Wall clock time and date at job start Tue Mar 31 2020 02:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47050 * 2 1 4 4 N 1.46904 * 109.46879 * 185.18119 * 3 2 1 5 5 C 1.46897 * 111.00270 * 296.20758 * 4 3 2 6 6 C 1.50703 * 109.47096 * 295.39598 * 5 4 3 7 7 H 1.07998 * 120.00070 * 354.95780 * 6 5 4 8 8 C 1.37877 * 119.99728 * 174.95599 * 6 5 4 9 9 N 1.31515 * 120.00319 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99869 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47058 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47140 * 120.00197 * 10 8 6 13 13 H 1.48501 * 109.47213 * 239.99915 * 10 8 6 14 14 C 1.46905 * 110.99513 * 172.25670 * 4 3 2 15 15 H 1.08997 * 109.17670 * 57.28320 * 14 4 3 16 16 C 1.52821 * 109.21677 * 297.92826 * 14 4 3 17 17 C 1.53743 * 109.84196 * 178.16091 * 16 14 4 18 18 N 1.47375 * 106.62421 * 52.80590 * 17 16 14 19 19 C 1.33695 * 127.21066 * 122.01806 * 18 17 16 20 20 O 1.21283 * 125.30801 * 19.34340 * 19 18 17 21 21 C 1.51457 * 109.38150 * 199.31829 * 19 18 17 22 22 C 1.56082 * 104.29465 * 336.63070 * 21 19 18 23 23 C 1.47479 * 121.23418 * 305.91164 * 18 17 16 24 24 H 1.09005 * 110.30388 * 295.44450 * 23 18 17 25 25 C 1.53050 * 107.26697 * 55.56735 * 23 18 17 26 26 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46715 * 299.99380 * 1 2 3 28 28 H 1.08993 * 109.47709 * 59.99254 * 1 2 3 29 29 H 1.09002 * 109.47223 * 240.00738 * 2 1 3 30 30 H 1.08993 * 109.47709 * 120.00746 * 2 1 3 31 31 H 1.09003 * 109.46878 * 65.18701 * 3 2 1 32 32 H 1.08997 * 109.47479 * 305.18368 * 3 2 1 33 33 H 1.08998 * 109.47126 * 55.39472 * 5 4 3 34 34 H 1.09000 * 109.47551 * 175.39514 * 5 4 3 35 35 H 0.97002 * 119.99902 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.39281 * 298.24794 * 16 14 4 37 37 H 1.08993 * 109.40136 * 58.06754 * 16 14 4 38 38 H 1.08995 * 110.03991 * 171.98475 * 17 16 14 39 39 H 1.08995 * 110.03381 * 293.48394 * 17 16 14 40 40 H 1.08996 * 110.48029 * 95.51027 * 21 19 18 41 41 H 1.09002 * 110.47869 * 218.01076 * 21 19 18 42 42 H 1.09004 * 111.00576 * 262.76144 * 22 21 19 43 43 H 1.09006 * 111.09517 * 139.03757 * 22 21 19 44 44 H 1.09001 * 109.63393 * 185.75933 * 25 23 18 45 45 H 1.08991 * 109.63361 * 65.15964 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 -0.1251 5 6 4.1322 0.8027 1.0372 6 6 3.8467 1.6142 2.2746 7 1 3.3276 2.5578 2.1936 8 6 4.2482 1.1520 3.5100 9 7 4.8808 0.0032 3.6085 10 14 3.8949 2.1582 5.0436 11 1 3.1771 3.4019 4.6652 12 1 3.0521 1.3642 5.9734 13 1 5.1742 2.5082 5.7117 14 6 4.0142 2.8090 -0.3130 15 1 3.6922 3.4300 0.5229 16 6 3.4500 3.3826 -1.6123 17 6 3.9388 4.8281 -1.8002 18 7 5.4069 4.7963 -1.6756 19 6 6.3041 5.1964 -2.5824 20 8 6.0780 5.9452 -3.5093 21 6 7.6472 4.5692 -2.2713 22 6 7.5738 4.2371 -0.7480 23 6 6.0614 4.2077 -0.4923 24 1 5.8180 4.7840 0.4004 25 6 5.5458 2.7733 -0.3544 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.7545 1.9288 0.9328 32 1 1.6029 1.9825 -0.8399 33 1 3.7279 -0.2020 1.1604 34 1 5.2095 0.7442 0.8817 35 1 5.1629 -0.3221 4.4777 36 1 3.7861 2.7748 -2.4523 37 1 2.3609 3.3714 -1.5702 38 1 3.6576 5.1920 -2.7884 39 1 3.5121 5.4697 -1.0293 40 1 7.7881 3.6601 -2.8558 41 1 8.4530 5.2766 -2.4674 42 1 8.0498 5.0178 -0.1545 43 1 8.0194 3.2650 -0.5364 44 1 5.9268 2.3342 0.5676 45 1 5.8753 2.1820 -1.2086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172188918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:11 Heat of formation + Delta-G solvation = -37.898204 kcal Electronic energy + Delta-G solvation = -23503.819490 eV Core-core repulsion = 20327.653464 eV Total energy + Delta-G solvation = -3176.166026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62010 -38.08530 -36.39639 -34.00546 -33.08973 -32.35148 -30.43805 -29.30718 -26.95161 -26.31074 -24.27088 -23.58360 -21.98287 -21.18270 -20.49506 -19.35348 -18.91741 -16.49939 -16.26385 -15.70364 -15.48279 -15.13107 -14.83604 -14.46365 -14.16616 -13.82122 -13.68668 -13.22882 -13.06200 -12.59865 -12.42846 -12.40235 -12.25535 -12.02966 -11.77148 -11.35755 -11.30202 -11.11994 -11.02933 -10.89903 -10.73614 -10.58218 -10.49334 -10.04330 -10.00969 -9.88584 -9.77456 -9.59905 -9.37131 -8.46873 -8.45640 -7.20044 -6.08483 -4.17467 2.68706 3.18281 3.20303 3.29814 3.31950 4.34585 4.44971 4.57857 4.74168 4.96208 5.04167 5.18908 5.23116 5.34056 5.44140 5.55379 5.58832 5.59701 5.69637 5.72148 5.78934 5.85703 5.90299 5.95660 6.03584 6.15161 6.22819 6.23015 6.33375 6.34542 6.42192 6.52636 6.62092 6.80193 6.87853 6.92348 6.95300 7.24256 7.38048 7.50694 7.85885 8.03558 8.23914 8.28061 8.32172 8.93508 9.49647 10.95909 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.006111 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.525810 B = 4580.851308 C = 5797.311940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.062 3.938 4 N -0.539 5.539 5 C 0.181 3.819 6 C -0.544 4.544 7 H 0.055 0.945 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.883 3.117 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.097 3.903 15 H 0.045 0.955 16 C -0.132 4.132 17 C 0.130 3.870 18 N -0.614 5.614 19 C 0.521 3.479 20 O -0.547 6.547 21 C -0.155 4.155 22 C -0.123 4.123 23 C 0.127 3.873 24 H 0.083 0.917 25 C -0.117 4.117 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 5.102 -7.709 9.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.067 4.067 4 N -0.263 5.263 5 C 0.056 3.944 6 C -0.583 4.583 7 H 0.073 0.927 8 C -0.136 4.136 9 N -0.528 5.528 10 Si 0.711 3.289 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.012 4.012 15 H 0.062 0.938 16 C -0.170 4.170 17 C 0.008 3.992 18 N -0.348 5.348 19 C 0.309 3.691 20 O -0.425 6.425 21 C -0.195 4.195 22 C -0.161 4.161 23 C 0.023 3.977 24 H 0.101 0.899 25 C -0.156 4.156 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.516 5.122 -8.496 9.934 hybrid contribution -0.485 0.866 1.901 2.145 sum 0.031 5.988 -6.595 8.908 Atomic orbital electron populations 1.21719 0.96920 1.00786 1.01009 1.21471 0.94022 0.97584 1.02490 1.21952 0.89286 0.96248 0.99188 1.62580 1.04531 1.16086 1.43083 1.19861 0.94926 0.94912 0.84711 1.21731 1.37700 1.06288 0.92623 0.92672 1.24921 0.94999 0.94815 0.98825 1.69943 1.39059 1.19348 1.24456 0.86685 0.78088 0.80428 0.83694 1.19949 1.21011 1.20960 1.21254 0.93889 0.91342 0.94746 0.93753 1.22160 1.00673 0.94568 0.99597 1.21776 0.77817 0.97436 1.02146 1.48643 1.06249 1.60377 1.19499 1.20687 0.87460 0.79782 0.81159 1.90684 1.83448 1.35544 1.32855 1.22626 0.96396 1.02608 0.97847 1.22588 0.94993 1.03856 0.94702 1.21847 0.92096 0.95703 0.88035 0.89860 1.22086 0.95715 0.93908 1.03859 0.93342 0.93081 0.93539 0.92364 0.91068 0.94316 0.93063 0.94470 0.95058 0.92886 0.91285 0.90943 0.89862 0.91359 0.87889 0.88701 0.90066 0.88788 0.88477 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.03 5.67 -26.73 -0.15 -2.18 16 3 C 0.06 1.12 4.59 -3.82 -0.02 1.10 16 4 N -0.54 -10.48 4.60 -228.03 -1.05 -11.53 16 5 C 0.18 4.23 4.37 -4.98 -0.02 4.21 16 6 C -0.54 -13.70 7.43 -34.44 -0.26 -13.96 16 7 H 0.06 1.40 5.87 -52.49 -0.31 1.10 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -24.67 13.29 55.43 0.74 -23.94 16 10 Si 0.88 20.42 29.54 -169.99 -5.02 15.39 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.10 1.67 1.41 -67.67 -0.10 1.57 16 15 H 0.04 0.86 6.56 -51.93 -0.34 0.52 16 16 C -0.13 -1.92 5.24 -26.44 -0.14 -2.06 16 17 C 0.13 1.78 6.94 -3.18 -0.02 1.76 16 18 N -0.61 -8.83 2.93 -163.94 -0.48 -9.31 16 19 C 0.52 7.87 8.03 -11.10 -0.09 7.79 16 20 O -0.55 -10.15 17.79 5.56 0.10 -10.06 16 21 C -0.15 -1.74 6.96 -25.86 -0.18 -1.92 16 22 C -0.12 -1.35 6.82 -24.86 -0.17 -1.52 16 23 C 0.13 1.73 3.54 -67.15 -0.24 1.50 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 C -0.12 -1.89 4.21 -26.57 -0.11 -2.00 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.42 6.66 -51.93 -0.35 1.08 16 31 H 0.04 0.79 6.76 -51.93 -0.35 0.44 16 32 H 0.05 0.83 5.93 -51.93 -0.31 0.52 16 33 H 0.04 0.96 6.30 -51.93 -0.33 0.63 16 34 H 0.03 0.77 6.18 -51.93 -0.32 0.45 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 38 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.96 7.82 -51.93 -0.41 0.56 16 44 H 0.10 1.81 6.07 -51.93 -0.32 1.49 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -28.99 340.16 -9.35 -38.33 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.54 Total: 1.73 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.22 Total: -5.76 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.79 Total: -44.77 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.10 Total: -10.06 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.99 -9.35 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172188918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.435 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds