Wall clock time and date at job start Tue Mar 31 2020 02:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 N 1.46896 * 109.47041 * 178.53131 * 3 2 1 5 5 C 1.46903 * 111.00051 * 160.55100 * 4 3 2 6 6 C 1.50698 * 109.47022 * 288.92301 * 5 4 3 7 7 H 1.08002 * 120.00159 * 3.39343 * 6 5 4 8 8 C 1.37883 * 120.00059 * 183.39846 * 6 5 4 9 9 N 1.31510 * 119.99613 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00102 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47050 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47097 * 119.99462 * 10 8 6 13 13 H 1.48495 * 109.47186 * 239.99922 * 10 8 6 14 14 C 1.46896 * 111.00148 * 284.50283 * 4 3 2 15 15 H 1.09009 * 109.67058 * 54.50442 * 14 4 3 16 16 C 1.53344 * 109.68002 * 174.99865 * 14 4 3 17 17 C 1.52909 * 108.68119 * 187.26454 * 16 14 4 18 18 N 1.45757 * 110.49008 * 309.24939 * 17 16 14 19 19 C 1.46501 * 117.95016 * 199.07055 * 18 17 16 20 20 C 1.52998 * 117.49675 * 3.08748 * 19 18 17 21 21 C 1.52995 * 59.99964 * 252.51065 * 20 19 18 22 22 C 1.33356 * 124.10269 * 19.05359 * 18 17 16 23 23 O 1.21281 * 118.24392 * 177.80150 * 22 18 17 24 24 C 1.50178 * 123.50746 * 358.07324 * 22 18 17 25 25 H 1.08994 * 109.47528 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47090 * 300.00409 * 1 2 3 27 27 H 1.09008 * 109.47123 * 59.99722 * 1 2 3 28 28 H 1.09004 * 109.47076 * 240.00420 * 2 1 3 29 29 H 1.08996 * 109.47198 * 119.99898 * 2 1 3 30 30 H 1.08995 * 109.47031 * 58.53007 * 3 2 1 31 31 H 1.09006 * 109.47204 * 298.53174 * 3 2 1 32 32 H 1.09001 * 109.46849 * 48.92091 * 5 4 3 33 33 H 1.09003 * 109.46881 * 168.92520 * 5 4 3 34 34 H 0.97003 * 119.99706 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.60069 * 67.50385 * 16 14 4 36 36 H 1.09006 * 109.60148 * 307.03016 * 16 14 4 37 37 H 1.08998 * 109.30419 * 188.93312 * 17 16 14 38 38 H 1.09000 * 109.13183 * 69.45101 * 17 16 14 39 39 H 1.08995 * 115.54481 * 148.79126 * 19 18 17 40 40 H 1.09004 * 117.49834 * 0.02562 * 20 19 18 41 41 H 1.08996 * 117.49834 * 145.01744 * 20 19 18 42 42 H 1.08997 * 117.49838 * 252.51342 * 21 20 19 43 43 H 1.09007 * 117.50007 * 107.49139 * 21 20 19 44 44 H 1.09000 * 109.39785 * 137.43648 * 24 22 18 45 45 H 1.09001 * 109.39944 * 257.17720 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5085 1.4427 0.0355 5 6 4.0460 2.7319 -0.4193 6 6 3.8317 2.8697 -1.9046 7 1 3.2965 2.1038 -2.4463 8 6 4.3190 3.9734 -2.5721 9 7 4.9704 4.9061 -1.9124 10 14 4.0527 4.1444 -4.4130 11 1 3.2961 2.9694 -4.9150 12 1 3.2829 5.3840 -4.6888 13 1 5.3679 4.2156 -5.0989 14 6 4.0027 1.1106 1.3784 15 1 3.5699 0.1651 1.7053 16 6 5.5317 0.9967 1.3525 17 6 6.0071 0.4752 2.7090 18 7 5.4272 1.2624 3.7900 19 6 6.0723 1.2044 5.1040 20 6 7.3527 0.3759 5.2265 21 6 6.0492 -0.1346 5.8438 22 6 4.3465 2.0324 3.6577 23 8 3.9305 2.6110 4.6390 24 6 3.6136 2.2167 2.3599 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6553 1.9639 0.8765 31 1 1.6983 1.9487 -0.9029 32 1 3.5331 3.5424 0.0985 33 1 5.1128 2.7784 -0.2003 34 1 5.3129 5.6828 -2.3819 35 1 5.9683 1.9776 1.1643 36 1 5.8335 0.3030 0.5676 37 1 7.0940 0.5398 2.7591 38 1 5.7027 -0.5658 2.8181 39 1 6.0003 2.1119 5.7034 40 1 7.7154 -0.1256 4.3292 41 1 8.1235 0.7384 5.9065 42 1 5.9625 -0.1081 6.9300 43 1 5.5541 -0.9725 5.3528 44 1 2.5396 2.1802 2.5423 45 1 3.8742 3.1844 1.9312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172022269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:23 Heat of formation + Delta-G solvation = -26.738241 kcal Electronic energy + Delta-G solvation = -23123.491565 eV Core-core repulsion = 19947.809471 eV Total energy + Delta-G solvation = -3175.682094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86329 -39.37184 -38.31834 -36.08203 -34.94884 -33.90412 -31.83380 -30.74240 -28.90083 -26.85614 -25.39210 -24.20474 -23.33254 -23.07829 -22.32949 -20.94361 -19.42651 -18.47643 -18.16849 -17.53290 -16.80047 -16.69918 -16.20745 -15.87118 -15.62344 -15.30401 -15.15455 -15.09053 -14.46033 -14.27676 -13.92066 -13.67349 -13.54129 -13.28151 -12.90067 -12.75314 -12.69791 -12.51767 -12.41027 -12.27943 -12.20358 -11.99473 -11.88015 -11.77356 -11.52129 -11.41810 -11.18737 -11.07955 -10.96254 -10.55221 -9.56185 -8.97389 -8.17273 -6.25575 1.41309 1.42771 1.45026 1.55339 1.85709 2.41964 2.90184 3.12530 3.19536 3.58228 3.70654 3.72543 3.80239 3.94879 4.03805 4.06570 4.22414 4.28120 4.36164 4.41764 4.51643 4.55332 4.64852 4.72497 4.74384 4.80343 4.91615 4.95961 5.01813 5.04943 5.08399 5.21062 5.22033 5.22621 5.31083 5.34283 5.45102 5.48790 5.54479 5.69947 6.11171 6.34594 6.39400 6.65750 6.91061 7.03291 7.43614 8.93339 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.004986 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.134696 B = 5614.452454 C = 6566.477595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.056 3.944 4 N -0.525 5.525 5 C 0.204 3.796 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.279 1.279 14 C 0.089 3.911 15 H 0.102 0.898 16 C -0.124 4.124 17 C 0.115 3.885 18 N -0.570 5.570 19 C 0.036 3.964 20 C -0.159 4.159 21 C -0.179 4.179 22 C 0.526 3.474 23 O -0.600 6.600 24 C -0.162 4.162 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.056 0.944 32 H -0.042 1.042 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -14.008 10.286 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.072 4.072 4 N -0.247 5.247 5 C 0.078 3.922 6 C -0.554 4.554 7 H 0.080 0.920 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.205 1.205 14 C -0.020 4.020 15 H 0.119 0.881 16 C -0.162 4.162 17 C -0.007 4.007 18 N -0.300 5.300 19 C -0.068 4.068 20 C -0.196 4.196 21 C -0.217 4.217 22 C 0.315 3.685 23 O -0.482 6.482 24 C -0.204 4.204 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.074 0.926 32 H -0.024 1.024 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.883 -13.931 10.361 17.463 hybrid contribution -0.444 1.752 -0.443 1.861 sum 1.438 -12.179 9.918 15.772 Atomic orbital electron populations 1.21714 0.94823 1.02322 1.01554 1.21431 0.95890 0.94994 1.02206 1.22130 0.87547 0.97803 0.99762 1.62327 1.08114 1.32982 1.21269 1.19458 0.94234 0.84205 0.94281 1.21508 1.34753 1.05109 0.94032 0.92019 1.25819 0.95066 0.95490 1.03075 1.70086 1.38939 1.10860 1.37721 0.85433 0.77927 0.78043 0.79822 1.18670 1.20963 1.20499 1.21866 0.96199 0.96777 0.87187 0.88061 1.21930 0.94352 1.02496 0.97406 1.21703 0.99821 0.95295 0.83867 1.46864 1.26902 1.45069 1.11139 1.21765 1.01371 0.97198 0.86512 1.23499 0.90756 1.01251 1.04130 1.23398 1.00977 0.96527 1.00802 1.20139 0.80391 0.77857 0.90132 1.90632 1.67279 1.49782 1.40494 1.22295 1.01290 1.03037 0.93744 0.91003 0.92931 0.93237 0.91912 0.91558 0.95924 0.92564 1.02411 0.96143 0.92915 0.93251 0.87694 0.87847 0.88803 0.87470 0.86424 0.86233 0.87249 0.88067 0.88820 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.01 6.06 30.59 0.19 -2.83 16 3 C 0.06 2.03 4.70 86.30 0.41 2.43 16 4 N -0.52 -20.75 4.38 -875.02 -3.84 -24.59 16 5 C 0.20 10.29 3.66 85.56 0.31 10.60 16 6 C -0.52 -28.29 8.38 25.60 0.21 -28.07 16 7 H 0.06 3.34 7.53 -2.91 -0.02 3.32 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.94 -55.65 13.29 21.45 0.28 -55.36 16 10 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.09 2.88 2.20 45.00 0.10 2.98 16 15 H 0.10 2.81 6.69 -2.38 -0.02 2.79 16 16 C -0.12 -3.57 4.93 30.68 0.15 -3.42 16 17 C 0.11 2.46 5.53 86.49 0.48 2.93 16 18 N -0.57 -15.69 3.14 -802.66 -2.52 -18.21 16 19 C 0.04 0.84 5.92 44.99 0.27 1.11 16 20 C -0.16 -2.34 9.66 30.59 0.30 -2.05 16 21 C -0.18 -3.03 10.36 30.59 0.32 -2.71 16 22 C 0.53 18.66 7.47 87.71 0.66 19.32 16 23 O -0.60 -25.35 16.41 -3.03 -0.05 -25.40 16 24 C -0.16 -5.85 4.71 29.65 0.14 -5.71 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.07 1.67 6.79 -2.39 -0.02 1.66 16 30 H 0.02 0.82 6.18 -2.39 -0.01 0.81 16 31 H 0.06 2.35 6.91 -2.38 -0.02 2.34 16 32 H -0.04 -2.34 6.85 -2.39 -0.02 -2.36 16 33 H 0.02 1.10 5.87 -2.39 -0.01 1.09 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.05 1.75 6.54 -2.38 -0.02 1.73 16 36 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 37 H 0.10 1.77 6.40 -2.39 -0.02 1.75 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.11 2.98 7.60 -2.39 -0.02 2.97 16 40 H 0.12 1.41 6.18 -2.38 -0.01 1.40 16 41 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.09 3.34 6.82 -2.39 -0.02 3.32 16 45 H 0.08 3.32 6.14 -2.39 -0.01 3.31 16 Total: -1.00 -68.73 345.12 1.57 -67.17 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.97 Total: 18.08 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.70 Total: -7.51 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -6.07 Total: -98.16 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.73 1.57 -67.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172022269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.427 kcal (2) G-P(sol) polarization free energy of solvation -68.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds