Wall clock time and date at job start Tue Mar 31 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47171 * 2 1 4 4 H 1.08992 * 109.47286 * 54.98107 * 3 2 1 5 5 C 1.50698 * 109.47065 * 174.98559 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99841 * 5 3 2 7 7 C 1.37874 * 120.00207 * 299.99383 * 5 3 2 8 8 N 1.31516 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47077 * 90.00670 * 9 7 5 11 11 H 1.48506 * 109.47123 * 209.99926 * 9 7 5 12 12 H 1.48493 * 109.47531 * 330.00132 * 9 7 5 13 13 N 1.46902 * 109.46503 * 294.98548 * 3 2 1 14 14 C 1.46899 * 110.99791 * 156.21988 * 13 3 2 15 15 C 1.53003 * 109.47242 * 154.42378 * 14 13 3 16 16 C 1.53055 * 109.44508 * 180.38241 * 15 14 13 17 17 C 1.52621 * 109.56197 * 300.66242 * 16 15 14 18 18 C 1.54185 * 109.71770 * 179.97438 * 17 16 15 19 19 C 1.54695 * 101.69059 * 144.36469 * 18 17 16 20 20 C 1.51320 * 104.32052 * 335.40263 * 19 18 17 21 21 O 1.21271 * 124.95391 * 196.27208 * 20 19 18 22 22 N 1.34857 * 109.91936 * 16.26858 * 20 19 18 23 23 C 1.52629 * 110.45214 * 58.87447 * 17 16 15 24 24 C 1.53018 * 109.46548 * 274.43607 * 14 13 3 25 25 H 1.09006 * 109.46941 * 55.42213 * 1 2 3 26 26 H 1.09000 * 109.46849 * 175.41676 * 1 2 3 27 27 H 1.09001 * 109.47795 * 295.42190 * 1 2 3 28 28 H 1.08996 * 109.47776 * 239.99602 * 2 1 3 29 29 H 1.09003 * 109.46821 * 119.99510 * 2 1 3 30 30 H 0.96993 * 120.00139 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99852 * 280.16175 * 13 3 2 32 32 H 1.08999 * 109.47264 * 34.42120 * 14 13 3 33 33 H 1.09003 * 109.47695 * 60.39124 * 15 14 13 34 34 H 1.08997 * 109.47432 * 300.38084 * 15 14 13 35 35 H 1.08994 * 109.45342 * 180.62828 * 16 15 14 36 36 H 1.09005 * 109.43711 * 60.68022 * 16 15 14 37 37 H 1.09002 * 110.98611 * 26.26038 * 18 17 16 38 38 H 1.09004 * 110.98575 * 262.45865 * 18 17 16 39 39 H 1.08994 * 110.48601 * 94.14998 * 19 18 17 40 40 H 1.08997 * 110.48708 * 216.66028 * 19 18 17 41 41 H 0.96991 * 124.35343 * 180.17601 * 22 20 19 42 42 H 1.08998 * 109.45679 * 61.13200 * 23 17 16 43 43 H 1.09000 * 109.45817 * 181.08399 * 23 17 16 44 44 H 1.08996 * 109.47721 * 299.58988 * 24 14 13 45 45 H 1.09003 * 109.47697 * 59.60441 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9817 0.8415 5 6 3.5418 1.4443 0.1242 6 1 4.1473 1.8888 -0.6519 7 6 4.1430 0.8786 1.2285 8 7 3.4057 0.3370 2.1734 9 14 6.0045 0.8815 1.3827 10 1 6.4411 2.1145 2.0858 11 1 6.4390 -0.3094 2.1562 12 1 6.6135 0.8417 0.0290 13 7 1.6516 2.0991 -1.2554 14 6 1.6008 3.5582 -1.0926 15 6 1.8312 4.2308 -2.4474 16 6 1.7877 5.7511 -2.2754 17 6 0.4300 6.1630 -1.7128 18 6 0.3825 7.6941 -1.5375 19 6 -1.0914 8.0044 -1.8903 20 6 -1.5135 6.8548 -2.7792 21 8 -2.4939 6.8522 -3.4929 22 7 -0.6382 5.8360 -2.6592 23 6 0.1806 5.4824 -0.3697 24 6 0.2292 3.9631 -0.5485 25 1 -0.3633 0.5833 -0.8462 26 1 -0.3633 -1.0244 -0.0821 27 1 -0.3635 0.4411 0.9281 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.8285 -0.0613 2.9501 31 1 2.2741 1.8406 -2.0063 32 1 2.3760 3.8730 -0.3941 33 1 1.0520 3.9215 -3.1440 34 1 2.8054 3.9370 -2.8380 35 1 1.9407 6.2303 -3.2423 36 1 2.5748 6.0610 -1.5880 37 1 1.0624 8.1879 -2.2318 38 1 0.6051 7.9763 -0.5084 39 1 -1.7018 8.0328 -0.9878 40 1 -1.1640 8.9494 -2.4287 41 1 -0.7075 4.9956 -3.1385 42 1 0.9481 5.7891 0.3409 43 1 -0.8000 5.7724 0.0077 44 1 -0.5457 3.6547 -1.2502 45 1 0.0623 3.4783 0.4135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:06 Heat of formation + Delta-G solvation = -81.547117 kcal Electronic energy + Delta-G solvation = -23223.057138 eV Core-core repulsion = 20044.998353 eV Total energy + Delta-G solvation = -3178.058785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90304 -39.39701 -37.86008 -35.82025 -33.79469 -32.38628 -32.20232 -31.74958 -29.45010 -27.60027 -24.98895 -24.24263 -23.63061 -21.83130 -21.76519 -21.22483 -20.09590 -18.59092 -18.06431 -16.88847 -16.81595 -16.48700 -15.97949 -15.41163 -15.06596 -15.00258 -14.85055 -14.66958 -14.39542 -14.27441 -13.68461 -13.45880 -13.25906 -13.17612 -13.09485 -12.87549 -12.84487 -12.71955 -12.53683 -12.20040 -12.05110 -11.85799 -11.61984 -11.51770 -11.45726 -11.15916 -11.07869 -10.88291 -10.79463 -10.43179 -9.98860 -8.98780 -8.02787 -6.25395 1.38286 1.41024 1.49282 1.62089 2.41182 2.46729 3.16542 3.35862 3.57565 3.69693 3.77158 3.99288 4.10426 4.20851 4.41393 4.43843 4.58562 4.59961 4.61639 4.66668 4.72617 4.77927 4.90959 4.91963 4.98171 5.07612 5.11066 5.15664 5.20171 5.22786 5.28789 5.30721 5.41806 5.48002 5.49009 5.58592 5.67896 5.80937 5.94892 6.13061 6.14852 6.24528 6.45697 6.90295 7.07123 7.29350 7.46610 8.93005 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.004424 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.812356 B = 6327.205972 C = 6932.034001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.227 3.773 4 H 0.000 1.000 5 C -0.555 4.555 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.681 5.681 14 C 0.094 3.906 15 C -0.113 4.113 16 C -0.110 4.110 17 C 0.163 3.837 18 C -0.115 4.115 19 C -0.149 4.149 20 C 0.510 3.490 21 O -0.595 6.595 22 N -0.711 5.711 23 C -0.116 4.116 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.028 0.972 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.260 0.740 31 H 0.327 0.673 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 14.626 -6.093 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.118 3.882 4 H 0.018 0.982 5 C -0.594 4.594 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.310 5.310 14 C -0.017 4.017 15 C -0.151 4.151 16 C -0.149 4.149 17 C 0.077 3.923 18 C -0.153 4.153 19 C -0.189 4.189 20 C 0.298 3.702 21 O -0.476 6.476 22 N -0.364 5.364 23 C -0.155 4.155 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.245 0.755 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.581 14.545 -6.106 16.426 hybrid contribution 1.896 -0.974 0.350 2.160 sum -2.685 13.570 -5.756 14.983 Atomic orbital electron populations 1.21559 0.96667 0.99721 1.00257 1.21376 0.94187 0.98917 0.99820 1.18856 0.91299 0.91118 0.86937 0.98207 1.22178 0.94139 1.37755 1.05352 0.93169 1.25646 1.01862 0.94866 0.95600 1.70011 1.36340 1.38944 1.09839 0.85721 0.81329 0.77470 0.78080 1.20260 1.21196 1.19497 1.60857 1.55672 1.06785 1.07661 1.21381 0.95846 0.88152 0.96277 1.21654 1.01655 0.95761 0.96059 1.21756 0.95797 0.94817 1.02495 1.20806 0.87046 0.96152 0.88291 1.22753 0.95327 0.91724 1.05458 1.22400 0.98355 0.97436 1.00685 1.21688 0.81111 0.86173 0.81227 1.90707 1.29582 1.83201 1.44120 1.46534 1.27150 1.18079 1.44653 1.21873 1.02787 0.94279 0.96571 1.21392 0.96843 0.95498 0.99770 0.92331 0.93893 0.95320 0.95536 0.92303 0.93024 0.85611 0.96057 0.91595 0.92172 0.89720 0.89558 0.88155 0.86982 0.86687 0.86818 0.75542 0.90002 0.91011 0.92449 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.98 5.45 30.59 0.17 -4.81 16 3 C 0.23 10.92 1.79 44.17 0.08 11.00 16 4 H 0.00 0.00 7.15 -2.39 -0.02 -0.02 16 5 C -0.56 -29.06 8.21 25.60 0.21 -28.85 16 6 H 0.05 2.59 7.76 -2.91 -0.02 2.56 16 7 C 0.02 1.08 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.40 11.29 21.45 0.24 -51.16 16 9 Si 0.95 42.29 29.54 68.60 2.03 44.31 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.68 -26.58 5.43 -473.27 -2.57 -29.15 16 14 C 0.09 3.06 2.29 44.92 0.10 3.16 16 15 C -0.11 -2.79 5.07 30.61 0.16 -2.63 16 16 C -0.11 -2.00 4.81 30.49 0.15 -1.85 16 17 C 0.16 2.87 0.72 3.77 0.00 2.87 16 18 C -0.12 -1.32 6.17 31.57 0.19 -1.13 16 19 C -0.15 -2.13 6.85 30.62 0.21 -1.92 16 20 C 0.51 12.10 8.46 87.84 0.74 12.84 16 21 O -0.59 -19.84 18.03 -3.00 -0.05 -19.89 16 22 N -0.71 -14.99 4.93 -421.59 -2.08 -17.07 16 23 C -0.12 -2.50 4.79 30.49 0.15 -2.35 16 24 C -0.10 -2.88 5.30 30.62 0.16 -2.72 16 25 H 0.06 2.26 7.63 -2.38 -0.02 2.24 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 3.18 5.95 -2.39 -0.01 3.17 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.33 12.70 8.05 -89.69 -0.72 11.97 16 32 H 0.02 0.82 7.58 -2.39 -0.02 0.81 16 33 H 0.07 1.58 6.99 -2.39 -0.02 1.56 16 34 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.10 0.88 7.89 -2.39 -0.02 0.86 16 38 H 0.11 0.92 7.86 -2.38 -0.02 0.90 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.41 9.12 7.58 -92.71 -0.70 8.41 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.72 7.61 -2.39 -0.02 1.70 16 45 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 Total: -1.00 -64.54 344.79 0.59 -63.95 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.45 Total: 28.23 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 3.48 Total: -19.23 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.41 Total: -97.37 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -64.54 0.59 -63.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.596 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds