Wall clock time and date at job start Tue Mar 31 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46930 * 2 1 4 4 N 1.46900 * 109.47089 * 185.19611 * 3 2 1 5 5 C 1.46898 * 110.99372 * 288.39760 * 4 3 2 6 6 C 1.50706 * 109.46770 * 160.27303 * 5 4 3 7 7 H 1.07997 * 120.00042 * 359.51093 * 6 5 4 8 8 C 1.37878 * 120.00073 * 179.52041 * 6 5 4 9 9 N 1.31512 * 119.99846 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99965 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47395 * 59.99781 * 10 8 6 12 12 H 1.48501 * 109.47164 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47219 * 299.99477 * 10 8 6 14 14 C 1.46894 * 110.99721 * 164.44656 * 4 3 2 15 15 H 1.08999 * 109.67480 * 304.84988 * 14 4 3 16 16 C 1.53355 * 109.67108 * 184.35174 * 14 4 3 17 17 C 1.52920 * 108.67073 * 172.73752 * 16 14 4 18 18 N 1.45752 * 110.49260 * 50.75483 * 17 16 14 19 19 C 1.46500 * 117.94768 * 160.64177 * 18 17 16 20 20 C 1.53005 * 117.49732 * 3.92912 * 19 18 17 21 21 C 1.53001 * 117.49712 * 295.30902 * 19 18 17 22 22 C 1.33349 * 124.10324 * 340.91576 * 18 17 16 23 23 O 1.21282 * 118.24337 * 182.22771 * 22 18 17 24 24 C 1.50179 * 123.51177 * 2.23456 * 22 18 17 25 25 H 1.09001 * 109.46832 * 60.00372 * 1 2 3 26 26 H 1.09002 * 109.46522 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46854 * 299.99969 * 1 2 3 28 28 H 1.09003 * 109.47160 * 240.00373 * 2 1 3 29 29 H 1.08997 * 109.47312 * 119.99605 * 2 1 3 30 30 H 1.08996 * 109.46665 * 65.19122 * 3 2 1 31 31 H 1.09003 * 109.46744 * 305.19322 * 3 2 1 32 32 H 1.08997 * 109.47534 * 280.26752 * 5 4 3 33 33 H 1.08999 * 109.47762 * 40.27440 * 5 4 3 34 34 H 0.97007 * 120.00038 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.60015 * 52.97966 * 16 14 4 36 36 H 1.09000 * 109.60342 * 292.49151 * 16 14 4 37 37 H 1.08998 * 109.30176 * 290.43569 * 17 16 14 38 38 H 1.09009 * 109.29684 * 171.06792 * 17 16 14 39 39 H 1.08993 * 115.55093 * 149.63447 * 19 18 17 40 40 H 1.09002 * 117.49762 * 359.97438 * 20 19 18 41 41 H 1.09000 * 117.49499 * 145.02367 * 20 19 18 42 42 H 1.09000 * 117.49444 * 214.98197 * 21 19 18 43 43 H 1.09006 * 117.49580 * 359.97438 * 21 19 18 44 44 H 1.09001 * 109.40070 * 222.28301 * 24 22 18 45 45 H 1.09004 * 109.33211 * 102.49474 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4445 -0.1254 5 6 4.1386 0.9733 1.1126 6 6 5.5477 0.5284 0.8165 7 1 5.9304 0.5822 -0.1920 8 6 6.3484 0.0525 1.8331 9 7 5.8826 -0.0128 3.0612 10 14 8.0947 -0.4997 1.4660 11 1 8.8661 0.6384 0.9047 12 1 8.7408 -0.9645 2.7197 13 1 8.0659 -1.6114 0.4818 14 6 3.9984 2.7769 -0.4967 15 1 3.5023 3.1118 -1.4076 16 6 5.5137 2.7197 -0.7252 17 6 5.9757 4.0661 -1.2841 18 7 5.4787 5.1591 -0.4579 19 6 6.1480 6.4581 -0.5625 20 6 7.2631 6.5966 -1.6010 21 6 7.6078 6.5389 -0.1115 22 6 4.4563 5.0495 0.3912 23 8 4.1046 6.0395 0.9970 24 6 3.7171 3.7656 0.6375 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7546 1.9288 0.9328 31 1 1.6027 1.9825 -0.8399 32 1 4.1591 1.7833 1.8416 33 1 3.5703 0.1353 1.5163 34 1 6.4460 -0.3473 3.7766 35 1 5.7464 1.9286 -1.4379 36 1 6.0190 2.5235 0.2205 37 1 5.5992 4.1826 -2.3003 38 1 7.0653 4.0942 -1.3015 39 1 5.5167 7.3281 -0.3824 40 1 7.4989 5.7211 -2.2061 41 1 7.3653 7.5580 -2.1044 42 1 7.9369 7.4623 0.3651 43 1 8.0700 5.6257 0.2635 44 1 2.6470 3.9673 0.6849 45 1 4.0467 3.3352 1.5832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172022263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:21 Heat of formation + Delta-G solvation = -1.016985 kcal Electronic energy + Delta-G solvation = -23444.956209 eV Core-core repulsion = 20270.389473 eV Total energy + Delta-G solvation = -3174.566736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45052 -37.90756 -37.03774 -34.79787 -33.15837 -32.39810 -30.15169 -29.25162 -27.39604 -25.25032 -23.92936 -22.76734 -22.13925 -21.98319 -20.62899 -19.50446 -18.12122 -16.99840 -16.48077 -16.02296 -15.45415 -14.98578 -14.79445 -14.41697 -14.17399 -14.03627 -13.73021 -13.41788 -13.23472 -12.66026 -12.32064 -12.27642 -11.88275 -11.81777 -11.52650 -11.44170 -11.21770 -11.07995 -10.87390 -10.78806 -10.75876 -10.56559 -10.48863 -10.36808 -10.28589 -9.87286 -9.52093 -9.47815 -9.07417 -8.44737 -8.29788 -7.31146 -6.06934 -4.05329 2.94253 3.15841 3.27581 3.34129 3.34927 3.87459 4.35741 4.66529 4.75712 4.92431 4.97072 5.09086 5.18532 5.26812 5.31475 5.43472 5.44017 5.54421 5.57697 5.69517 5.73712 5.79957 5.83119 5.92055 5.98437 6.04493 6.08045 6.08376 6.20068 6.26196 6.31781 6.38320 6.61656 6.64777 6.72132 6.80112 7.09622 7.19913 7.36155 7.74649 7.77557 8.07615 8.12112 8.47280 8.49295 8.98362 9.55164 11.03286 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.007316 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.402094 B = 3826.152101 C = 5585.413749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.528 5.528 5 C 0.181 3.819 6 C -0.506 4.506 7 H 0.072 0.928 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.100 3.900 15 H 0.068 0.932 16 C -0.129 4.129 17 C 0.107 3.893 18 N -0.575 5.575 19 C 0.077 3.923 20 C -0.187 4.187 21 C -0.193 4.193 22 C 0.532 3.468 23 O -0.567 6.567 24 C -0.172 4.172 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.002 0.998 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 7.274 -9.282 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.251 5.251 5 C 0.056 3.944 6 C -0.544 4.544 7 H 0.090 0.910 8 C -0.147 4.147 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.010 4.010 15 H 0.086 0.914 16 C -0.166 4.166 17 C -0.016 4.016 18 N -0.306 5.306 19 C -0.028 4.028 20 C -0.225 4.225 21 C -0.232 4.232 22 C 0.322 3.678 23 O -0.446 6.446 24 C -0.213 4.213 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.787 7.331 -9.158 11.866 hybrid contribution 0.860 0.148 0.614 1.067 sum -0.927 7.478 -8.543 11.392 Atomic orbital electron populations 1.21747 0.96708 1.01054 1.01111 1.21498 0.93979 0.97077 1.03070 1.22043 0.89705 0.96575 0.98986 1.62408 1.03378 1.21232 1.38033 1.19953 0.94654 0.95001 0.84743 1.21320 0.96833 1.41343 0.94914 0.91048 1.24984 0.98519 0.96068 0.95111 1.69939 1.36778 1.46763 1.00080 0.86670 0.84701 0.79200 0.77526 1.20272 1.21486 1.20182 1.21593 0.96088 0.88093 0.95202 0.91432 1.22456 0.95646 0.93330 1.05174 1.21671 0.99233 0.87037 0.93623 1.46836 1.32099 1.10220 1.41480 1.21611 0.88910 0.88572 1.03736 1.23360 1.02729 1.03682 0.92688 1.23366 0.99278 1.03804 0.96750 1.20205 0.79183 0.90767 0.77670 1.90642 1.66823 1.38520 1.48621 1.22516 1.00645 0.93435 1.04738 0.93270 0.93076 0.93204 0.91448 0.91486 0.95675 0.92478 0.98062 0.94895 0.92876 0.89105 0.87028 0.92312 0.91011 0.85313 0.88044 0.88155 0.88318 0.88340 0.89324 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.89 5.91 -26.72 -0.16 -2.05 16 3 C 0.06 0.93 4.29 -3.82 -0.02 0.91 16 4 N -0.53 -10.18 4.47 -227.82 -1.02 -11.19 16 5 C 0.18 4.26 4.32 -4.97 -0.02 4.23 16 6 C -0.51 -12.70 6.56 -34.44 -0.23 -12.92 16 7 H 0.07 1.73 5.54 -52.49 -0.29 1.44 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 10 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.10 1.73 2.29 -67.50 -0.15 1.58 16 15 H 0.07 1.07 7.98 -51.93 -0.41 0.66 16 16 C -0.13 -2.20 3.75 -26.59 -0.10 -2.30 16 17 C 0.11 1.51 5.37 -4.49 -0.02 1.49 16 18 N -0.58 -9.14 3.14 -167.37 -0.53 -9.66 16 19 C 0.08 1.07 5.97 -67.93 -0.41 0.66 16 20 C -0.19 -1.98 9.67 -26.73 -0.26 -2.24 16 21 C -0.19 -2.38 10.17 -26.73 -0.27 -2.65 16 22 C 0.53 9.91 7.47 -11.87 -0.09 9.82 16 23 O -0.57 -12.10 16.37 5.56 0.09 -12.00 16 24 C -0.17 -3.13 4.72 -28.10 -0.13 -3.26 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.21 6.68 -51.93 -0.35 0.86 16 30 H 0.03 0.44 7.48 -51.93 -0.39 0.05 16 31 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 32 H 0.00 0.05 5.41 -51.93 -0.28 -0.23 16 33 H 0.03 0.85 6.30 -51.93 -0.33 0.52 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.09 1.55 7.09 -51.93 -0.37 1.18 16 36 H 0.11 2.31 5.82 -51.93 -0.30 2.01 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.93 6.55 -51.92 -0.34 0.59 16 39 H 0.13 1.87 7.52 -51.93 -0.39 1.48 16 40 H 0.10 1.02 6.37 -51.93 -0.33 0.69 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.09 1.53 7.51 -51.93 -0.39 1.14 16 45 H 0.12 2.46 5.59 -51.93 -0.29 2.17 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -28.96 341.16 -9.57 -38.53 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.39 Total: 5.26 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.59 Total: -6.90 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.81 Total: -45.48 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.96 -9.57 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172022263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.516 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds