Wall clock time and date at job start Tue Mar 31 2020 01:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 6 6 C 1.52992 * 109.47701 * 64.99543 * 5 3 2 7 7 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 8 8 C 1.50697 * 109.47052 * 295.00044 * 7 3 2 9 9 O 1.21278 * 120.00209 * 359.97438 * 8 7 3 10 10 N 1.34781 * 120.00000 * 180.02562 * 8 7 3 11 11 C 1.46494 * 119.99936 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.89378 * 31.11459 * 11 10 8 13 13 C 1.54920 * 111.00256 * 267.19294 * 11 10 8 14 14 N 1.47420 * 104.82845 * 204.91754 * 13 11 10 15 15 C 1.36942 * 125.64655 * 204.07876 * 14 13 11 16 16 H 1.07997 * 120.00251 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99859 * 0.06089 * 15 14 13 18 18 N 1.31624 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47362 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47141 * 119.99935 * 19 17 15 22 22 H 1.48505 * 109.47104 * 239.99645 * 19 17 15 23 23 C 1.47021 * 108.70796 * 24.12945 * 14 13 11 24 24 C 1.54318 * 107.27084 * 358.93841 * 23 14 13 25 25 H 1.09003 * 110.71848 * 96.16639 * 24 23 14 26 26 C 1.52991 * 110.87562 * 219.37305 * 24 23 14 27 27 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47108 * 184.99796 * 5 3 2 31 31 H 1.09007 * 109.47139 * 304.99362 * 5 3 2 32 32 H 1.08997 * 109.48007 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47491 * 299.99996 * 6 5 3 34 34 H 1.09006 * 109.47432 * 59.99985 * 6 5 3 35 35 H 1.09003 * 109.47017 * 55.00198 * 7 3 2 36 36 H 1.09000 * 109.46921 * 175.00195 * 7 3 2 37 37 H 0.97002 * 119.99898 * 359.97438 * 10 8 7 38 38 H 1.08993 * 110.36359 * 323.75340 * 13 11 10 39 39 H 1.08995 * 110.36483 * 86.08048 * 13 11 10 40 40 H 0.96992 * 119.99885 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.88197 * 239.51770 * 23 14 13 42 42 H 1.08999 * 109.88379 * 118.35397 * 23 14 13 43 43 H 1.08999 * 109.47611 * 173.61130 * 26 24 23 44 44 H 1.09007 * 109.47258 * 293.61313 * 26 24 23 45 45 H 1.09007 * 109.47243 * 53.60609 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2493 6 6 2.0565 1.4305 -2.4953 7 6 2.9431 1.3862 1.2492 8 6 2.0698 1.4302 2.4765 9 8 0.8627 1.4001 2.3632 10 7 2.6301 1.5040 3.7001 11 6 1.7811 1.5461 4.8932 12 1 0.8568 0.9913 4.7324 13 6 1.4862 3.0078 5.3135 14 7 1.1957 2.9340 6.7569 15 6 0.4512 3.8368 7.4682 16 1 0.2957 3.6932 8.5273 17 6 -0.1045 4.9360 6.8279 18 7 0.0848 5.1108 5.5371 19 14 -1.1207 6.1670 7.7980 20 1 -1.1832 5.7454 9.2206 21 1 -0.4922 7.5093 7.7062 22 1 -2.4950 6.2246 7.2384 23 6 1.8387 1.7315 7.3065 24 6 2.5412 1.0120 6.1359 25 1 3.5950 1.2871 6.0910 26 6 2.3844 -0.5051 6.2556 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 1.8500 -0.9353 0.0004 30 1 3.5540 2.2877 -1.2057 31 1 3.5906 0.5103 -1.2951 32 1 2.6831 1.4877 -3.3854 33 1 1.4455 0.5289 -2.5390 34 1 1.4090 2.3063 -2.4495 35 1 3.5906 0.5105 1.2951 36 1 3.5540 2.2879 1.2055 37 1 3.5956 1.5284 3.7907 38 1 2.3577 3.6373 5.1336 39 1 0.6218 3.3912 4.7716 40 1 -0.3031 5.8790 5.0898 41 1 1.0861 1.0768 7.7460 42 1 2.5723 2.0153 8.0610 43 1 2.7882 -0.9837 5.3634 44 1 2.9253 -0.8582 7.1336 45 1 1.3279 -0.7545 6.3552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208393875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:02 Heat of formation + Delta-G solvation = -31.313780 kcal Electronic energy + Delta-G solvation = -22645.158431 eV Core-core repulsion = 19469.277927 eV Total energy + Delta-G solvation = -3175.880504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97276 -39.32612 -37.49651 -35.55610 -34.25457 -32.57638 -32.18298 -31.38389 -29.32147 -27.41111 -25.93318 -24.84123 -22.53717 -22.21425 -21.52725 -20.92392 -20.33467 -18.92978 -17.86013 -17.31164 -16.89790 -16.37281 -15.77885 -15.63673 -15.41549 -15.01966 -14.66580 -14.38107 -14.36632 -14.17398 -14.00876 -13.76517 -13.36967 -13.04679 -12.98594 -12.87628 -12.82373 -12.60745 -12.19817 -12.09621 -12.02516 -11.96878 -11.85035 -11.64367 -11.63774 -11.39727 -11.31688 -10.79992 -10.73922 -10.03559 -9.80199 -8.91303 -7.78925 -5.25772 1.42976 1.45228 1.55547 1.57940 1.86571 2.31547 2.49520 3.30455 3.68509 3.71408 3.87641 3.94974 3.97770 4.05799 4.12564 4.39238 4.44744 4.49481 4.56010 4.61834 4.64602 4.67549 4.71709 4.88291 4.89580 5.03742 5.04141 5.08184 5.09856 5.12177 5.21199 5.23264 5.35644 5.43100 5.44965 5.49722 5.50241 5.70545 5.82479 5.85483 6.11802 6.27363 6.77350 7.06063 7.50565 7.75446 8.37894 9.21582 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.004371 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.353500 B = 6404.876179 C = 7387.336177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 C -0.048 4.048 4 H 0.047 0.953 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.122 4.122 8 C 0.499 3.501 9 O -0.577 6.577 10 N -0.707 5.707 11 C 0.139 3.861 12 H 0.062 0.938 13 C 0.157 3.843 14 N -0.628 5.628 15 C -0.240 4.240 16 H 0.085 0.915 17 C -0.071 4.071 18 N -0.950 5.950 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.295 1.295 23 C 0.132 3.868 24 C -0.094 4.094 25 H 0.098 0.902 26 C -0.128 4.128 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.413 0.587 38 H -0.009 1.009 39 H 0.058 0.942 40 H 0.244 0.756 41 H 0.028 0.972 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 -12.489 -10.952 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.159 4.159 3 C -0.067 4.067 4 H 0.066 0.934 5 C -0.145 4.145 6 C -0.210 4.210 7 C -0.162 4.162 8 C 0.287 3.713 9 O -0.456 6.456 10 N -0.359 5.359 11 C 0.032 3.968 12 H 0.080 0.920 13 C 0.030 3.970 14 N -0.354 5.354 15 C -0.369 4.369 16 H 0.103 0.897 17 C -0.263 4.263 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.222 1.222 23 C 0.007 3.993 24 C -0.113 4.113 25 H 0.116 0.884 26 C -0.185 4.185 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.250 0.750 38 H 0.009 0.991 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.566 -12.345 -11.030 19.640 hybrid contribution -0.741 1.233 0.668 1.586 sum 9.825 -11.112 -10.362 18.094 Atomic orbital electron populations 1.23677 0.96852 1.00598 1.01358 1.22856 0.95594 0.98099 0.99350 1.20176 0.96632 0.95654 0.94210 0.93406 1.21502 0.97450 1.03328 0.92227 1.21773 0.99939 1.01332 0.97961 1.21745 0.98038 1.06636 0.89758 1.21532 0.89271 0.74820 0.85697 1.90722 1.17257 1.50584 1.87064 1.45753 1.10387 1.74774 1.04961 1.22047 0.93519 0.96539 0.84678 0.91999 1.21883 0.98087 0.92245 0.84758 1.44726 1.59561 1.25548 1.05598 1.19546 1.23350 1.01260 0.92719 0.89679 1.25721 1.02609 1.00888 0.97057 1.70139 1.50149 1.30198 1.09457 0.84956 0.77517 0.78338 0.78211 1.18592 1.21683 1.22179 1.21605 0.94649 0.87581 0.95461 1.22365 0.99649 0.96699 0.92589 0.88420 1.21671 1.01586 0.92295 1.02963 0.88442 0.91148 0.85970 0.90770 0.89818 0.91402 0.93007 0.94107 0.85516 0.86873 0.75048 0.99131 0.92376 0.94633 0.95406 0.94951 0.91152 0.90400 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.25 13.22 67.79 0.90 -4.35 16 2 C -0.14 -3.35 6.76 25.65 0.17 -3.17 16 3 C -0.05 -1.07 1.82 -11.54 -0.02 -1.09 16 4 H 0.05 1.41 7.60 -2.38 -0.02 1.39 16 5 C -0.11 -1.68 5.39 30.59 0.16 -1.52 16 6 C -0.15 -2.54 9.73 71.98 0.70 -1.84 16 7 C -0.12 -2.49 5.16 29.85 0.15 -2.34 16 8 C 0.50 16.02 7.58 87.66 0.66 16.68 16 9 O -0.58 -24.72 13.81 -3.02 -0.04 -24.76 16 10 N -0.71 -21.56 5.20 -435.96 -2.27 -23.82 16 11 C 0.14 5.49 2.87 46.39 0.13 5.62 16 12 H 0.06 2.83 7.45 -2.39 -0.02 2.81 16 13 C 0.16 8.21 5.58 86.86 0.48 8.69 16 14 N -0.63 -33.70 3.39 -692.00 -2.35 -36.05 16 15 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 16 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 17 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 18 N -0.95 -60.23 10.09 21.65 0.22 -60.01 16 19 Si 0.98 47.54 29.55 68.60 2.03 49.56 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 C 0.13 5.44 6.84 86.73 0.59 6.04 16 24 C -0.09 -2.99 3.19 -9.61 -0.03 -3.02 16 25 H 0.10 2.67 8.00 -2.39 -0.02 2.65 16 26 C -0.13 -3.16 9.17 71.98 0.66 -2.50 16 27 H 0.10 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.07 2.30 7.83 -2.91 -0.02 2.28 16 29 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.91 7.38 -2.39 -0.02 0.89 16 34 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 9.15 8.57 -92.71 -0.79 8.35 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.06 3.67 5.87 -2.39 -0.01 3.66 16 40 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.03 1.14 7.78 -2.39 -0.02 1.12 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.04 1.18 8.07 -2.38 -0.02 1.16 16 Total: -1.00 -77.36 358.65 3.64 -73.73 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.14 Total: 21.00 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.90 Total: 0.35 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.40 Total: -119.88 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.04 Total: -24.76 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -77.36 3.64 -73.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208393875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.414 kcal (2) G-P(sol) polarization free energy of solvation -77.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds