 29 1 3.5907 0.5105 -1.2951 30 1 2.6833 1.4880 -3.3853 31 1 1.4456 0.5290 -2.5390 32 1 1.4091 2.3063 -2.4494 33 1 3.7084 0.6114 1.2057 34 1 2.3277 1.2396 2.1370 35 1 4.5938 2.3870 3.0321 36 1 4.3762 5.1130 2.0080 37 1 7.0358 3.6148 1.9774 38 1 6.1034 4.0902 0.5369 39 1 6.3313 6.4599 1.1197 40 1 7.9485 5.7137 1.1000 41 1 9.5276 8.0151 0.8324 42 1 5.2984 6.8347 3.6240 43 1 6.3615 6.2875 4.9444 44 1 4.4867 4.6769 4.4557 45 1 6.1003 3.9544 4.2449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932217127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:07 Heat of formation + Delta-G solvation = -19.737238 kcal Electronic energy + Delta-G solvation = -22367.595110 eV Core-core repulsion = 19192.216603 eV Total energy + Delta-G solvation = -3175.378507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.91344 -37.72138 -36.52866 -34.35760 -32.21262 -31.90622 -30.69258 -29.91405 -29.18593 -25.44081 -24.25237 -22.25098 -22.10181 -21.61590 -20.10716 -19.76742 -19.18886 -17.04672 -16.54891 -15.90396 -15.22540 -14.89765 -14.85350 -14.68443 -14.03886 -13.81717 -13.51579 -13.36416 -13.04501 -13.00986 -12.78878 -12.41760 -12.33643 -11.96031 -11.48721 -11.31703 -11.22658 -11.11560 -10.91442 -10.80285 -10.74334 -10.68391 -10.35781 -10.21599 -10.04280 -9.75913 -9.70814 -9.57293 -9.30541 -8.66797 -8.41004 -6.68391 -5.78143 -3.21125 2.07725 2.85353 3.37566 3.44646 3.44974 3.46549 4.49749 4.61249 4.63125 4.91762 5.06510 5.11134 5.23866 5.32310 5.36075 5.41832 5.42811 5.47232 5.64034 5.64651 5.68138 5.83191 5.84557 5.89790 6.07408 6.09264 6.24739 6.26357 6.32869 6.38361 6.44402 6.49190 6.61238 6.64385 6.65840 6.78301 6.93037 6.97191 7.38059 7.67889 7.77647 7.80190 8.45177 8.48240 9.21344 9.84732 10.41539 11.30389 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032851 B = 0.003320 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.128732 B = 8432.199363 C = 8890.092923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.537 6.537 10 N -0.727 5.727 11 C 0.150 3.850 12 C -0.145 4.145 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.149 3.851 24 C -0.139 4.139 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.394 0.606 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.088 0.912 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 -15.610 -0.556 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.161 4.161 3 C -0.064 4.064 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.204 4.204 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.414 6.414 10 N -0.377 5.377 11 C 0.047 3.953 12 C -0.186 4.186 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.021 3.979 24 C -0.179 4.179 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.227 0.773 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.784 -14.891 -1.299 20.333 hybrid contribution 1.032 -0.387 0.530 1.223 sum -12.752 -15.278 -0.769 19.915 Atomic orbital electron populations 1.23841 0.95957 1.01705 1.01721 1.22960 0.95912 0.98102 0.99079 1.20154 0.96918 0.95481 0.93886 0.90007 1.21668 0.98054 1.03056 0.93250 1.21723 0.99763 1.01394 0.97547 1.21704 1.00116 0.95585 1.00094 1.20604 0.78934 0.89362 0.81675 1.90683 1.62329 1.50338 1.38057 1.46371 1.47685 1.17523 1.26113 1.21018 0.94468 0.83181 0.96641 1.22546 0.95737 1.01932 0.98353 1.20750 0.99957 0.88787 0.85775 1.44105 1.04945 1.76563 1.05936 1.19193 0.90013 1.33359 0.95875 0.91622 1.25061 0.99029 0.97713 0.97826 1.70042 1.33203 1.40127 1.11098 0.86277 0.85467 0.77098 0.77931 1.21489 1.21768 1.20396 1.20834 0.90104 0.91943 0.94987 1.22332 0.99823 1.01256 0.94459 0.88608 0.88678 0.87507 0.89463 0.92714 0.93057 0.93163 0.92807 0.89042 0.89141 0.77295 0.90129 0.92768 0.92911 0.96183 0.89341 0.93582 0.96250 0.92379 0.92707 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 14.32 29.02 0.42 -1.13 16 2 C -0.14 -1.20 7.75 -36.03 -0.28 -1.48 16 3 C -0.05 -0.47 1.80 -91.77 -0.17 -0.64 16 4 H 0.08 0.98 7.60 -51.92 -0.39 0.58 16 5 C -0.12 -1.40 5.18 -26.73 -0.14 -1.54 16 6 C -0.15 -1.53 9.73 37.16 0.36 -1.17 16 7 C -0.13 -1.33 5.16 -27.88 -0.14 -1.47 16 8 C 0.51 7.12 7.47 -10.99 -0.08 7.04 16 9 O -0.54 -9.65 13.65 5.55 0.08 -9.58 16 10 N -0.73 -9.90 5.08 -53.77 -0.27 -10.17 16 11 C 0.15 2.60 2.42 -67.89 -0.16 2.44 16 12 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 13 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16 14 N -0.59 -14.86 2.99 -172.31 -0.52 -15.37 16 15 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 16 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 18 N -0.90 -26.43 11.22 55.49 0.62 -25.80 16 19 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 24 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 25 H 0.10 0.77 7.83 -52.49 -0.41 0.36 16 26 H 0.09 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 28 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 7.38 -51.93 -0.38 0.08 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.39 4.17 8.60 -40.82 -0.35 3.82 16 36 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -31.01 355.92 -8.53 -39.54 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.01 Total: 2.68 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.77 Total: -3.33 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.17 Total: -51.35 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.01 -8.53 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932217127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.804 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds