Wall clock time and date at job start Tue Mar 31 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99779 * 2 1 4 4 H 1.08997 * 109.47446 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.46950 * 120.00025 * 3 2 1 6 6 C 1.53004 * 109.47072 * 294.99984 * 5 3 2 7 7 C 1.53000 * 109.47129 * 239.99879 * 3 2 1 8 8 C 1.50694 * 109.47133 * 64.99850 * 7 3 2 9 9 O 1.21284 * 120.00123 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99877 * 179.97438 * 8 7 3 11 11 C 1.46507 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.53350 * 109.41582 * 275.13368 * 11 10 8 13 13 C 1.53194 * 109.14857 * 178.67461 * 12 11 10 14 14 N 1.46934 * 108.89214 * 54.57312 * 13 12 11 15 15 C 1.36935 * 120.62776 * 126.34278 * 14 13 12 16 16 H 1.08003 * 120.00334 * 331.82288 * 15 14 13 17 17 C 1.38816 * 120.00109 * 151.82327 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.07479 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.07501 * 17 15 14 20 20 H 1.48500 * 109.47341 * 59.99642 * 19 17 15 21 21 H 1.48496 * 109.47062 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46651 * 299.99824 * 19 17 15 23 23 C 1.46917 * 118.73910 * 306.32295 * 14 13 12 24 24 C 1.53038 * 109.46172 * 155.00137 * 11 10 8 25 25 H 1.07995 * 120.00125 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99714 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00125 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47272 * 54.99992 * 5 3 2 29 29 H 1.08994 * 109.47109 * 175.00021 * 5 3 2 30 30 H 1.08999 * 109.47079 * 300.00126 * 6 5 3 31 31 H 1.08994 * 109.47124 * 60.00046 * 6 5 3 32 32 H 1.08996 * 109.47163 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.46919 * 305.00126 * 7 3 2 34 34 H 1.09003 * 109.46800 * 185.00624 * 7 3 2 35 35 H 0.97000 * 120.00504 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.45906 * 35.03004 * 11 10 8 37 37 H 1.08992 * 109.69166 * 58.70714 * 12 11 10 38 38 H 1.09002 * 109.47268 * 298.50915 * 12 11 10 39 39 H 1.08993 * 109.58759 * 294.71698 * 13 12 11 40 40 H 1.09001 * 109.58865 * 174.43210 * 13 12 11 41 41 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.58812 * 173.39821 * 23 14 13 43 43 H 1.09004 * 109.58911 * 293.67958 * 23 14 13 44 44 H 1.09007 * 109.49142 * 61.43364 * 24 11 10 45 45 H 1.08995 * 109.49863 * 301.33893 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 6 2.0564 1.4307 2.4954 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4300 -2.4765 9 8 0.8626 1.3999 -2.3633 10 7 2.6302 1.5037 -3.7000 11 6 1.7811 1.5469 -4.8932 12 6 1.4099 0.1176 -5.3067 13 6 0.4955 0.1711 -6.5346 14 7 1.1582 0.9529 -7.5875 15 6 1.3271 0.4310 -8.8422 16 1 1.4123 -0.6373 -8.9758 17 6 1.3890 1.2751 -9.9425 18 7 0.9617 2.5162 -9.8446 19 14 2.0786 0.6497 -11.5619 20 1 1.2649 -0.4985 -12.0360 21 1 2.0355 1.7379 -12.5714 22 1 3.4842 0.2128 -11.3655 23 6 1.6356 2.3053 -7.2687 24 6 2.5386 2.2311 -6.0335 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 3.5906 0.5105 1.2952 29 1 3.5539 2.2878 1.2057 30 1 1.4089 2.3063 2.4495 31 1 1.4455 0.5290 2.5390 32 1 2.6830 1.4889 3.3853 33 1 3.5906 0.5105 -1.2951 34 1 3.5540 2.2879 -1.2055 35 1 3.5956 1.5282 -3.7907 36 1 0.8729 2.1078 -4.6726 37 1 0.8899 -0.3784 -4.4872 38 1 2.3159 -0.4367 -5.5517 39 1 -0.4486 0.6455 -6.2667 40 1 0.3071 -0.8404 -6.8943 41 1 1.0046 3.1059 -10.6135 42 1 2.2016 2.7012 -8.1119 43 1 0.7843 2.9544 -7.0631 44 1 3.4341 1.6569 -6.2714 45 1 2.8220 3.2385 -5.7290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932217129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:10 Heat of formation + Delta-G solvation = -19.253966 kcal Electronic energy + Delta-G solvation = -22370.263531 eV Core-core repulsion = 19194.905980 eV Total energy + Delta-G solvation = -3175.357551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.82076 -37.68051 -36.51150 -34.30798 -32.20071 -31.81835 -30.68042 -29.96527 -29.11108 -25.47610 -24.30880 -22.25902 -21.93896 -21.63016 -20.13968 -19.62490 -19.15702 -17.08664 -16.41830 -15.81369 -15.52243 -14.84364 -14.68185 -14.52924 -14.07093 -13.83778 -13.54395 -13.42378 -13.22187 -12.91168 -12.59024 -12.35300 -12.29867 -11.91416 -11.50629 -11.40987 -11.34089 -11.09183 -10.95138 -10.83061 -10.71190 -10.58329 -10.46990 -10.26535 -10.02349 -9.85132 -9.66164 -9.48460 -9.03638 -8.62620 -8.43615 -6.67487 -5.79039 -3.21229 2.46122 2.91908 3.38033 3.44010 3.45121 3.46578 4.49877 4.62534 4.65707 4.79435 5.08635 5.11190 5.26229 5.34388 5.35685 5.37085 5.44998 5.53504 5.59137 5.62231 5.72584 5.74148 5.78222 5.91174 5.96478 6.05814 6.10120 6.17586 6.30422 6.38643 6.55112 6.59307 6.62748 6.74827 6.81700 6.95106 6.98324 7.01397 7.32937 7.61312 7.78323 7.83842 8.45325 8.52795 9.21407 9.84659 10.42011 11.29930 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045432 B = 0.003151 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.156913 B = 8884.831618 C = 9103.317433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.153 4.153 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.507 3.493 9 O -0.534 6.534 10 N -0.728 5.728 11 C 0.152 3.848 12 C -0.137 4.137 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.394 0.606 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.091 0.909 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 -1.504 20.375 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.292 3.708 9 O -0.411 6.411 10 N -0.379 5.379 11 C 0.048 3.952 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.227 0.773 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.319 -1.394 20.300 21.032 hybrid contribution 0.884 -0.314 -1.020 1.386 sum 6.202 -1.708 19.280 20.325 Atomic orbital electron populations 1.23688 0.95934 1.01286 0.98970 1.22593 0.95982 0.96974 1.01531 1.20140 0.96543 0.97115 0.92428 0.90121 1.21545 0.97865 1.01829 0.94123 1.21758 0.99824 1.02179 0.97070 1.21730 0.98756 1.03975 0.93134 1.20603 0.89255 0.76259 0.84645 1.90702 1.14743 1.48989 1.86640 1.46388 1.10231 1.74973 1.06287 1.21053 0.93907 0.97128 0.83094 1.22406 1.00650 0.95839 0.98877 1.20869 0.92969 0.95948 0.88165 1.44078 1.65674 1.14105 1.07687 1.19153 1.44113 0.92066 0.82890 0.91718 1.25059 1.00315 0.96698 0.97616 1.70021 1.48152 1.06447 1.30198 0.86356 0.79253 0.77754 0.83328 1.20870 1.21632 1.21069 1.20732 0.94611 0.86503 0.93367 1.22519 1.00265 0.98661 0.97156 0.88641 0.89291 0.88244 0.91925 0.91911 0.92814 0.92382 0.93030 0.89180 0.89117 0.77322 0.90216 0.92770 0.92516 0.96259 0.92684 0.93552 0.89109 0.96157 0.92268 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 13.22 29.01 0.38 -1.55 16 2 C -0.15 -1.69 6.76 -36.03 -0.24 -1.93 16 3 C -0.04 -0.43 1.82 -91.77 -0.17 -0.60 16 4 H 0.08 0.94 7.60 -51.93 -0.39 0.54 16 5 C -0.12 -0.89 5.39 -26.73 -0.14 -1.03 16 6 C -0.15 -1.14 9.73 37.16 0.36 -0.78 16 7 C -0.14 -1.32 5.16 -27.89 -0.14 -1.46 16 8 C 0.51 7.10 7.54 -10.99 -0.08 7.02 16 9 O -0.53 -9.45 13.83 5.55 0.08 -9.38 16 10 N -0.73 -10.12 5.08 -53.61 -0.27 -10.40 16 11 C 0.15 2.67 2.42 -67.73 -0.16 2.50 16 12 C -0.14 -2.56 5.68 -26.45 -0.15 -2.71 16 13 C 0.15 3.24 6.50 -3.71 -0.02 3.21 16 14 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.23 11.20 55.49 0.62 -25.61 16 19 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.17 4.13 5.30 -3.72 -0.02 4.11 16 24 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 25 H 0.10 1.21 7.83 -52.49 -0.41 0.80 16 26 H 0.09 0.98 8.06 -52.48 -0.42 0.55 16 27 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 4.37 8.60 -40.82 -0.35 4.02 16 36 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -30.95 356.58 -8.65 -39.60 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.13 Total: 2.51 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.77 Total: -3.21 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.17 Total: -51.50 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.95 -8.65 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932217129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.341 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds