Wall clock time and date at job start Tue Mar 31 2020 01:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00207 * 2 1 4 4 H 1.09010 * 109.47115 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47448 * 240.00105 * 3 2 1 6 6 C 1.53001 * 109.47375 * 64.99469 * 5 3 2 7 7 C 1.52997 * 109.47378 * 119.99517 * 3 2 1 8 8 C 1.50699 * 109.47367 * 185.00211 * 7 3 2 9 9 O 1.21284 * 119.99918 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00125 * 179.72244 * 8 7 3 11 11 C 1.46499 * 119.99975 * 180.27721 * 10 8 7 12 12 C 1.53042 * 109.46058 * 275.02790 * 11 10 8 13 13 C 1.53198 * 109.31370 * 178.60065 * 12 11 10 14 14 N 1.46923 * 108.76173 * 54.65673 * 13 12 11 15 15 C 1.36941 * 120.62719 * 126.36108 * 14 13 12 16 16 H 1.08004 * 120.00078 * 208.01615 * 15 14 13 17 17 C 1.38808 * 119.99851 * 28.02315 * 15 14 13 18 18 N 1.31619 * 120.00467 * 17.52058 * 17 15 14 19 19 Si 1.86804 * 119.99906 * 197.52153 * 17 15 14 20 20 H 1.48496 * 109.46997 * 94.06531 * 19 17 15 21 21 H 1.48503 * 109.47242 * 214.06581 * 19 17 15 22 22 H 1.48502 * 109.47094 * 334.06770 * 19 17 15 23 23 C 1.46927 * 118.74211 * 306.38020 * 14 13 12 24 24 C 1.53039 * 109.46025 * 154.97735 * 11 10 8 25 25 H 1.07991 * 120.00276 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99898 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99956 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47155 * 184.99803 * 5 3 2 29 29 H 1.09003 * 109.46837 * 304.99287 * 5 3 2 30 30 H 1.09000 * 109.46898 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.47251 * 300.00275 * 6 5 3 32 32 H 1.08998 * 109.46593 * 60.00162 * 6 5 3 33 33 H 1.08992 * 109.47189 * 65.00295 * 7 3 2 34 34 H 1.09005 * 109.46894 * 305.00212 * 7 3 2 35 35 H 0.96996 * 120.00109 * 0.28148 * 10 8 7 36 36 H 1.08996 * 109.46536 * 35.00307 * 11 10 8 37 37 H 1.08997 * 109.50179 * 298.56857 * 12 11 10 38 38 H 1.09002 * 109.49390 * 58.66589 * 12 11 10 39 39 H 1.09003 * 109.59844 * 294.86760 * 13 12 11 40 40 H 1.08995 * 109.69964 * 174.50606 * 13 12 11 41 41 H 0.96994 * 120.00304 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.58897 * 293.82850 * 23 14 13 43 43 H 1.09003 * 109.70532 * 173.46785 * 23 14 13 44 44 H 1.09004 * 109.49719 * 301.33600 * 24 11 10 45 45 H 1.08995 * 109.50235 * 61.43477 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 3.6019 2.7400 1.3127 9 8 3.3886 3.5596 0.4445 10 7 4.4234 3.0423 2.3375 11 6 5.0591 4.3606 2.4024 12 6 6.3422 4.3495 1.5684 13 6 6.9857 5.7392 1.6101 14 7 7.1819 6.1272 3.0135 15 6 8.4144 6.5196 3.4631 16 1 8.6841 6.3711 4.4983 17 6 9.3171 7.1084 2.5883 18 7 8.8969 7.6034 1.4434 19 14 11.1285 7.1981 3.0359 20 1 11.8402 6.0311 2.4557 21 1 11.7107 8.4523 2.4942 22 1 11.2746 7.1824 4.5136 23 6 6.0307 6.0857 3.9255 24 6 5.3978 4.6922 3.8575 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5540 2.2878 -1.2055 29 1 3.5907 0.5105 -1.2951 30 1 2.6833 1.4880 -3.3853 31 1 1.4456 0.5290 -2.5390 32 1 1.4091 2.3063 -2.4494 33 1 3.7084 0.6114 1.2057 34 1 2.3277 1.2396 2.1370 35 1 4.5938 2.3870 3.0321 36 1 4.3762 5.1130 2.0080 37 1 7.0358 3.6148 1.9774 38 1 6.1034 4.0902 0.5369 39 1 6.3313 6.4599 1.1197 40 1 7.9485 5.7137 1.1000 41 1 9.5276 8.0151 0.8324 42 1 5.2984 6.8347 3.6240 43 1 6.3615 6.2875 4.9444 44 1 4.4867 4.6769 4.4557 45 1 6.1003 3.9544 4.2449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932217127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:06 Heat of formation + Delta-G solvation = -38.486251 kcal Electronic energy + Delta-G solvation = -22368.408128 eV Core-core repulsion = 19192.216603 eV Total energy + Delta-G solvation = -3176.191526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09256 -39.18248 -37.56978 -35.92140 -33.94338 -32.62959 -32.06357 -31.53913 -30.58489 -27.08620 -25.48882 -23.92358 -23.54416 -22.64660 -21.35069 -20.81163 -20.44193 -18.83077 -17.78972 -17.26201 -16.69204 -16.26537 -15.81462 -15.62520 -15.52006 -15.36724 -15.00962 -14.73915 -14.48202 -14.29166 -14.05694 -13.67070 -13.46067 -13.19601 -13.03192 -12.78375 -12.62836 -12.60149 -12.16033 -12.06793 -12.02279 -12.00016 -11.87231 -11.61887 -11.58216 -11.47449 -11.34553 -10.61453 -10.58076 -10.16195 -9.92790 -8.73059 -7.88547 -5.35064 1.45553 1.47092 1.48345 1.57941 1.75771 2.31831 2.50834 3.27073 3.63738 3.75884 3.84157 3.89938 4.07492 4.13623 4.27584 4.33903 4.42137 4.45145 4.46687 4.60650 4.65013 4.65935 4.79197 4.80807 4.91173 4.98909 5.04469 5.07082 5.08247 5.12891 5.13132 5.22800 5.30793 5.42864 5.44875 5.48624 5.62578 5.64225 5.68350 5.80663 5.99328 6.37287 6.70215 7.12014 7.41224 7.83011 8.35910 9.18538 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032851 B = 0.003320 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.128732 B = 8432.199363 C = 8890.092923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.044 4.044 4 H 0.058 0.942 5 C -0.123 4.123 6 C -0.144 4.144 7 C -0.124 4.124 8 C 0.503 3.497 9 O -0.582 6.582 10 N -0.714 5.714 11 C 0.162 3.838 12 C -0.129 4.129 13 C 0.183 3.817 14 N -0.610 5.610 15 C -0.262 4.262 16 H 0.074 0.926 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.263 1.263 23 C 0.141 3.859 24 C -0.121 4.121 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.414 0.586 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.044 0.956 39 H -0.014 1.014 40 H 0.054 0.946 41 H 0.249 0.751 42 H 0.009 0.991 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 -18.650 1.383 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.161 4.161 6 C -0.202 4.202 7 C -0.164 4.164 8 C 0.291 3.709 9 O -0.462 6.462 10 N -0.366 5.366 11 C 0.056 3.944 12 C -0.169 4.169 13 C 0.056 3.944 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.092 0.908 17 C -0.250 4.250 18 N -0.585 5.585 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.188 1.188 23 C 0.015 3.985 24 C -0.161 4.161 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.251 0.749 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.004 0.996 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.520 -17.979 0.693 23.121 hybrid contribution 1.172 0.605 -0.096 1.323 sum -13.348 -17.374 0.597 21.918 Atomic orbital electron populations 1.23990 0.95953 1.02263 1.00639 1.22891 0.95948 0.97464 0.99990 1.20085 0.96524 0.96050 0.93617 0.92314 1.21628 0.98224 1.01836 0.94400 1.21699 0.99637 1.01553 0.97284 1.21729 1.00681 0.93023 1.00924 1.21437 0.78302 0.90526 0.80594 1.90686 1.63700 1.52137 1.39700 1.46097 1.47183 1.16414 1.26868 1.20595 0.92507 0.84692 0.96566 1.22282 0.97081 0.98799 0.98716 1.20457 0.97737 0.90651 0.85534 1.44360 1.05812 1.76782 1.06379 1.19591 0.91074 1.32324 0.96204 0.90817 1.25890 1.03208 0.97969 0.97948 1.70217 1.34296 1.41632 1.12348 0.85210 0.80190 0.76489 0.78309 1.21311 1.22443 1.18757 1.21046 0.88674 0.94442 0.94366 1.22126 1.01302 0.98503 0.94124 0.89354 0.86885 0.85656 0.93039 0.91301 0.93021 0.91591 0.94052 0.86480 0.86405 0.74869 0.92875 0.92038 0.93755 0.99551 0.92791 0.94179 0.97280 0.91424 0.89112 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 14.32 67.78 0.97 -1.55 16 2 C -0.15 -2.01 7.75 25.65 0.20 -1.82 16 3 C -0.04 -0.84 1.80 -11.54 -0.02 -0.86 16 4 H 0.06 1.39 7.60 -2.38 -0.02 1.37 16 5 C -0.12 -2.74 5.18 30.59 0.16 -2.58 16 6 C -0.14 -2.95 9.73 71.98 0.70 -2.25 16 7 C -0.12 -2.08 5.16 29.85 0.15 -1.93 16 8 C 0.50 13.42 7.47 87.66 0.65 14.08 16 9 O -0.58 -21.39 13.65 -3.04 -0.04 -21.43 16 10 N -0.71 -17.80 5.08 -442.41 -2.25 -20.05 16 11 C 0.16 5.45 2.42 45.02 0.11 5.56 16 12 C -0.13 -5.20 5.65 30.67 0.17 -5.02 16 13 C 0.18 9.36 5.31 86.36 0.46 9.82 16 14 N -0.61 -31.00 2.99 -699.07 -2.09 -33.09 16 15 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 16 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 17 C -0.06 -3.12 4.90 84.86 0.42 -2.70 16 18 N -0.94 -57.29 11.22 21.65 0.24 -57.04 16 19 Si 0.97 45.14 29.59 68.60 2.03 47.17 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.14 5.70 6.51 86.36 0.56 6.26 16 24 C -0.12 -3.71 5.55 30.67 0.17 -3.54 16 25 H 0.09 1.29 7.83 -2.91 -0.02 1.26 16 26 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 27 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 28 H 0.05 1.53 5.88 -2.39 -0.01 1.51 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.13 7.38 -2.39 -0.02 1.11 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.41 7.12 8.60 -92.71 -0.80 6.32 16 36 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.05 3.11 6.06 -2.39 -0.01 3.10 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 2.59 7.94 -2.39 -0.02 2.57 16 44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.99 355.92 3.55 -67.44 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.14 Total: 17.13 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.51 Total: -0.13 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -4.10 Total: -110.18 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.43 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.99 3.55 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932217127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.955 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds