Wall clock time and date at job start Tue Mar 31 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 N 1.46898 * 109.47133 * 119.99822 * 2 1 3 5 5 C 1.47445 * 110.99696 * 54.15973 * 4 2 1 6 6 C 1.54319 * 107.23173 * 123.26053 * 5 4 2 7 7 C 1.55135 * 103.02286 * 22.28099 * 6 5 4 8 8 C 1.47843 * 111.00147 * 175.00098 * 4 2 1 9 9 H 1.09002 * 110.37485 * 332.57595 * 8 4 2 10 10 C 1.50695 * 110.37461 * 94.80807 * 8 4 2 11 11 O 1.21283 * 120.00226 * 359.97438 * 10 8 4 12 12 N 1.34779 * 119.99973 * 179.72730 * 10 8 4 13 13 C 1.46498 * 119.99895 * 180.27658 * 12 10 8 14 14 C 1.53002 * 109.47222 * 178.27643 * 13 12 10 15 15 C 1.50699 * 115.54533 * 65.14182 * 14 13 12 16 16 H 1.08001 * 119.99684 * 265.40131 * 15 14 13 17 17 C 1.37875 * 120.00400 * 85.40832 * 15 14 13 18 18 N 1.31518 * 119.99948 * 353.54989 * 17 15 14 19 19 Si 1.86803 * 120.00277 * 173.54936 * 17 15 14 20 20 H 1.48502 * 109.46857 * 90.00165 * 19 17 15 21 21 H 1.48500 * 109.46824 * 209.99759 * 19 17 15 22 22 H 1.48498 * 109.47195 * 329.99631 * 19 17 15 23 23 C 1.52998 * 117.49760 * 279.47024 * 14 13 12 24 24 C 1.52999 * 117.50012 * 210.80820 * 14 13 12 25 25 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47194 * 300.00055 * 1 2 3 27 27 H 1.09000 * 109.47221 * 60.00038 * 1 2 3 28 28 H 1.09004 * 109.47194 * 239.99945 * 2 1 3 29 29 H 1.09005 * 109.46806 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47118 * 300.00024 * 3 2 1 31 31 H 1.08995 * 109.47319 * 60.00155 * 3 2 1 32 32 H 1.09001 * 109.88747 * 242.65861 * 5 4 2 33 33 H 1.09000 * 109.89003 * 3.85048 * 5 4 2 34 34 H 1.09001 * 110.70458 * 140.66932 * 6 5 4 35 35 H 1.09005 * 110.70009 * 263.72100 * 6 5 4 36 36 H 1.09002 * 110.99252 * 206.26092 * 7 6 5 37 37 H 1.09000 * 110.99365 * 82.43714 * 7 6 5 38 38 H 0.96995 * 120.00346 * 0.27331 * 12 10 8 39 39 H 1.09004 * 109.47085 * 298.27534 * 13 12 10 40 40 H 1.09003 * 109.47353 * 58.27468 * 13 12 10 41 41 H 0.96996 * 120.00260 * 185.07308 * 18 17 15 42 42 H 1.08999 * 117.50079 * 359.97438 * 23 14 13 43 43 H 1.09005 * 117.49714 * 145.02181 * 23 14 13 44 44 H 1.09003 * 117.50026 * 214.97637 * 24 14 13 45 45 H 1.09005 * 117.49711 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4359 -2.0422 1.3056 6 6 2.6083 -3.0433 1.3739 7 6 3.7869 -2.1677 1.8746 8 6 3.4926 -0.8172 1.1750 9 1 3.8551 -0.8335 0.1472 10 6 4.1280 0.3175 1.9364 11 8 3.4319 1.1627 2.4580 12 7 5.4696 0.3904 2.0419 13 6 6.0870 1.4902 2.7872 14 6 7.6070 1.3145 2.7899 15 6 8.2759 1.4219 1.4438 16 1 8.4764 0.5306 0.8678 17 6 8.6321 2.6580 0.9476 18 7 8.2762 3.7507 1.5870 19 14 9.6203 2.7806 -0.6329 20 1 8.6940 2.8588 -1.7910 21 1 10.4675 3.9996 -0.5936 22 1 10.4849 1.5812 -0.7705 23 6 8.2025 0.3300 3.7983 24 6 8.3764 1.8368 4.0048 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.8328 -2.1153 2.2106 33 1 0.8211 -2.2503 0.4299 34 1 2.3924 -3.8417 2.0839 35 1 2.8220 -3.4544 0.3872 36 1 4.7432 -2.5763 1.5480 37 1 3.7600 -2.0596 2.9589 38 1 6.0264 -0.2853 1.6245 39 1 5.8317 2.4383 2.3139 40 1 5.7190 1.4856 3.8132 41 1 8.4622 4.6209 1.2010 42 1 7.5116 -0.1922 4.4601 43 1 9.0786 -0.2398 3.4883 44 1 9.3667 2.2576 3.8306 45 1 7.7997 2.3052 4.8025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935781644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:31 Heat of formation + Delta-G solvation = -12.838052 kcal Electronic energy + Delta-G solvation = -23109.157967 eV Core-core repulsion = 19934.078631 eV Total energy + Delta-G solvation = -3175.079336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03761 -37.95606 -36.48985 -34.46167 -33.06490 -31.96754 -29.87232 -29.15566 -26.92837 -26.07478 -25.11964 -22.65016 -21.39622 -21.14361 -19.99874 -19.49905 -19.01359 -17.02328 -16.41800 -16.04230 -15.05642 -14.88650 -14.61561 -14.48620 -14.22871 -13.78480 -13.49312 -13.20960 -12.85314 -12.73546 -12.37474 -12.23677 -12.02904 -11.71910 -11.55727 -11.48294 -11.20244 -11.14537 -11.00865 -10.93433 -10.86808 -10.76417 -10.68946 -10.52208 -10.25765 -9.61819 -9.09414 -8.94265 -8.49386 -8.27334 -8.13460 -7.98005 -6.07693 -4.16266 3.24625 3.32854 3.34274 3.35144 3.57849 4.27646 4.35406 4.57197 4.64920 4.86146 5.06275 5.12353 5.20323 5.22453 5.28081 5.38880 5.41323 5.47374 5.66525 5.72581 5.75128 5.81478 5.88981 5.96964 5.98765 6.06136 6.08328 6.15969 6.30088 6.35740 6.49457 6.60991 6.65572 6.70682 6.90749 7.00604 7.10991 7.20081 7.37509 7.47137 7.51972 7.81285 8.34657 8.43818 8.84287 9.06226 9.50370 11.00143 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.004832 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.045690 B = 5793.273335 C = 6320.997565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.140 4.140 4 N -0.501 5.501 5 C 0.041 3.959 6 C -0.141 4.141 7 C -0.118 4.118 8 C 0.054 3.946 9 H 0.075 0.925 10 C 0.513 3.487 11 O -0.531 6.531 12 N -0.708 5.708 13 C 0.167 3.833 14 C 0.028 3.972 15 C -0.500 4.500 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.210 4.210 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 -11.584 -2.615 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.197 4.197 4 N -0.226 5.226 5 C -0.087 4.087 6 C -0.180 4.180 7 C -0.156 4.156 8 C -0.057 4.057 9 H 0.093 0.907 10 C 0.297 3.703 11 O -0.407 6.407 12 N -0.358 5.358 13 C 0.044 3.956 14 C 0.027 3.973 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.187 4.187 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.648 -10.417 -1.781 15.728 hybrid contribution 1.145 -0.527 -1.822 2.215 sum -10.504 -10.944 -3.603 15.591 Atomic orbital electron populations 1.21939 0.94425 1.01593 1.02361 1.21784 0.95469 0.95920 0.90009 1.21843 1.01367 0.94601 1.01910 1.63207 1.03904 1.16738 1.38778 1.22892 0.96813 0.87199 1.01758 1.22794 0.95437 0.98232 1.01517 1.22669 0.98758 0.92807 1.01406 1.22510 0.89384 0.94706 0.99139 0.90719 1.20108 0.82475 0.86363 0.81402 1.90643 1.62177 1.40690 1.47224 1.45950 1.05531 1.29437 1.54834 1.20924 0.92675 0.89038 0.92965 1.19043 0.89378 0.97830 0.91024 1.20324 1.39179 0.92633 1.01580 0.92276 1.24978 0.95294 0.95870 0.96841 1.69976 1.45802 0.97539 1.37679 0.86658 0.80422 0.77690 0.83646 1.20709 1.21150 1.19818 1.23015 1.03097 0.92928 1.05730 1.22489 1.01963 0.93764 1.00446 0.92752 0.91550 0.92345 0.94680 0.92779 0.93149 0.90739 0.90485 0.92312 0.90563 0.91397 0.89986 0.90083 0.77000 0.91184 0.94675 0.92854 0.91662 0.90429 0.89879 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.95 37.16 0.33 -1.25 16 2 C 0.08 1.01 2.38 -67.71 -0.16 0.85 16 3 C -0.14 -2.15 7.96 37.16 0.30 -1.85 16 4 N -0.50 -7.11 4.28 -216.83 -0.93 -8.04 16 5 C 0.04 0.45 6.14 -2.83 -0.02 0.43 16 6 C -0.14 -1.36 6.94 -24.91 -0.17 -1.53 16 7 C -0.12 -1.40 6.47 -24.59 -0.16 -1.55 16 8 C 0.05 0.80 2.33 -67.34 -0.16 0.64 16 9 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 10 C 0.51 9.67 5.78 -10.99 -0.06 9.60 16 11 O -0.53 -11.91 14.65 5.55 0.08 -11.83 16 12 N -0.71 -13.72 5.45 -60.29 -0.33 -14.05 16 13 C 0.17 3.81 5.50 -4.04 -0.02 3.79 16 14 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 15 C -0.50 -12.76 8.63 -34.44 -0.30 -13.06 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 18 N -0.87 -24.27 12.91 55.43 0.72 -23.56 16 19 Si 0.89 20.47 29.55 -169.99 -5.02 15.45 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16 24 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 25 H 0.05 0.51 6.17 -51.93 -0.32 0.19 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.44 7.97 -51.93 -0.41 0.02 16 29 H 0.05 0.95 6.23 -51.93 -0.32 0.63 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.30 7.61 -51.93 -0.39 0.90 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.56 5.94 -51.93 -0.31 0.25 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 38 H 0.40 7.04 8.37 -40.82 -0.34 6.69 16 39 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -29.31 355.34 -9.34 -38.64 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.96 Total: 7.92 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.25 Total: -9.89 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.54 Total: -45.65 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.31 -9.34 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.803 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds