Wall clock time and date at job start Tue Mar 31 2020 02:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 N 1.46896 * 109.47041 * 178.53131 * 3 2 1 5 5 C 1.46903 * 111.00051 * 160.55100 * 4 3 2 6 6 C 1.50698 * 109.47022 * 288.92301 * 5 4 3 7 7 H 1.08002 * 120.00159 * 3.39343 * 6 5 4 8 8 C 1.37883 * 120.00059 * 183.39846 * 6 5 4 9 9 N 1.31510 * 119.99613 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00102 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47050 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47097 * 119.99462 * 10 8 6 13 13 H 1.48495 * 109.47186 * 239.99922 * 10 8 6 14 14 C 1.46896 * 111.00148 * 284.50283 * 4 3 2 15 15 H 1.09009 * 109.67058 * 54.50442 * 14 4 3 16 16 C 1.53344 * 109.68002 * 174.99865 * 14 4 3 17 17 C 1.52909 * 108.68119 * 187.26454 * 16 14 4 18 18 N 1.45757 * 110.49008 * 309.24939 * 17 16 14 19 19 C 1.46501 * 117.95016 * 199.07055 * 18 17 16 20 20 C 1.52998 * 117.49675 * 3.08748 * 19 18 17 21 21 C 1.52995 * 59.99964 * 252.51065 * 20 19 18 22 22 C 1.33356 * 124.10269 * 19.05359 * 18 17 16 23 23 O 1.21281 * 118.24392 * 177.80150 * 22 18 17 24 24 C 1.50178 * 123.50746 * 358.07324 * 22 18 17 25 25 H 1.08994 * 109.47528 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47090 * 300.00409 * 1 2 3 27 27 H 1.09008 * 109.47123 * 59.99722 * 1 2 3 28 28 H 1.09004 * 109.47076 * 240.00420 * 2 1 3 29 29 H 1.08996 * 109.47198 * 119.99898 * 2 1 3 30 30 H 1.08995 * 109.47031 * 58.53007 * 3 2 1 31 31 H 1.09006 * 109.47204 * 298.53174 * 3 2 1 32 32 H 1.09001 * 109.46849 * 48.92091 * 5 4 3 33 33 H 1.09003 * 109.46881 * 168.92520 * 5 4 3 34 34 H 0.97003 * 119.99706 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.60069 * 67.50385 * 16 14 4 36 36 H 1.09006 * 109.60148 * 307.03016 * 16 14 4 37 37 H 1.08998 * 109.30419 * 188.93312 * 17 16 14 38 38 H 1.09000 * 109.13183 * 69.45101 * 17 16 14 39 39 H 1.08995 * 115.54481 * 148.79126 * 19 18 17 40 40 H 1.09004 * 117.49834 * 0.02562 * 20 19 18 41 41 H 1.08996 * 117.49834 * 145.01744 * 20 19 18 42 42 H 1.08997 * 117.49838 * 252.51342 * 21 20 19 43 43 H 1.09007 * 117.50007 * 107.49139 * 21 20 19 44 44 H 1.09000 * 109.39785 * 137.43648 * 24 22 18 45 45 H 1.09001 * 109.39944 * 257.17720 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5085 1.4427 0.0355 5 6 4.0460 2.7319 -0.4193 6 6 3.8317 2.8697 -1.9046 7 1 3.2965 2.1038 -2.4463 8 6 4.3190 3.9734 -2.5721 9 7 4.9704 4.9061 -1.9124 10 14 4.0527 4.1444 -4.4130 11 1 3.2961 2.9694 -4.9150 12 1 3.2829 5.3840 -4.6888 13 1 5.3679 4.2156 -5.0989 14 6 4.0027 1.1106 1.3784 15 1 3.5699 0.1651 1.7053 16 6 5.5317 0.9967 1.3525 17 6 6.0071 0.4752 2.7090 18 7 5.4272 1.2624 3.7900 19 6 6.0723 1.2044 5.1040 20 6 7.3527 0.3759 5.2265 21 6 6.0492 -0.1346 5.8438 22 6 4.3465 2.0324 3.6577 23 8 3.9305 2.6110 4.6390 24 6 3.6136 2.2167 2.3599 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6553 1.9639 0.8765 31 1 1.6983 1.9487 -0.9029 32 1 3.5331 3.5424 0.0985 33 1 5.1128 2.7784 -0.2003 34 1 5.3129 5.6828 -2.3819 35 1 5.9683 1.9776 1.1643 36 1 5.8335 0.3030 0.5676 37 1 7.0940 0.5398 2.7591 38 1 5.7027 -0.5658 2.8181 39 1 6.0003 2.1119 5.7034 40 1 7.7154 -0.1256 4.3292 41 1 8.1235 0.7384 5.9065 42 1 5.9625 -0.1081 6.9300 43 1 5.5541 -0.9725 5.3528 44 1 2.5396 2.1802 2.5423 45 1 3.8742 3.1844 1.9312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172022269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:24 Heat of formation + Delta-G solvation = -7.986638 kcal Electronic energy + Delta-G solvation = -23122.678434 eV Core-core repulsion = 19947.809471 eV Total energy + Delta-G solvation = -3174.868963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59621 -37.94865 -37.16107 -34.86646 -33.16717 -32.44533 -30.42470 -29.39021 -27.09206 -25.52263 -23.89431 -22.85777 -22.31637 -21.98738 -21.03751 -19.54299 -18.05711 -17.05330 -16.71222 -16.09930 -15.45776 -15.08794 -14.68250 -14.63196 -14.35999 -14.01719 -13.83776 -13.66744 -13.06991 -12.83490 -12.54988 -12.31688 -12.03556 -11.94691 -11.62332 -11.52751 -11.25628 -11.14224 -11.03434 -10.92381 -10.72460 -10.68397 -10.52143 -10.48991 -10.27979 -10.03468 -9.60490 -9.52743 -9.21926 -8.48584 -8.44225 -7.30704 -6.05936 -4.06748 2.80337 2.98193 3.28899 3.36961 3.41211 3.74432 4.37884 4.57020 4.65200 4.76201 4.84332 4.93203 4.96100 5.09217 5.26937 5.31587 5.40027 5.43592 5.47580 5.55158 5.59826 5.65110 5.74189 5.83769 5.86602 5.91071 5.95487 6.04969 6.13788 6.21535 6.23534 6.37690 6.41380 6.55021 6.55888 6.68719 6.79290 7.21793 7.27908 7.57896 7.77449 8.04361 8.14527 8.34502 8.49109 9.01029 9.57548 11.04712 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.004986 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.134696 B = 5614.452454 C = 6566.477595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.056 3.944 4 N -0.525 5.525 5 C 0.186 3.814 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.086 3.914 15 H 0.075 0.925 16 C -0.128 4.128 17 C 0.112 3.888 18 N -0.578 5.578 19 C 0.077 3.923 20 C -0.187 4.187 21 C -0.191 4.191 22 C 0.530 3.470 23 O -0.560 6.560 24 C -0.171 4.171 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.084 0.916 32 H -0.008 1.008 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -11.055 10.190 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.072 4.072 4 N -0.247 5.247 5 C 0.061 3.939 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.024 4.024 15 H 0.094 0.906 16 C -0.166 4.166 17 C -0.011 4.011 18 N -0.310 5.310 19 C -0.027 4.027 20 C -0.225 4.225 21 C -0.230 4.230 22 C 0.320 3.680 23 O -0.439 6.439 24 C -0.212 4.212 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.009 0.991 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.281 -10.928 10.266 15.049 hybrid contribution -0.281 0.843 -0.472 1.006 sum 1.000 -10.085 9.794 14.094 Atomic orbital electron populations 1.21738 0.96591 1.00838 1.01604 1.21517 0.94421 0.97866 1.01763 1.22100 0.88448 0.95426 1.01223 1.62360 1.07174 1.36101 1.19091 1.19859 0.95534 0.82912 0.95605 1.21180 1.35266 1.05208 0.92692 0.91824 1.24970 0.95322 0.95807 0.98444 1.69957 1.37761 1.10223 1.35848 0.86479 0.77868 0.77939 0.85366 1.19663 1.21167 1.21072 1.21738 0.94905 0.96477 0.89298 0.90648 1.21992 0.95809 1.03770 0.95003 1.21530 0.98518 0.94545 0.86494 1.46850 1.28224 1.46262 1.09643 1.21635 0.97768 0.96281 0.87048 1.23356 0.91548 1.03940 1.03622 1.23325 1.00722 0.98678 1.00274 1.20255 0.79468 0.77353 0.90974 1.90661 1.65803 1.47906 1.39542 1.22453 1.01226 1.04341 0.93185 0.93308 0.93266 0.92695 0.91482 0.93037 0.95812 0.89737 0.99072 0.94380 0.92975 0.90051 0.88702 0.90357 0.91988 0.85294 0.87942 0.87954 0.88299 0.88658 0.88613 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.75 6.06 -26.73 -0.16 -1.91 16 3 C 0.06 1.01 4.70 -3.82 -0.02 0.99 16 4 N -0.52 -10.20 4.38 -227.93 -1.00 -11.20 16 5 C 0.19 4.45 3.66 -4.98 -0.02 4.43 16 6 C -0.50 -13.47 8.38 -34.44 -0.29 -13.76 16 7 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 10 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.09 1.40 2.20 -67.59 -0.15 1.25 16 15 H 0.08 1.14 6.69 -51.92 -0.35 0.79 16 16 C -0.13 -1.89 4.93 -26.60 -0.13 -2.02 16 17 C 0.11 1.35 5.53 -4.49 -0.02 1.32 16 18 N -0.58 -8.26 3.14 -167.38 -0.53 -8.78 16 19 C 0.08 0.97 5.92 -67.93 -0.40 0.57 16 20 C -0.19 -1.71 9.66 -26.73 -0.26 -1.97 16 21 C -0.19 -1.91 10.36 -26.74 -0.28 -2.19 16 22 C 0.53 9.20 7.47 -11.87 -0.09 9.11 16 23 O -0.56 -11.39 16.41 5.56 0.09 -11.30 16 24 C -0.17 -2.95 4.71 -28.18 -0.13 -3.08 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.72 6.79 -51.93 -0.35 0.37 16 30 H 0.02 0.42 6.18 -51.93 -0.32 0.10 16 31 H 0.08 1.71 6.91 -51.93 -0.36 1.35 16 32 H -0.01 -0.22 6.85 -51.93 -0.36 -0.57 16 33 H 0.04 0.97 5.87 -51.93 -0.30 0.66 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.08 1.40 6.54 -51.92 -0.34 1.06 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 0.81 6.40 -51.93 -0.33 0.48 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 1.76 7.60 -51.93 -0.39 1.37 16 40 H 0.10 0.86 6.18 -51.93 -0.32 0.54 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.63 6.82 -51.93 -0.35 1.28 16 45 H 0.11 2.18 6.14 -51.93 -0.32 1.87 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -30.26 345.12 -9.63 -39.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.44 Total: 2.63 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.68 Total: -7.38 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.79 Total: -45.14 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.26 -9.63 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172022269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.907 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds