Wall clock time and date at job start Tue Mar 31 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 N 1.46898 * 109.47133 * 119.99822 * 2 1 3 5 5 C 1.47445 * 110.99696 * 54.15973 * 4 2 1 6 6 C 1.54319 * 107.23173 * 123.26053 * 5 4 2 7 7 C 1.55135 * 103.02286 * 22.28099 * 6 5 4 8 8 C 1.47843 * 111.00147 * 175.00098 * 4 2 1 9 9 H 1.09002 * 110.37485 * 332.57595 * 8 4 2 10 10 C 1.50695 * 110.37461 * 94.80807 * 8 4 2 11 11 O 1.21283 * 120.00226 * 359.97438 * 10 8 4 12 12 N 1.34779 * 119.99973 * 179.72730 * 10 8 4 13 13 C 1.46498 * 119.99895 * 180.27658 * 12 10 8 14 14 C 1.53002 * 109.47222 * 178.27643 * 13 12 10 15 15 C 1.50699 * 115.54533 * 65.14182 * 14 13 12 16 16 H 1.08001 * 119.99684 * 265.40131 * 15 14 13 17 17 C 1.37875 * 120.00400 * 85.40832 * 15 14 13 18 18 N 1.31518 * 119.99948 * 353.54989 * 17 15 14 19 19 Si 1.86803 * 120.00277 * 173.54936 * 17 15 14 20 20 H 1.48502 * 109.46857 * 90.00165 * 19 17 15 21 21 H 1.48500 * 109.46824 * 209.99759 * 19 17 15 22 22 H 1.48498 * 109.47195 * 329.99631 * 19 17 15 23 23 C 1.52998 * 117.49760 * 279.47024 * 14 13 12 24 24 C 1.52999 * 117.50012 * 210.80820 * 14 13 12 25 25 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47194 * 300.00055 * 1 2 3 27 27 H 1.09000 * 109.47221 * 60.00038 * 1 2 3 28 28 H 1.09004 * 109.47194 * 239.99945 * 2 1 3 29 29 H 1.09005 * 109.46806 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47118 * 300.00024 * 3 2 1 31 31 H 1.08995 * 109.47319 * 60.00155 * 3 2 1 32 32 H 1.09001 * 109.88747 * 242.65861 * 5 4 2 33 33 H 1.09000 * 109.89003 * 3.85048 * 5 4 2 34 34 H 1.09001 * 110.70458 * 140.66932 * 6 5 4 35 35 H 1.09005 * 110.70009 * 263.72100 * 6 5 4 36 36 H 1.09002 * 110.99252 * 206.26092 * 7 6 5 37 37 H 1.09000 * 110.99365 * 82.43714 * 7 6 5 38 38 H 0.96995 * 120.00346 * 0.27331 * 12 10 8 39 39 H 1.09004 * 109.47085 * 298.27534 * 13 12 10 40 40 H 1.09003 * 109.47353 * 58.27468 * 13 12 10 41 41 H 0.96996 * 120.00260 * 185.07308 * 18 17 15 42 42 H 1.08999 * 117.50079 * 359.97438 * 23 14 13 43 43 H 1.09005 * 117.49714 * 145.02181 * 23 14 13 44 44 H 1.09003 * 117.50026 * 214.97637 * 24 14 13 45 45 H 1.09005 * 117.49711 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4359 -2.0422 1.3056 6 6 2.6083 -3.0433 1.3739 7 6 3.7869 -2.1677 1.8746 8 6 3.4926 -0.8172 1.1750 9 1 3.8551 -0.8335 0.1472 10 6 4.1280 0.3175 1.9364 11 8 3.4319 1.1627 2.4580 12 7 5.4696 0.3904 2.0419 13 6 6.0870 1.4902 2.7872 14 6 7.6070 1.3145 2.7899 15 6 8.2759 1.4219 1.4438 16 1 8.4764 0.5306 0.8678 17 6 8.6321 2.6580 0.9476 18 7 8.2762 3.7507 1.5870 19 14 9.6203 2.7806 -0.6329 20 1 8.6940 2.8588 -1.7910 21 1 10.4675 3.9996 -0.5936 22 1 10.4849 1.5812 -0.7705 23 6 8.2025 0.3300 3.7983 24 6 8.3764 1.8368 4.0048 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.8328 -2.1153 2.2106 33 1 0.8211 -2.2503 0.4299 34 1 2.3924 -3.8417 2.0839 35 1 2.8220 -3.4544 0.3872 36 1 4.7432 -2.5763 1.5480 37 1 3.7600 -2.0596 2.9589 38 1 6.0264 -0.2853 1.6245 39 1 5.8317 2.4383 2.3139 40 1 5.7190 1.4856 3.8132 41 1 8.4622 4.6209 1.2010 42 1 7.5116 -0.1922 4.4601 43 1 9.0786 -0.2398 3.4883 44 1 9.3667 2.2576 3.8306 45 1 7.7997 2.3052 4.8025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935781644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:30 Heat of formation + Delta-G solvation = -31.506164 kcal Electronic energy + Delta-G solvation = -23109.967478 eV Core-core repulsion = 19934.078631 eV Total energy + Delta-G solvation = -3175.888846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27351 -39.39247 -38.22521 -35.50166 -34.69454 -33.95875 -30.97866 -30.14334 -28.25230 -27.66183 -26.89761 -23.83605 -22.94417 -22.31179 -21.28813 -21.11619 -20.42236 -18.51242 -17.81633 -17.46484 -16.68059 -16.47868 -16.06692 -15.85451 -15.55261 -15.31664 -14.68109 -14.43036 -14.30493 -14.03642 -13.67151 -13.54361 -13.44883 -13.15547 -12.97275 -12.88971 -12.82162 -12.62597 -12.35136 -12.23690 -12.06029 -12.03861 -11.88954 -11.72866 -11.59010 -11.47263 -10.84398 -10.65899 -10.44882 -10.01654 -9.74463 -9.19324 -8.09571 -6.22719 1.41181 1.44085 1.52442 1.86731 2.26993 2.42502 3.08562 3.18874 3.50052 3.63482 3.69816 3.96829 4.08117 4.13077 4.18732 4.23318 4.29363 4.40948 4.56542 4.60585 4.65958 4.68814 4.74547 4.76984 4.86761 4.91536 4.95761 4.98556 4.99790 5.05157 5.08301 5.09889 5.27171 5.31940 5.34126 5.40978 5.59867 5.62018 5.73522 5.79522 5.99463 6.23015 6.37233 6.83564 6.91836 7.46641 7.54219 8.98144 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.004832 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.045690 B = 5793.273335 C = 6320.997565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 C -0.134 4.134 4 N -0.528 5.528 5 C 0.039 3.961 6 C -0.130 4.130 7 C -0.116 4.116 8 C 0.060 3.940 9 H 0.084 0.916 10 C 0.509 3.491 11 O -0.573 6.573 12 N -0.703 5.703 13 C 0.185 3.815 14 C 0.005 3.995 15 C -0.502 4.502 16 H 0.065 0.935 17 C 0.024 3.976 18 N -0.910 5.910 19 Si 0.949 3.051 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.261 1.261 23 C -0.174 4.174 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.407 0.593 39 H 0.023 0.977 40 H 0.030 0.970 41 H 0.258 0.742 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -14.725 -3.891 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.192 4.192 4 N -0.254 5.254 5 C -0.088 4.088 6 C -0.168 4.168 7 C -0.154 4.154 8 C -0.052 4.052 9 H 0.102 0.898 10 C 0.295 3.705 11 O -0.452 6.452 12 N -0.353 5.353 13 C 0.061 3.939 14 C 0.005 3.995 15 C -0.540 4.540 16 H 0.083 0.917 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.775 3.225 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.186 1.186 23 C -0.211 4.211 24 C -0.200 4.200 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.242 0.758 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.109 -13.608 -3.070 18.472 hybrid contribution 1.249 0.486 -1.383 1.926 sum -10.860 -13.121 -4.452 17.605 Atomic orbital electron populations 1.21889 0.92508 1.02906 1.02301 1.21815 0.96949 0.94079 0.90344 1.21781 0.99276 0.96807 1.01310 1.63090 1.03601 1.19065 1.39621 1.22974 0.97482 0.85748 1.02577 1.22780 0.93298 0.97788 1.02924 1.22703 1.00868 0.91507 1.00324 1.22439 0.89810 0.93968 0.98948 0.89787 1.21016 0.81855 0.86895 0.80697 1.90620 1.62962 1.42572 1.49082 1.45836 1.06109 1.28688 1.54683 1.20448 0.92766 0.88252 0.92466 1.19071 0.89328 1.00277 0.90875 1.20650 1.38314 0.92632 1.02362 0.91701 1.25712 0.96348 0.95755 0.99829 1.70113 1.47472 0.97842 1.39297 0.85701 0.79017 0.77689 0.80125 1.20636 1.21637 1.18559 1.22996 1.02988 0.91500 1.03578 1.22426 1.00975 0.95964 1.00592 0.90696 0.93170 0.90879 0.93157 0.95780 0.91279 0.93734 0.90713 0.90348 0.88687 0.89614 0.88159 0.91501 0.75801 0.95829 0.95211 0.93292 0.89367 0.89402 0.91810 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.95 71.98 0.64 -2.08 16 2 C 0.08 1.90 2.38 44.92 0.11 2.01 16 3 C -0.13 -4.20 7.96 71.98 0.57 -3.63 16 4 N -0.53 -14.29 4.28 -839.93 -3.59 -17.88 16 5 C 0.04 0.74 6.14 86.65 0.53 1.27 16 6 C -0.13 -1.99 6.94 31.77 0.22 -1.77 16 7 C -0.12 -2.44 6.47 31.98 0.21 -2.23 16 8 C 0.06 1.69 2.33 44.64 0.10 1.79 16 9 H 0.08 2.21 7.69 -2.39 -0.02 2.19 16 10 C 0.51 19.51 5.78 87.66 0.51 20.02 16 11 O -0.57 -26.87 14.65 -3.04 -0.04 -26.92 16 12 N -0.70 -27.48 5.45 -463.05 -2.52 -30.01 16 13 C 0.19 8.71 5.50 86.38 0.48 9.19 16 14 C 0.01 0.25 1.38 -52.93 -0.07 0.17 16 15 C -0.50 -25.57 8.63 25.60 0.22 -25.35 16 16 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 17 C 0.02 1.28 5.39 84.65 0.46 1.74 16 18 N -0.91 -52.08 12.91 21.45 0.28 -51.80 16 19 Si 0.95 42.21 29.55 68.60 2.03 44.24 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 23 C -0.17 -6.88 9.96 30.62 0.30 -6.58 16 24 C -0.16 -7.44 9.42 30.62 0.29 -7.15 16 25 H 0.07 1.16 6.17 -2.39 -0.01 1.14 16 26 H 0.05 1.14 8.14 -2.38 -0.02 1.13 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.12 7.97 -2.38 -0.02 1.10 16 29 H 0.02 0.86 6.23 -2.38 -0.01 0.85 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.63 7.61 -2.39 -0.02 1.61 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.18 5.94 -2.39 -0.01 1.17 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 38 H 0.41 14.09 8.37 -92.71 -0.78 13.32 16 39 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 41 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 42 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 44 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -65.88 355.34 0.89 -64.99 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.18 Total: 29.99 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.57 Total: -12.60 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -5.84 Total: -99.69 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -65.88 0.89 -64.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.482 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds