Wall clock time and date at job start Tue Mar 31 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47171 * 2 1 4 4 H 1.08992 * 109.47286 * 54.98107 * 3 2 1 5 5 C 1.50698 * 109.47065 * 174.98559 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99841 * 5 3 2 7 7 C 1.37874 * 120.00207 * 299.99383 * 5 3 2 8 8 N 1.31516 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47077 * 90.00670 * 9 7 5 11 11 H 1.48506 * 109.47123 * 209.99926 * 9 7 5 12 12 H 1.48493 * 109.47531 * 330.00132 * 9 7 5 13 13 N 1.46902 * 109.46503 * 294.98548 * 3 2 1 14 14 C 1.46899 * 110.99791 * 156.21988 * 13 3 2 15 15 C 1.53003 * 109.47242 * 154.42378 * 14 13 3 16 16 C 1.53055 * 109.44508 * 180.38241 * 15 14 13 17 17 C 1.52621 * 109.56197 * 300.66242 * 16 15 14 18 18 C 1.54185 * 109.71770 * 179.97438 * 17 16 15 19 19 C 1.54695 * 101.69059 * 144.36469 * 18 17 16 20 20 C 1.51320 * 104.32052 * 335.40263 * 19 18 17 21 21 O 1.21271 * 124.95391 * 196.27208 * 20 19 18 22 22 N 1.34857 * 109.91936 * 16.26858 * 20 19 18 23 23 C 1.52629 * 110.45214 * 58.87447 * 17 16 15 24 24 C 1.53018 * 109.46548 * 274.43607 * 14 13 3 25 25 H 1.09006 * 109.46941 * 55.42213 * 1 2 3 26 26 H 1.09000 * 109.46849 * 175.41676 * 1 2 3 27 27 H 1.09001 * 109.47795 * 295.42190 * 1 2 3 28 28 H 1.08996 * 109.47776 * 239.99602 * 2 1 3 29 29 H 1.09003 * 109.46821 * 119.99510 * 2 1 3 30 30 H 0.96993 * 120.00139 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99852 * 280.16175 * 13 3 2 32 32 H 1.08999 * 109.47264 * 34.42120 * 14 13 3 33 33 H 1.09003 * 109.47695 * 60.39124 * 15 14 13 34 34 H 1.08997 * 109.47432 * 300.38084 * 15 14 13 35 35 H 1.08994 * 109.45342 * 180.62828 * 16 15 14 36 36 H 1.09005 * 109.43711 * 60.68022 * 16 15 14 37 37 H 1.09002 * 110.98611 * 26.26038 * 18 17 16 38 38 H 1.09004 * 110.98575 * 262.45865 * 18 17 16 39 39 H 1.08994 * 110.48601 * 94.14998 * 19 18 17 40 40 H 1.08997 * 110.48708 * 216.66028 * 19 18 17 41 41 H 0.96991 * 124.35343 * 180.17601 * 22 20 19 42 42 H 1.08998 * 109.45679 * 61.13200 * 23 17 16 43 43 H 1.09000 * 109.45817 * 181.08399 * 23 17 16 44 44 H 1.08996 * 109.47721 * 299.58988 * 24 14 13 45 45 H 1.09003 * 109.47697 * 59.60441 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9817 0.8415 5 6 3.5418 1.4443 0.1242 6 1 4.1473 1.8888 -0.6519 7 6 4.1430 0.8786 1.2285 8 7 3.4057 0.3370 2.1734 9 14 6.0045 0.8815 1.3827 10 1 6.4411 2.1145 2.0858 11 1 6.4390 -0.3094 2.1562 12 1 6.6135 0.8417 0.0290 13 7 1.6516 2.0991 -1.2554 14 6 1.6008 3.5582 -1.0926 15 6 1.8312 4.2308 -2.4474 16 6 1.7877 5.7511 -2.2754 17 6 0.4300 6.1630 -1.7128 18 6 0.3825 7.6941 -1.5375 19 6 -1.0914 8.0044 -1.8903 20 6 -1.5135 6.8548 -2.7792 21 8 -2.4939 6.8522 -3.4929 22 7 -0.6382 5.8360 -2.6592 23 6 0.1806 5.4824 -0.3697 24 6 0.2292 3.9631 -0.5485 25 1 -0.3633 0.5833 -0.8462 26 1 -0.3633 -1.0244 -0.0821 27 1 -0.3635 0.4411 0.9281 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.8285 -0.0613 2.9501 31 1 2.2741 1.8406 -2.0063 32 1 2.3760 3.8730 -0.3941 33 1 1.0520 3.9215 -3.1440 34 1 2.8054 3.9370 -2.8380 35 1 1.9407 6.2303 -3.2423 36 1 2.5748 6.0610 -1.5880 37 1 1.0624 8.1879 -2.2318 38 1 0.6051 7.9763 -0.5084 39 1 -1.7018 8.0328 -0.9878 40 1 -1.1640 8.9494 -2.4287 41 1 -0.7075 4.9956 -3.1385 42 1 0.9481 5.7891 0.3409 43 1 -0.8000 5.7724 0.0077 44 1 -0.5457 3.6547 -1.2502 45 1 0.0623 3.4783 0.4135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:07 Heat of formation + Delta-G solvation = -62.869091 kcal Electronic energy + Delta-G solvation = -23222.247198 eV Core-core repulsion = 20044.998353 eV Total energy + Delta-G solvation = -3177.248845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98197 -38.20641 -36.42123 -34.38100 -31.97055 -31.44079 -30.82906 -30.70898 -28.07509 -25.91274 -23.71409 -22.90703 -22.37613 -20.90792 -20.70899 -19.40964 -19.03629 -17.06917 -16.60786 -16.01315 -15.33692 -14.96892 -14.63078 -14.09112 -13.95159 -13.90540 -13.68007 -13.31638 -13.03700 -12.88803 -12.66922 -12.38231 -12.11748 -11.85606 -11.67971 -11.44442 -11.21852 -11.13856 -11.00879 -10.95792 -10.73298 -10.53961 -10.20055 -10.13817 -9.92727 -9.88463 -9.58933 -9.43848 -9.05041 -9.00910 -8.39872 -7.28295 -6.02713 -4.16027 2.57139 3.22741 3.30918 3.32987 3.35870 4.19746 4.33394 4.35842 4.54841 4.83959 4.90854 5.05640 5.08954 5.22814 5.37290 5.48269 5.48967 5.59630 5.63802 5.66313 5.72232 5.81317 5.90428 6.07000 6.16925 6.24238 6.34683 6.36815 6.48143 6.50841 6.68619 6.72062 6.84387 6.85903 7.06002 7.11424 7.16738 7.43459 7.58038 7.75284 8.07021 8.13804 8.24992 8.32147 8.64861 8.97401 9.51890 10.97057 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.004424 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.812356 B = 6327.205972 C = 6932.034001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.093 3.907 15 C -0.120 4.120 16 C -0.116 4.116 17 C 0.162 3.838 18 C -0.125 4.125 19 C -0.157 4.157 20 C 0.518 3.482 21 O -0.544 6.544 22 N -0.713 5.713 23 C -0.122 4.122 24 C -0.103 4.103 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.411 0.589 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 12.672 -5.422 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.018 4.018 15 C -0.158 4.158 16 C -0.155 4.155 17 C 0.075 3.925 18 C -0.163 4.163 19 C -0.197 4.197 20 C 0.305 3.695 21 O -0.422 6.422 22 N -0.368 5.368 23 C -0.161 4.161 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.250 0.750 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.286 12.581 -5.439 14.690 hybrid contribution 2.119 -0.311 0.137 2.147 sum -3.167 12.270 -5.302 13.736 Atomic orbital electron populations 1.21711 0.99047 0.98444 1.00318 1.21497 0.92069 0.99392 1.01572 1.19146 0.92587 0.91121 0.86297 0.94933 1.21866 0.92840 1.38216 1.05475 0.92987 1.24925 0.97797 0.95002 0.95748 1.69874 1.34794 1.38178 1.09416 0.86685 0.86205 0.77546 0.78072 1.20788 1.21176 1.20047 1.60914 1.56283 1.04822 1.09563 1.21324 0.95919 0.89893 0.94661 1.21738 1.01735 0.93908 0.98462 1.21772 0.95441 0.97071 1.01197 1.20755 0.87744 0.94235 0.89732 1.22711 0.95727 0.94283 1.03618 1.22360 0.97709 0.98592 1.01011 1.20988 0.81919 0.85068 0.81559 1.90736 1.27470 1.82154 1.41845 1.46413 1.27045 1.18388 1.44996 1.21908 1.01972 0.97007 0.95206 1.21492 0.97947 0.92928 1.01762 0.93128 0.95750 0.94635 0.95239 0.89261 0.92892 0.85635 0.93265 0.92043 0.91841 0.91611 0.90314 0.89937 0.89027 0.87956 0.88407 0.74968 0.90632 0.91898 0.92188 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.15 0.37 -2.42 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.63 16 3 C 0.22 5.06 1.79 -68.86 -0.12 4.94 16 4 H 0.03 0.85 7.15 -51.93 -0.37 0.48 16 5 C -0.54 -14.02 8.21 -34.44 -0.28 -14.31 16 6 H 0.05 1.33 7.76 -52.48 -0.41 0.92 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.69 -13.21 5.43 -100.94 -0.55 -13.76 16 14 C 0.09 1.51 2.29 -67.70 -0.16 1.35 16 15 C -0.12 -1.56 5.07 -26.70 -0.14 -1.70 16 16 C -0.12 -1.22 4.81 -26.90 -0.13 -1.35 16 17 C 0.16 1.64 0.72 -131.63 -0.09 1.55 16 18 C -0.13 -0.98 6.17 -25.22 -0.16 -1.14 16 19 C -0.16 -1.38 6.85 -26.69 -0.18 -1.56 16 20 C 0.52 6.59 8.46 -10.65 -0.09 6.50 16 21 O -0.54 -9.20 18.03 5.57 0.10 -9.10 16 22 N -0.71 -8.15 4.93 -47.20 -0.23 -8.38 16 23 C -0.12 -1.41 4.79 -26.89 -0.13 -1.54 16 24 C -0.10 -1.53 5.30 -26.69 -0.14 -1.67 16 25 H 0.05 0.98 7.63 -51.93 -0.40 0.59 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.34 5.95 -51.93 -0.31 2.03 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.33 6.32 8.05 -39.29 -0.32 6.00 16 32 H 0.05 0.94 7.58 -51.93 -0.39 0.54 16 33 H 0.06 0.78 6.99 -51.93 -0.36 0.42 16 34 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 38 H 0.09 0.60 7.86 -51.93 -0.41 0.19 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 4.84 7.58 -40.82 -0.31 4.53 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.90 7.61 -51.93 -0.40 0.51 16 45 H 0.07 1.13 7.45 -51.93 -0.39 0.74 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -28.91 344.79 -9.20 -38.11 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.83 Total: 8.44 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.49 Total: -12.29 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.15 Total: -45.85 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.10 Total: -9.10 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.91 -9.20 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.757 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds