Wall clock time and date at job start Tue Mar 31 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46930 * 2 1 4 4 N 1.46900 * 109.47089 * 185.19611 * 3 2 1 5 5 C 1.46898 * 110.99372 * 288.39760 * 4 3 2 6 6 C 1.50706 * 109.46770 * 160.27303 * 5 4 3 7 7 H 1.07997 * 120.00042 * 359.51093 * 6 5 4 8 8 C 1.37878 * 120.00073 * 179.52041 * 6 5 4 9 9 N 1.31512 * 119.99846 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99965 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47395 * 59.99781 * 10 8 6 12 12 H 1.48501 * 109.47164 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47219 * 299.99477 * 10 8 6 14 14 C 1.46894 * 110.99721 * 164.44656 * 4 3 2 15 15 H 1.08999 * 109.67480 * 304.84988 * 14 4 3 16 16 C 1.53355 * 109.67108 * 184.35174 * 14 4 3 17 17 C 1.52920 * 108.67073 * 172.73752 * 16 14 4 18 18 N 1.45752 * 110.49260 * 50.75483 * 17 16 14 19 19 C 1.46500 * 117.94768 * 160.64177 * 18 17 16 20 20 C 1.53005 * 117.49732 * 3.92912 * 19 18 17 21 21 C 1.53001 * 117.49712 * 295.30902 * 19 18 17 22 22 C 1.33349 * 124.10324 * 340.91576 * 18 17 16 23 23 O 1.21282 * 118.24337 * 182.22771 * 22 18 17 24 24 C 1.50179 * 123.51177 * 2.23456 * 22 18 17 25 25 H 1.09001 * 109.46832 * 60.00372 * 1 2 3 26 26 H 1.09002 * 109.46522 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46854 * 299.99969 * 1 2 3 28 28 H 1.09003 * 109.47160 * 240.00373 * 2 1 3 29 29 H 1.08997 * 109.47312 * 119.99605 * 2 1 3 30 30 H 1.08996 * 109.46665 * 65.19122 * 3 2 1 31 31 H 1.09003 * 109.46744 * 305.19322 * 3 2 1 32 32 H 1.08997 * 109.47534 * 280.26752 * 5 4 3 33 33 H 1.08999 * 109.47762 * 40.27440 * 5 4 3 34 34 H 0.97007 * 120.00038 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.60015 * 52.97966 * 16 14 4 36 36 H 1.09000 * 109.60342 * 292.49151 * 16 14 4 37 37 H 1.08998 * 109.30176 * 290.43569 * 17 16 14 38 38 H 1.09009 * 109.29684 * 171.06792 * 17 16 14 39 39 H 1.08993 * 115.55093 * 149.63447 * 19 18 17 40 40 H 1.09002 * 117.49762 * 359.97438 * 20 19 18 41 41 H 1.09000 * 117.49499 * 145.02367 * 20 19 18 42 42 H 1.09000 * 117.49444 * 214.98197 * 21 19 18 43 43 H 1.09006 * 117.49580 * 359.97438 * 21 19 18 44 44 H 1.09001 * 109.40070 * 222.28301 * 24 22 18 45 45 H 1.09004 * 109.33211 * 102.49474 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4445 -0.1254 5 6 4.1386 0.9733 1.1126 6 6 5.5477 0.5284 0.8165 7 1 5.9304 0.5822 -0.1920 8 6 6.3484 0.0525 1.8331 9 7 5.8826 -0.0128 3.0612 10 14 8.0947 -0.4997 1.4660 11 1 8.8661 0.6384 0.9047 12 1 8.7408 -0.9645 2.7197 13 1 8.0659 -1.6114 0.4818 14 6 3.9984 2.7769 -0.4967 15 1 3.5023 3.1118 -1.4076 16 6 5.5137 2.7197 -0.7252 17 6 5.9757 4.0661 -1.2841 18 7 5.4787 5.1591 -0.4579 19 6 6.1480 6.4581 -0.5625 20 6 7.2631 6.5966 -1.6010 21 6 7.6078 6.5389 -0.1115 22 6 4.4563 5.0495 0.3912 23 8 4.1046 6.0395 0.9970 24 6 3.7171 3.7656 0.6375 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7546 1.9288 0.9328 31 1 1.6027 1.9825 -0.8399 32 1 4.1591 1.7833 1.8416 33 1 3.5703 0.1353 1.5163 34 1 6.4460 -0.3473 3.7766 35 1 5.7464 1.9286 -1.4379 36 1 6.0190 2.5235 0.2205 37 1 5.5992 4.1826 -2.3003 38 1 7.0653 4.0942 -1.3015 39 1 5.5167 7.3281 -0.3824 40 1 7.4989 5.7211 -2.2061 41 1 7.3653 7.5580 -2.1044 42 1 7.9369 7.4623 0.3651 43 1 8.0700 5.6257 0.2635 44 1 2.6470 3.9673 0.6849 45 1 4.0467 3.3352 1.5832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172022263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:21 Heat of formation + Delta-G solvation = -18.751514 kcal Electronic energy + Delta-G solvation = -23445.725236 eV Core-core repulsion = 20270.389473 eV Total energy + Delta-G solvation = -3175.335763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81688 -39.37491 -38.30236 -36.08221 -34.88330 -33.92465 -31.52753 -30.74990 -29.16668 -26.57815 -25.48335 -24.22102 -23.33423 -23.07634 -21.93525 -20.99761 -19.48995 -18.62209 -17.97515 -17.45016 -16.87574 -16.58384 -16.24878 -15.91942 -15.51265 -15.36184 -15.06624 -14.84500 -14.60257 -14.15177 -13.93340 -13.49963 -13.32435 -13.12578 -13.04013 -12.82414 -12.57558 -12.51900 -12.40983 -12.35950 -12.02672 -12.00645 -11.83696 -11.63323 -11.46822 -11.35027 -11.23330 -11.03409 -10.78223 -10.46706 -9.52359 -8.95562 -8.10478 -6.13828 1.44445 1.46268 1.49726 1.52901 1.92384 2.44963 2.89260 3.19460 3.22607 3.65318 3.75939 3.84811 3.88088 4.01107 4.04299 4.11281 4.16827 4.31563 4.44748 4.51522 4.53390 4.60265 4.71220 4.74798 4.76542 4.77702 4.87297 4.95078 5.00532 5.05697 5.17237 5.19291 5.22261 5.31863 5.35934 5.47199 5.50643 5.52716 5.69359 5.78958 6.17812 6.39346 6.44446 6.68166 6.97861 7.08046 7.50533 9.00029 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.007316 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.402094 B = 3826.152101 C = 5585.413749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.054 3.946 4 N -0.528 5.528 5 C 0.197 3.803 6 C -0.499 4.499 7 H 0.083 0.917 8 C -0.002 4.002 9 N -0.940 5.940 10 Si 0.953 3.047 11 H -0.263 1.263 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.102 3.898 15 H 0.097 0.903 16 C -0.124 4.124 17 C 0.111 3.889 18 N -0.569 5.569 19 C 0.042 3.958 20 C -0.149 4.149 21 C -0.198 4.198 22 C 0.526 3.474 23 O -0.603 6.603 24 C -0.163 4.163 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.014 0.986 31 H 0.086 0.914 32 H -0.025 1.025 33 H 0.003 0.997 34 H 0.258 0.742 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 8.074 -12.639 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.074 4.074 4 N -0.251 5.251 5 C 0.071 3.929 6 C -0.537 4.537 7 H 0.101 0.899 8 C -0.199 4.199 9 N -0.582 5.582 10 Si 0.779 3.221 11 H -0.188 1.188 12 H -0.223 1.223 13 H -0.193 1.193 14 C -0.007 4.007 15 H 0.115 0.885 16 C -0.162 4.162 17 C -0.011 4.011 18 N -0.298 5.298 19 C -0.062 4.062 20 C -0.186 4.186 21 C -0.237 4.237 22 C 0.315 3.685 23 O -0.486 6.486 24 C -0.204 4.204 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.104 0.896 32 H -0.007 1.007 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.975 8.131 -12.569 15.002 hybrid contribution 0.584 -0.061 1.636 1.738 sum -0.391 8.069 -10.934 13.594 Atomic orbital electron populations 1.21685 0.93917 1.02171 1.02065 1.21452 0.96400 0.96068 1.01358 1.22168 0.88193 0.97465 0.99616 1.62375 1.04818 1.22606 1.35273 1.19582 0.94228 0.93122 0.85955 1.21678 0.97310 1.39548 0.95162 0.89912 1.25812 1.02552 0.96645 0.94927 1.70097 1.38225 1.48721 1.01134 0.85667 0.80141 0.79228 0.77057 1.18757 1.22300 1.19288 1.21719 0.96733 0.86649 0.95626 0.88469 1.22259 0.94938 0.95600 1.03383 1.21769 1.00335 0.84608 0.94404 1.46865 1.31000 1.11577 1.40405 1.21784 0.89559 0.87163 1.07676 1.23491 0.98053 1.05596 0.91507 1.23409 0.97520 1.03860 0.98907 1.20195 0.80027 0.90151 0.78081 1.90615 1.68201 1.39489 1.50263 1.22356 1.00966 0.93673 1.03406 0.91295 0.91958 0.93207 0.91572 0.94723 0.96773 0.89560 1.00739 0.97876 0.93345 0.88551 0.91096 0.88863 0.89241 0.86444 0.86736 0.85519 0.87124 0.89633 0.88771 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.67 16 2 C -0.11 -3.65 5.91 30.60 0.18 -3.47 16 3 C 0.05 1.77 4.29 86.31 0.37 2.14 16 4 N -0.53 -20.36 4.47 -874.69 -3.91 -24.28 16 5 C 0.20 9.67 4.32 85.56 0.37 10.04 16 6 C -0.50 -25.52 6.56 25.60 0.17 -25.35 16 7 H 0.08 3.96 5.54 -2.91 -0.02 3.95 16 8 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 9 N -0.94 -55.53 13.29 21.45 0.28 -55.24 16 10 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 C 0.10 3.42 2.29 45.06 0.10 3.53 16 15 H 0.10 2.76 7.98 -2.39 -0.02 2.74 16 16 C -0.12 -4.06 3.75 30.69 0.12 -3.94 16 17 C 0.11 2.79 5.37 86.49 0.46 3.26 16 18 N -0.57 -17.24 3.14 -802.63 -2.52 -19.76 16 19 C 0.04 1.10 5.97 44.99 0.27 1.37 16 20 C -0.15 -2.56 9.67 30.60 0.30 -2.26 16 21 C -0.20 -4.45 10.17 30.59 0.31 -4.14 16 22 C 0.53 19.69 7.47 87.72 0.66 20.34 16 23 O -0.60 -26.34 16.37 -3.03 -0.05 -26.39 16 24 C -0.16 -6.04 4.72 29.71 0.14 -5.90 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.03 1.30 6.68 -2.39 -0.02 1.29 16 30 H 0.01 0.50 7.48 -2.39 -0.02 0.48 16 31 H 0.09 2.38 7.90 -2.39 -0.02 2.36 16 32 H -0.02 -1.35 5.41 -2.39 -0.01 -1.36 16 33 H 0.00 0.17 6.30 -2.39 -0.02 0.16 16 34 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 35 H 0.10 3.05 7.09 -2.39 -0.02 3.03 16 36 H 0.07 2.94 5.82 -2.39 -0.01 2.93 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 38 H 0.09 2.00 6.55 -2.38 -0.02 1.98 16 39 H 0.12 3.33 7.52 -2.39 -0.02 3.31 16 40 H 0.11 1.71 6.37 -2.39 -0.02 1.70 16 41 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 3.30 7.51 -2.39 -0.02 3.28 16 45 H 0.08 3.67 5.59 -2.38 -0.01 3.66 16 Total: -1.00 -66.15 341.16 1.41 -64.74 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.97 Total: 23.29 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.62 Total: -6.72 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.15 Total: -99.28 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -66.15 1.41 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172022263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.989 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds