Wall clock time and date at job start Tue Mar 31 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47485 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47198 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47682 * 240.00190 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.54198 * 110.81632 * 299.00519 * 17 16 14 19 19 C 1.55854 * 102.83876 * 216.60541 * 18 17 16 20 20 C 1.54908 * 101.27566 * 36.35913 * 19 18 17 21 21 N 1.47865 * 110.84934 * 179.97438 * 17 16 14 22 22 C 1.47868 * 108.42502 * 238.35602 * 21 17 16 23 23 C 1.54871 * 104.90984 * 23.80959 * 22 21 17 24 24 C 1.54216 * 110.81607 * 61.08606 * 17 16 14 25 25 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 28 28 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 30 30 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 33 33 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 34 34 H 1.08998 * 110.67401 * 336.17164 * 18 17 16 35 35 H 1.09007 * 110.67328 * 99.31647 * 18 17 16 36 36 H 1.08999 * 111.70801 * 278.15266 * 19 18 17 37 37 H 1.09004 * 110.65050 * 154.10232 * 19 18 17 38 38 H 1.09001 * 110.38786 * 202.90104 * 20 19 18 39 39 H 1.08994 * 110.38973 * 80.50365 * 20 19 18 40 40 H 1.08994 * 110.35315 * 142.67303 * 22 21 17 41 41 H 1.09003 * 110.34830 * 264.95693 * 22 21 17 42 42 H 1.08993 * 110.98754 * 81.04678 * 23 22 21 43 43 H 1.09002 * 110.99083 * 204.81570 * 23 22 21 44 44 H 1.08998 * 110.70502 * 216.83317 * 24 17 16 45 45 H 1.09004 * 110.70553 * 340.06452 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5989 1.5458 -0.1944 11 1 6.4970 -0.5180 -1.4632 12 1 6.3991 1.6163 -2.6103 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3413 2.6275 0.4362 16 6 0.0325 3.3279 2.6587 17 6 -1.3884 3.8799 2.5269 18 6 -1.4656 4.9313 1.4017 19 6 -2.4733 5.9749 1.9713 20 6 -2.1050 5.9616 3.4759 21 7 -1.8135 4.5430 3.7783 22 6 -3.0382 3.8750 4.2685 23 6 -2.9931 2.4560 3.6496 24 6 -2.3939 2.7443 2.2486 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0614 -2.9499 31 1 2.2722 2.1230 1.9978 32 1 0.0663 2.6011 3.4704 33 1 0.7208 4.1451 2.8738 34 1 -0.4856 5.3723 1.2191 35 1 -1.8660 4.4896 0.4891 36 1 -3.5064 5.6624 1.8193 37 1 -2.2966 6.9579 1.5348 38 1 -2.9448 6.3127 4.0756 39 1 -1.2241 6.5775 3.6567 40 1 -3.0275 3.8146 5.3567 41 1 -3.9244 4.4097 3.9264 42 1 -2.3410 1.7995 4.2256 43 1 -3.9946 2.0338 3.5674 44 1 -3.1696 3.0769 1.5588 45 1 -1.8827 1.8636 1.8597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181110135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:15 Heat of formation + Delta-G solvation = -43.493739 kcal Electronic energy + Delta-G solvation = -23519.835762 eV Core-core repulsion = 20343.427096 eV Total energy + Delta-G solvation = -3176.408667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59098 -38.54879 -35.04332 -33.61808 -32.34776 -32.02834 -30.88897 -29.32497 -27.19815 -25.75049 -25.31659 -22.96205 -21.38008 -21.15709 -20.42433 -19.25454 -18.64492 -16.85332 -16.18938 -15.66256 -15.23635 -14.94810 -14.87659 -14.60480 -14.15593 -13.57510 -13.53352 -13.13282 -12.82721 -12.66495 -12.31360 -11.98113 -11.75911 -11.51229 -11.43917 -11.34263 -11.28710 -11.14263 -10.92423 -10.85236 -10.78599 -10.64004 -10.40137 -10.25683 -10.14476 -10.10089 -9.58899 -9.00854 -8.80013 -8.47522 -8.42885 -7.73202 -6.10516 -4.19367 3.24437 3.32558 3.35182 3.53550 3.79419 4.30711 4.55442 4.57938 4.62214 4.94745 5.04840 5.11499 5.15833 5.21014 5.27657 5.43733 5.49305 5.53429 5.73126 5.73967 5.82413 5.85812 5.92113 6.01184 6.07074 6.13712 6.29030 6.36449 6.38757 6.41348 6.43201 6.53726 6.69625 7.01235 7.03696 7.09067 7.23077 7.40837 7.53122 7.65719 7.78058 7.94489 8.21740 8.75497 8.82519 9.23644 9.48852 10.94785 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.004293 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.212826 B = 6520.388618 C = 6880.402102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.546 6.546 16 C -0.118 4.118 17 C 0.112 3.888 18 C -0.117 4.117 19 C -0.157 4.157 20 C 0.037 3.963 21 N -0.513 5.513 22 C 0.037 3.963 23 C -0.137 4.137 24 C -0.121 4.121 25 H 0.020 0.980 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 7.107 11.433 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.425 6.425 16 C -0.159 4.159 17 C 0.023 3.977 18 C -0.156 4.156 19 C -0.196 4.196 20 C -0.091 4.091 21 N -0.236 5.236 22 C -0.091 4.091 23 C -0.175 4.175 24 C -0.159 4.159 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.001 6.949 10.992 17.034 hybrid contribution 0.722 0.021 -0.335 0.796 sum -10.279 6.971 10.657 16.365 Atomic orbital electron populations 1.21842 0.98375 0.97857 1.01219 1.21929 0.92608 0.99959 1.02135 1.18731 0.94039 0.89078 0.81222 0.93411 1.21298 0.90908 1.38713 1.06168 0.92117 1.24881 0.98507 0.94868 0.95436 1.69904 1.34972 1.37802 1.09357 0.86429 0.85042 0.77745 0.78092 1.19753 1.20915 1.20926 1.46500 1.14687 1.56305 1.18382 1.20310 0.82649 0.79250 0.89186 1.90644 1.51282 1.59794 1.40811 1.21537 0.96355 1.01029 0.96930 1.21876 0.94048 0.94049 0.87740 1.22906 0.99143 0.94965 0.98572 1.23280 0.99484 1.00102 0.96686 1.23197 1.00571 0.90505 0.94820 1.65045 1.29075 1.02039 1.27469 1.23133 0.91474 0.94426 1.00025 1.22786 1.01061 0.96555 0.97062 1.22830 0.97850 0.99441 0.95794 0.96093 0.94161 0.93186 0.88442 0.95179 0.92694 0.78094 0.89553 0.89500 0.91265 0.89733 0.91697 0.91078 0.91533 0.90316 0.90623 0.93661 0.90948 0.91242 0.91584 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.72 2.24 -69.09 -0.15 6.57 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.42 5.03 -54.94 -0.28 -14.69 16 14 C 0.50 9.40 5.56 -10.99 -0.06 9.34 16 15 O -0.55 -11.59 10.03 5.55 0.06 -11.54 16 16 C -0.12 -1.74 5.06 -27.88 -0.14 -1.88 16 17 C 0.11 1.56 0.67 -129.81 -0.09 1.47 16 18 C -0.12 -1.67 4.64 -24.58 -0.11 -1.78 16 19 C -0.16 -1.76 7.05 -24.20 -0.17 -1.93 16 20 C 0.04 0.40 6.53 -2.24 -0.01 0.39 16 21 N -0.51 -6.31 5.41 -212.68 -1.15 -7.46 16 22 C 0.04 0.40 6.50 -2.30 -0.01 0.39 16 23 C -0.14 -1.56 7.07 -24.65 -0.17 -1.73 16 24 C -0.12 -1.70 5.13 -25.00 -0.13 -1.82 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.84 5.08 -51.93 -0.26 0.58 16 27 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 35 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.62 7.57 -51.93 -0.39 0.22 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.46 7.53 -51.93 -0.39 0.07 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.93 7.64 -51.93 -0.40 0.54 16 45 H 0.09 1.43 5.76 -51.93 -0.30 1.13 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -28.30 336.91 -9.72 -38.02 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.74 Total: 8.56 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.28 Total: -9.50 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.80 Total: -46.20 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.06 Total: -11.54 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.30 -9.72 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181110135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.475 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds