Wall clock time and date at job start Tue Mar 31 2020 01:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47485 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47198 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47682 * 240.00190 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.54198 * 110.81632 * 299.00519 * 17 16 14 19 19 C 1.55854 * 102.83876 * 216.60541 * 18 17 16 20 20 C 1.54908 * 101.27566 * 36.35913 * 19 18 17 21 21 N 1.47865 * 110.84934 * 179.97438 * 17 16 14 22 22 C 1.47868 * 108.42502 * 238.35602 * 21 17 16 23 23 C 1.54871 * 104.90984 * 23.80959 * 22 21 17 24 24 C 1.54216 * 110.81607 * 61.08606 * 17 16 14 25 25 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 27 27 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 28 28 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 30 30 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 33 33 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 34 34 H 1.08998 * 110.67401 * 336.17164 * 18 17 16 35 35 H 1.09007 * 110.67328 * 99.31647 * 18 17 16 36 36 H 1.08999 * 111.70801 * 278.15266 * 19 18 17 37 37 H 1.09004 * 110.65050 * 154.10232 * 19 18 17 38 38 H 1.09001 * 110.38786 * 202.90104 * 20 19 18 39 39 H 1.08994 * 110.38973 * 80.50365 * 20 19 18 40 40 H 1.08994 * 110.35315 * 142.67303 * 22 21 17 41 41 H 1.09003 * 110.34830 * 264.95693 * 22 21 17 42 42 H 1.08993 * 110.98754 * 81.04678 * 23 22 21 43 43 H 1.09002 * 110.99083 * 204.81570 * 23 22 21 44 44 H 1.08998 * 110.70502 * 216.83317 * 24 17 16 45 45 H 1.09004 * 110.70553 * 340.06452 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5989 1.5458 -0.1944 11 1 6.4970 -0.5180 -1.4632 12 1 6.3991 1.6163 -2.6103 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3413 2.6275 0.4362 16 6 0.0325 3.3279 2.6587 17 6 -1.3884 3.8799 2.5269 18 6 -1.4656 4.9313 1.4017 19 6 -2.4733 5.9749 1.9713 20 6 -2.1050 5.9616 3.4759 21 7 -1.8135 4.5430 3.7783 22 6 -3.0382 3.8750 4.2685 23 6 -2.9931 2.4560 3.6496 24 6 -2.3939 2.7443 2.2486 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0614 -2.9499 31 1 2.2722 2.1230 1.9978 32 1 0.0663 2.6011 3.4704 33 1 0.7208 4.1451 2.8738 34 1 -0.4856 5.3723 1.2191 35 1 -1.8660 4.4896 0.4891 36 1 -3.5064 5.6624 1.8193 37 1 -2.2966 6.9579 1.5348 38 1 -2.9448 6.3127 4.0756 39 1 -1.2241 6.5775 3.6567 40 1 -3.0275 3.8146 5.3567 41 1 -3.9244 4.4097 3.9264 42 1 -2.3410 1.7995 4.2256 43 1 -3.9946 2.0338 3.5674 44 1 -3.1696 3.0769 1.5588 45 1 -1.8827 1.8636 1.8597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181110135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:14 Heat of formation + Delta-G solvation = -61.740526 kcal Electronic energy + Delta-G solvation = -23520.627002 eV Core-core repulsion = 20343.427096 eV Total energy + Delta-G solvation = -3177.199907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72606 -40.04746 -36.87676 -34.56109 -34.24148 -33.33114 -32.56628 -30.46632 -28.97533 -27.06965 -26.29465 -24.88714 -22.43220 -22.17594 -21.97160 -21.01399 -19.84140 -18.64696 -17.43099 -17.12856 -16.92088 -16.35310 -16.13446 -15.82911 -15.65213 -14.71781 -14.65823 -14.57833 -14.48789 -14.19488 -13.63199 -13.43376 -13.18158 -13.00910 -12.90533 -12.83394 -12.67745 -12.53312 -12.39775 -12.24538 -12.13286 -11.92619 -11.71800 -11.65382 -11.53327 -11.45119 -11.21427 -11.00756 -10.56580 -10.35312 -9.50934 -9.37373 -8.15021 -6.31742 1.43408 1.44942 1.56434 2.00500 2.36750 2.60605 3.14119 3.25083 3.58058 3.59679 3.97218 4.05341 4.14538 4.20821 4.24836 4.36516 4.45612 4.51879 4.55085 4.59267 4.65018 4.75985 4.79748 4.80847 4.92359 5.00048 5.01604 5.04632 5.08270 5.15687 5.24909 5.25780 5.30598 5.36986 5.37780 5.48743 5.59310 5.69956 5.83802 5.98531 6.01878 6.14017 6.21050 6.77909 7.10881 7.36295 7.70939 8.90300 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.004293 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.212826 B = 6520.388618 C = 6880.402102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.572 6.572 16 C -0.106 4.106 17 C 0.113 3.887 18 C -0.121 4.121 19 C -0.148 4.148 20 C 0.039 3.961 21 N -0.517 5.517 22 C 0.039 3.961 23 C -0.130 4.130 24 C -0.122 4.122 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 7.927 13.989 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.361 5.361 14 C 0.287 3.713 15 O -0.453 6.453 16 C -0.147 4.147 17 C 0.023 3.977 18 C -0.160 4.160 19 C -0.186 4.186 20 C -0.089 4.089 21 N -0.240 5.240 22 C -0.089 4.089 23 C -0.168 4.168 24 C -0.160 4.160 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.169 7.787 13.589 19.236 hybrid contribution 0.714 -0.214 -1.170 1.387 sum -10.455 7.573 12.419 17.913 Atomic orbital electron populations 1.21665 0.96800 0.98881 1.00410 1.21775 0.93908 0.99313 1.00982 1.18282 0.93330 0.89034 0.81611 0.98473 1.21642 0.91747 1.38596 1.06512 0.91295 1.25743 1.03130 0.94462 0.95092 1.70055 1.36890 1.38549 1.09886 0.85364 0.79415 0.77795 0.78160 1.18533 1.20489 1.21043 1.46299 1.15767 1.56654 1.17355 1.21012 0.81592 0.78432 0.90311 1.90645 1.51917 1.60450 1.42279 1.21468 0.97335 1.01344 0.94510 1.21794 0.93378 0.93967 0.88548 1.22838 0.99147 0.96093 0.97899 1.23234 0.98685 0.99579 0.97146 1.23272 1.01659 0.89652 0.94344 1.65024 1.30191 1.02797 1.26016 1.23213 0.91168 0.93608 1.00880 1.22773 1.01657 0.97381 0.95021 1.22737 0.97660 0.98300 0.97332 0.94035 0.93311 0.95589 0.91316 0.94368 0.92707 0.76562 0.87941 0.88228 0.92718 0.92606 0.91275 0.89933 0.89280 0.89943 0.88913 0.92607 0.90873 0.89780 0.92383 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.37 2.24 44.24 0.10 14.47 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.85 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.85 5.29 84.66 0.45 1.29 16 8 N -0.92 -52.64 11.29 21.45 0.24 -52.40 16 9 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.71 -29.13 5.03 -446.11 -2.24 -31.37 16 14 C 0.50 18.97 5.56 87.66 0.49 19.46 16 15 O -0.57 -25.33 10.03 -3.04 -0.03 -25.36 16 16 C -0.11 -3.02 5.06 29.85 0.15 -2.87 16 17 C 0.11 3.02 0.67 4.16 0.00 3.02 16 18 C -0.12 -3.44 4.64 31.99 0.15 -3.29 16 19 C -0.15 -3.07 7.05 32.23 0.23 -2.84 16 20 C 0.04 0.71 6.53 86.75 0.57 1.28 16 21 N -0.52 -11.28 5.41 -826.80 -4.47 -15.75 16 22 C 0.04 0.71 6.50 86.76 0.56 1.27 16 23 C -0.13 -2.68 7.07 31.95 0.23 -2.46 16 24 C -0.12 -3.36 5.13 31.72 0.16 -3.19 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 26 H 0.05 2.07 5.08 -2.39 -0.01 2.06 16 27 H 0.02 1.25 7.84 -2.39 -0.02 1.23 16 28 H 0.07 3.82 5.95 -2.39 -0.01 3.81 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.40 14.18 8.54 -92.71 -0.79 13.39 16 32 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.05 1.67 7.89 -2.39 -0.02 1.65 16 35 H 0.06 1.89 7.01 -2.38 -0.02 1.87 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.29 7.57 -2.39 -0.02 1.27 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 0.92 7.53 -2.39 -0.02 0.90 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 45 H 0.06 1.92 5.76 -2.39 -0.01 1.91 16 Total: -1.00 -62.83 336.91 -0.22 -63.05 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.17 Total: 30.71 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.09 Total: -13.29 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -6.47 Total: -99.52 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.03 Total: -25.36 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -62.83 -0.22 -63.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181110135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.306 kcal (2) G-P(sol) polarization free energy of solvation -62.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds