Wall clock time and date at job start Tue Mar 31 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 6 6 C 1.52992 * 109.47701 * 64.99543 * 5 3 2 7 7 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 8 8 C 1.50697 * 109.47052 * 295.00044 * 7 3 2 9 9 O 1.21278 * 120.00209 * 359.97438 * 8 7 3 10 10 N 1.34781 * 120.00000 * 180.02562 * 8 7 3 11 11 C 1.46494 * 119.99936 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.89378 * 31.11459 * 11 10 8 13 13 C 1.54920 * 111.00256 * 267.19294 * 11 10 8 14 14 N 1.47420 * 104.82845 * 204.91754 * 13 11 10 15 15 C 1.36942 * 125.64655 * 204.07876 * 14 13 11 16 16 H 1.07997 * 120.00251 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99859 * 0.06089 * 15 14 13 18 18 N 1.31624 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47362 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47141 * 119.99935 * 19 17 15 22 22 H 1.48505 * 109.47104 * 239.99645 * 19 17 15 23 23 C 1.47021 * 108.70796 * 24.12945 * 14 13 11 24 24 C 1.54318 * 107.27084 * 358.93841 * 23 14 13 25 25 H 1.09003 * 110.71848 * 96.16639 * 24 23 14 26 26 C 1.52991 * 110.87562 * 219.37305 * 24 23 14 27 27 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47108 * 184.99796 * 5 3 2 31 31 H 1.09007 * 109.47139 * 304.99362 * 5 3 2 32 32 H 1.08997 * 109.48007 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47491 * 299.99996 * 6 5 3 34 34 H 1.09006 * 109.47432 * 59.99985 * 6 5 3 35 35 H 1.09003 * 109.47017 * 55.00198 * 7 3 2 36 36 H 1.09000 * 109.46921 * 175.00195 * 7 3 2 37 37 H 0.97002 * 119.99898 * 359.97438 * 10 8 7 38 38 H 1.08993 * 110.36359 * 323.75340 * 13 11 10 39 39 H 1.08995 * 110.36483 * 86.08048 * 13 11 10 40 40 H 0.96992 * 119.99885 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.88197 * 239.51770 * 23 14 13 42 42 H 1.08999 * 109.88379 * 118.35397 * 23 14 13 43 43 H 1.08999 * 109.47611 * 173.61130 * 26 24 23 44 44 H 1.09007 * 109.47258 * 293.61313 * 26 24 23 45 45 H 1.09007 * 109.47243 * 53.60609 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2493 6 6 2.0565 1.4305 -2.4953 7 6 2.9431 1.3862 1.2492 8 6 2.0698 1.4302 2.4765 9 8 0.8627 1.4001 2.3632 10 7 2.6301 1.5040 3.7001 11 6 1.7811 1.5461 4.8932 12 1 0.8568 0.9913 4.7324 13 6 1.4862 3.0078 5.3135 14 7 1.1957 2.9340 6.7569 15 6 0.4512 3.8368 7.4682 16 1 0.2957 3.6932 8.5273 17 6 -0.1045 4.9360 6.8279 18 7 0.0848 5.1108 5.5371 19 14 -1.1207 6.1670 7.7980 20 1 -1.1832 5.7454 9.2206 21 1 -0.4922 7.5093 7.7062 22 1 -2.4950 6.2246 7.2384 23 6 1.8387 1.7315 7.3065 24 6 2.5412 1.0120 6.1359 25 1 3.5950 1.2871 6.0910 26 6 2.3844 -0.5051 6.2556 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 1.8500 -0.9353 0.0004 30 1 3.5540 2.2877 -1.2057 31 1 3.5906 0.5103 -1.2951 32 1 2.6831 1.4877 -3.3854 33 1 1.4455 0.5289 -2.5390 34 1 1.4090 2.3063 -2.4495 35 1 3.5906 0.5105 1.2951 36 1 3.5540 2.2879 1.2055 37 1 3.5956 1.5284 3.7907 38 1 2.3577 3.6373 5.1336 39 1 0.6218 3.3912 4.7716 40 1 -0.3031 5.8790 5.0898 41 1 1.0861 1.0768 7.7460 42 1 2.5723 2.0153 8.0610 43 1 2.7882 -0.9837 5.3634 44 1 2.9253 -0.8582 7.1336 45 1 1.3279 -0.7545 6.3552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208393875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:03 Heat of formation + Delta-G solvation = -10.240640 kcal Electronic energy + Delta-G solvation = -22644.244631 eV Core-core repulsion = 19469.277927 eV Total energy + Delta-G solvation = -3174.966704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.60065 -37.79718 -36.38928 -33.79813 -32.59777 -31.68760 -30.38599 -30.29068 -27.63905 -25.64273 -24.70861 -23.30663 -21.63861 -20.53140 -19.99493 -19.60456 -19.21106 -16.89373 -16.55109 -15.78928 -15.35635 -14.90750 -14.61684 -14.37266 -14.00864 -13.68243 -13.48625 -13.03913 -12.90790 -12.81858 -12.46066 -12.24571 -12.14098 -11.79782 -11.65881 -11.35462 -11.20588 -11.15589 -11.04256 -10.79183 -10.77586 -10.57099 -10.42809 -10.30029 -9.93226 -9.74887 -9.70895 -9.43676 -8.90896 -8.62261 -8.31128 -6.80234 -5.60268 -3.03908 2.59419 3.15915 3.42613 3.47474 3.50651 3.63764 4.52244 4.77456 4.81716 4.96231 5.16108 5.23218 5.29361 5.34668 5.40477 5.47583 5.49433 5.54297 5.57488 5.74663 5.80513 5.85327 5.87586 5.92832 6.00804 6.08713 6.11231 6.19472 6.19936 6.30449 6.33955 6.41560 6.54143 6.69621 6.86976 6.89581 7.03457 7.09679 7.52320 7.65931 7.91093 8.05021 8.41712 8.77031 9.24987 9.86222 10.49742 11.42515 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.004371 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.353500 B = 6404.876179 C = 7387.336177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.152 4.152 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.508 3.492 9 O -0.528 6.528 10 N -0.718 5.718 11 C 0.121 3.879 12 H 0.091 0.909 13 C 0.149 3.851 14 N -0.604 5.604 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.010 4.010 18 N -0.918 5.918 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.112 4.112 25 H 0.072 0.928 26 C -0.136 4.136 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.392 0.608 38 H 0.011 0.989 39 H 0.111 0.889 40 H 0.251 0.749 41 H 0.027 0.973 42 H 0.022 0.978 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -10.735 -11.113 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C -0.064 4.064 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.174 4.174 8 C 0.293 3.707 9 O -0.404 6.404 10 N -0.369 5.369 11 C 0.015 3.985 12 H 0.109 0.891 13 C 0.023 3.977 14 N -0.330 5.330 15 C -0.354 4.354 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.015 3.985 24 C -0.132 4.132 25 H 0.090 0.910 26 C -0.194 4.194 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.225 0.775 38 H 0.029 0.971 39 H 0.128 0.872 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.738 -10.558 -11.207 17.232 hybrid contribution 0.131 0.683 0.706 0.991 sum 7.869 -9.875 -10.501 16.423 Atomic orbital electron populations 1.23704 0.95979 1.01309 0.98937 1.22578 0.95945 0.96912 1.01577 1.20148 0.96643 0.97173 0.92397 0.89887 1.21535 0.97849 1.01748 0.94155 1.21759 0.99831 1.02207 0.97035 1.21699 0.98701 1.03829 0.93151 1.20521 0.89264 0.76386 0.84480 1.90722 1.14682 1.48581 1.86377 1.45910 1.09676 1.75188 1.06084 1.22636 0.93065 1.00782 0.81975 0.89136 1.22216 1.01258 0.89021 0.85190 1.44411 1.59265 1.24371 1.04950 1.19117 1.23407 1.00731 0.92107 0.90328 1.24818 1.01001 0.98697 0.96075 1.69825 1.48973 1.29986 1.07826 0.86007 0.79758 0.81004 0.78772 1.20508 1.21779 1.21700 1.21332 0.94416 0.89105 0.93654 1.22424 0.99369 0.94913 0.96465 0.90981 1.21724 1.01813 0.95080 1.00735 0.89437 0.88470 0.88391 0.91866 0.92064 0.93124 0.92459 0.92718 0.89432 0.89031 0.77500 0.97061 0.87173 0.93766 0.95552 0.95980 0.93174 0.92989 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 13.22 29.02 0.38 -1.79 16 2 C -0.15 -1.88 6.76 -36.02 -0.24 -2.12 16 3 C -0.04 -0.53 1.82 -91.77 -0.17 -0.70 16 4 H 0.08 1.17 7.60 -51.93 -0.39 0.78 16 5 C -0.12 -1.06 5.39 -26.74 -0.14 -1.20 16 6 C -0.15 -1.36 9.73 37.15 0.36 -0.99 16 7 C -0.13 -1.54 5.16 -27.89 -0.14 -1.69 16 8 C 0.51 8.31 7.58 -10.98 -0.08 8.23 16 9 O -0.53 -10.86 13.81 5.56 0.08 -10.79 16 10 N -0.72 -11.43 5.20 -51.73 -0.27 -11.70 16 11 C 0.12 2.38 2.87 -65.78 -0.19 2.19 16 12 H 0.09 2.00 7.45 -51.93 -0.39 1.62 16 13 C 0.15 3.75 5.58 -2.53 -0.01 3.74 16 14 N -0.60 -15.86 3.39 -170.08 -0.58 -16.44 16 15 C -0.23 -6.44 10.27 -15.06 -0.15 -6.59 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.76 10.09 55.49 0.56 -27.20 16 19 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.14 2.97 6.84 -3.07 -0.02 2.95 16 24 C -0.11 -1.92 3.19 -88.79 -0.28 -2.20 16 25 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 26 C -0.14 -1.91 9.17 37.15 0.34 -1.57 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.10 1.43 7.83 -52.48 -0.41 1.02 16 29 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.39 4.95 8.57 -40.82 -0.35 4.60 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 3.26 5.87 -51.93 -0.31 2.96 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.84 8.07 -51.92 -0.42 0.42 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -32.83 358.65 -8.37 -41.20 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.09 Total: 4.09 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.45 Total: -2.14 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.29 Total: -55.34 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.83 -8.37 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208393875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.964 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds