Wall clock time and date at job start Tue Mar 31 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47050 * 2 1 4 4 N 1.46904 * 109.46879 * 185.18119 * 3 2 1 5 5 C 1.46897 * 111.00270 * 296.20758 * 4 3 2 6 6 C 1.50703 * 109.47096 * 295.39598 * 5 4 3 7 7 H 1.07998 * 120.00070 * 354.95780 * 6 5 4 8 8 C 1.37877 * 119.99728 * 174.95599 * 6 5 4 9 9 N 1.31515 * 120.00319 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99869 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47058 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47140 * 120.00197 * 10 8 6 13 13 H 1.48501 * 109.47213 * 239.99915 * 10 8 6 14 14 C 1.46905 * 110.99513 * 172.25670 * 4 3 2 15 15 H 1.08997 * 109.17670 * 57.28320 * 14 4 3 16 16 C 1.52821 * 109.21677 * 297.92826 * 14 4 3 17 17 C 1.53743 * 109.84196 * 178.16091 * 16 14 4 18 18 N 1.47375 * 106.62421 * 52.80590 * 17 16 14 19 19 C 1.33695 * 127.21066 * 122.01806 * 18 17 16 20 20 O 1.21283 * 125.30801 * 19.34340 * 19 18 17 21 21 C 1.51457 * 109.38150 * 199.31829 * 19 18 17 22 22 C 1.56082 * 104.29465 * 336.63070 * 21 19 18 23 23 C 1.47479 * 121.23418 * 305.91164 * 18 17 16 24 24 H 1.09005 * 110.30388 * 295.44450 * 23 18 17 25 25 C 1.53050 * 107.26697 * 55.56735 * 23 18 17 26 26 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46715 * 299.99380 * 1 2 3 28 28 H 1.08993 * 109.47709 * 59.99254 * 1 2 3 29 29 H 1.09002 * 109.47223 * 240.00738 * 2 1 3 30 30 H 1.08993 * 109.47709 * 120.00746 * 2 1 3 31 31 H 1.09003 * 109.46878 * 65.18701 * 3 2 1 32 32 H 1.08997 * 109.47479 * 305.18368 * 3 2 1 33 33 H 1.08998 * 109.47126 * 55.39472 * 5 4 3 34 34 H 1.09000 * 109.47551 * 175.39514 * 5 4 3 35 35 H 0.97002 * 119.99902 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.39281 * 298.24794 * 16 14 4 37 37 H 1.08993 * 109.40136 * 58.06754 * 16 14 4 38 38 H 1.08995 * 110.03991 * 171.98475 * 17 16 14 39 39 H 1.08995 * 110.03381 * 293.48394 * 17 16 14 40 40 H 1.08996 * 110.48029 * 95.51027 * 21 19 18 41 41 H 1.09002 * 110.47869 * 218.01076 * 21 19 18 42 42 H 1.09004 * 111.00576 * 262.76144 * 22 21 19 43 43 H 1.09006 * 111.09517 * 139.03757 * 22 21 19 44 44 H 1.09001 * 109.63393 * 185.75933 * 25 23 18 45 45 H 1.08991 * 109.63361 * 65.15964 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 -0.1251 5 6 4.1322 0.8027 1.0372 6 6 3.8467 1.6142 2.2746 7 1 3.3276 2.5578 2.1936 8 6 4.2482 1.1520 3.5100 9 7 4.8808 0.0032 3.6085 10 14 3.8949 2.1582 5.0436 11 1 3.1771 3.4019 4.6652 12 1 3.0521 1.3642 5.9734 13 1 5.1742 2.5082 5.7117 14 6 4.0142 2.8090 -0.3130 15 1 3.6922 3.4300 0.5229 16 6 3.4500 3.3826 -1.6123 17 6 3.9388 4.8281 -1.8002 18 7 5.4069 4.7963 -1.6756 19 6 6.3041 5.1964 -2.5824 20 8 6.0780 5.9452 -3.5093 21 6 7.6472 4.5692 -2.2713 22 6 7.5738 4.2371 -0.7480 23 6 6.0614 4.2077 -0.4923 24 1 5.8180 4.7840 0.4004 25 6 5.5458 2.7733 -0.3544 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.7545 1.9288 0.9328 32 1 1.6029 1.9825 -0.8399 33 1 3.7279 -0.2020 1.1604 34 1 5.2095 0.7442 0.8817 35 1 5.1629 -0.3221 4.4777 36 1 3.7861 2.7748 -2.4523 37 1 2.3609 3.3714 -1.5702 38 1 3.6576 5.1920 -2.7884 39 1 3.5121 5.4697 -1.0293 40 1 7.7881 3.6601 -2.8558 41 1 8.4530 5.2766 -2.4674 42 1 8.0498 5.0178 -0.1545 43 1 8.0194 3.2650 -0.5364 44 1 5.9268 2.3342 0.5676 45 1 5.8753 2.1820 -1.2086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172188918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:10 Heat of formation + Delta-G solvation = -55.415083 kcal Electronic energy + Delta-G solvation = -23504.579079 eV Core-core repulsion = 20327.653464 eV Total energy + Delta-G solvation = -3176.925615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79765 -39.54478 -37.73317 -35.22535 -34.79802 -33.86802 -31.84106 -30.48348 -28.69585 -27.50181 -25.91530 -24.88241 -23.43517 -22.28859 -21.81595 -20.90627 -20.18195 -18.28398 -17.53743 -17.02422 -16.79159 -16.60715 -16.31331 -15.96201 -15.44770 -15.19606 -15.10008 -14.63233 -14.22995 -14.10397 -13.76812 -13.66548 -13.49579 -13.28346 -13.00614 -12.95493 -12.80191 -12.67631 -12.46663 -12.29039 -12.13283 -11.95274 -11.82982 -11.73547 -11.65026 -11.38412 -11.28344 -10.95497 -10.78603 -10.51043 -9.66071 -8.92587 -8.08981 -6.26605 1.35237 1.39211 1.47760 1.52947 2.06643 2.39517 3.15697 3.26821 3.44732 3.59885 3.91668 3.97377 4.02453 4.12975 4.24700 4.30592 4.36856 4.40329 4.46115 4.57510 4.61674 4.70636 4.78357 4.86475 4.86964 4.91744 4.98210 5.02384 5.04799 5.15385 5.16536 5.24721 5.32005 5.38052 5.43960 5.46334 5.49955 5.54815 5.62586 5.85352 6.15440 6.24133 6.36036 6.65670 6.95210 7.15762 7.44099 8.92282 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.006111 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.525810 B = 4580.851308 C = 5797.311940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.063 3.937 4 N -0.539 5.539 5 C 0.198 3.802 6 C -0.540 4.540 7 H 0.051 0.949 8 C 0.018 3.982 9 N -0.924 5.924 10 Si 0.943 3.057 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.278 1.278 14 C 0.096 3.904 15 H 0.023 0.977 16 C -0.117 4.117 17 C 0.130 3.870 18 N -0.615 5.615 19 C 0.514 3.486 20 O -0.585 6.585 21 C -0.145 4.145 22 C -0.115 4.115 23 C 0.130 3.870 24 H 0.081 0.919 25 C -0.109 4.109 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.014 0.986 32 H 0.079 0.921 33 H 0.008 0.992 34 H 0.015 0.985 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 6.273 -8.343 10.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.065 4.065 4 N -0.262 5.262 5 C 0.072 3.928 6 C -0.579 4.579 7 H 0.069 0.931 8 C -0.181 4.181 9 N -0.564 5.564 10 Si 0.769 3.231 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.204 1.204 14 C -0.013 4.013 15 H 0.041 0.959 16 C -0.156 4.156 17 C 0.008 3.992 18 N -0.348 5.348 19 C 0.304 3.696 20 O -0.467 6.467 21 C -0.185 4.185 22 C -0.153 4.153 23 C 0.026 3.974 24 H 0.099 0.901 25 C -0.147 4.147 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.408 6.297 -9.124 11.094 hybrid contribution -0.494 0.479 2.067 2.178 sum -0.086 6.776 -7.058 9.784 Atomic orbital electron populations 1.21662 0.94204 1.01994 1.01846 1.21417 0.96394 0.96540 1.00838 1.22018 0.88415 0.96993 0.99059 1.62556 1.05351 1.17473 1.40807 1.19484 0.93948 0.93652 0.85718 1.21908 1.36652 1.05969 0.93366 0.93064 1.25628 0.95074 0.95743 1.01662 1.70053 1.40404 1.20865 1.25089 0.85740 0.77969 0.79070 0.80295 1.19442 1.21072 1.20398 1.21348 0.94841 0.89616 0.95485 0.95923 1.22015 1.01148 0.94913 0.97509 1.21810 0.77819 0.96788 1.02787 1.48767 1.06554 1.59896 1.19612 1.21315 0.88840 0.79120 0.80370 1.90662 1.84339 1.37323 1.34371 1.22648 0.94627 1.03238 0.97949 1.22621 0.92735 1.05135 0.94811 1.21841 0.94061 0.93657 0.87812 0.90140 1.21943 0.94864 0.95603 1.02322 0.92040 0.93523 0.91344 0.91956 0.94737 0.96720 0.90238 0.97392 0.96683 0.92867 0.91541 0.89866 0.89310 0.90502 0.86606 0.86742 0.88120 0.87939 0.91357 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.11 -3.93 5.67 30.60 0.17 -3.75 16 3 C 0.06 2.27 4.59 86.30 0.40 2.67 16 4 N -0.54 -21.15 4.60 -875.34 -4.02 -25.17 16 5 C 0.20 9.59 4.37 85.56 0.37 9.97 16 6 C -0.54 -27.80 7.43 25.60 0.19 -27.61 16 7 H 0.05 2.65 5.87 -2.91 -0.02 2.63 16 8 C 0.02 0.97 5.46 84.65 0.46 1.44 16 9 N -0.92 -52.46 13.29 21.45 0.28 -52.17 16 10 Si 0.94 42.21 29.54 68.60 2.03 44.24 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.10 3.28 1.41 44.94 0.06 3.35 16 15 H 0.02 0.89 6.56 -2.39 -0.02 0.87 16 16 C -0.12 -3.25 5.24 30.79 0.16 -3.09 16 17 C 0.13 3.35 6.94 86.46 0.60 3.95 16 18 N -0.62 -16.73 2.93 -791.57 -2.32 -19.05 16 19 C 0.51 14.60 8.03 88.07 0.71 15.31 16 20 O -0.59 -21.04 17.79 -3.04 -0.05 -21.09 16 21 C -0.14 -2.87 6.96 31.16 0.22 -2.65 16 22 C -0.12 -2.23 6.82 31.80 0.22 -2.01 16 23 C 0.13 3.38 3.54 44.96 0.16 3.54 16 24 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 25 C -0.11 -3.47 4.21 30.70 0.13 -3.34 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.03 1.42 6.66 -2.39 -0.02 1.41 16 31 H 0.01 0.60 6.76 -2.39 -0.02 0.58 16 32 H 0.08 2.42 5.93 -2.39 -0.01 2.40 16 33 H 0.01 0.43 6.30 -2.39 -0.02 0.42 16 34 H 0.02 0.78 6.18 -2.39 -0.01 0.76 16 35 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.12 6.16 -2.39 -0.01 2.11 16 38 H 0.09 2.24 7.95 -2.39 -0.02 2.22 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.10 1.86 7.82 -2.38 -0.02 1.84 16 44 H 0.07 2.60 6.07 -2.39 -0.01 2.58 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.54 340.16 1.44 -62.11 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.96 Total: 16.41 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.56 Total: -5.27 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -6.06 Total: -96.40 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -63.54 1.44 -62.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172188918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.693 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds