Wall clock time and date at job start Tue Mar 31 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 H 1.08999 * 109.47145 * 174.23713 * 3 2 1 5 5 C 1.50703 * 109.46650 * 54.23758 * 3 2 1 6 6 H 1.07996 * 119.99732 * 239.99361 * 5 3 2 7 7 C 1.37878 * 120.00115 * 60.00504 * 5 3 2 8 8 N 1.31513 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99815 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47489 * 59.99799 * 9 7 5 11 11 H 1.48502 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47040 * 299.99341 * 9 7 5 13 13 N 1.46894 * 109.46903 * 294.23745 * 3 2 1 14 14 C 1.46896 * 111.00377 * 275.12222 * 13 3 2 15 15 C 1.53013 * 109.46657 * 274.81377 * 14 13 3 16 16 C 1.53056 * 109.43474 * 179.60130 * 15 14 13 17 17 C 1.52629 * 109.55409 * 59.35177 * 16 15 14 18 18 C 1.54167 * 109.77948 * 62.28348 * 17 16 15 19 19 C 1.54700 * 101.69454 * 144.29251 * 18 17 16 20 20 C 1.51314 * 104.20770 * 335.48847 * 19 18 17 21 21 O 1.21284 * 124.94853 * 196.20169 * 20 19 18 22 22 N 1.34520 * 110.10106 * 16.20483 * 20 19 18 23 23 C 1.52627 * 110.44730 * 301.10654 * 17 16 15 24 24 C 1.53003 * 109.47348 * 154.79367 * 14 13 3 25 25 H 1.08996 * 109.47163 * 178.66218 * 1 2 3 26 26 H 1.08999 * 109.46395 * 58.66666 * 1 2 3 27 27 H 1.08996 * 109.47054 * 298.66626 * 1 2 3 28 28 H 1.09007 * 109.47034 * 120.00065 * 2 1 3 29 29 H 1.09004 * 109.47073 * 239.99577 * 2 1 3 30 30 H 0.97001 * 120.00157 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00459 * 39.07779 * 13 3 2 32 32 H 1.09000 * 109.46662 * 34.79856 * 14 13 3 33 33 H 1.09004 * 109.47375 * 299.58903 * 15 14 13 34 34 H 1.09001 * 109.47960 * 59.61229 * 15 14 13 35 35 H 1.08990 * 109.45928 * 299.32559 * 16 15 14 36 36 H 1.09004 * 109.44419 * 179.36649 * 16 15 14 37 37 H 1.09000 * 110.98522 * 262.40195 * 18 17 16 38 38 H 1.09003 * 110.97942 * 26.19855 * 18 17 16 39 39 H 1.08994 * 110.48578 * 216.80435 * 19 18 17 40 40 H 1.09003 * 110.58968 * 94.22366 * 19 18 17 41 41 H 0.97000 * 124.40374 * 180.16904 * 22 20 19 42 42 H 1.08994 * 109.45879 * 298.86586 * 23 17 16 43 43 H 1.09007 * 109.45510 * 178.91902 * 23 17 16 44 44 H 1.09004 * 109.47531 * 300.38628 * 24 14 13 45 45 H 1.09004 * 109.48010 * 60.39788 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1252 1.4442 0.1032 5 6 1.4246 2.1928 1.1530 6 1 0.8174 3.0661 0.9662 7 6 1.6370 1.7645 2.4462 8 7 2.3762 0.7008 2.6736 9 14 0.8747 2.6950 3.8753 10 1 -0.6037 2.6932 3.7350 11 1 1.2510 2.0363 5.1519 12 1 1.3703 4.0949 3.8752 13 7 1.6673 2.0936 -1.2629 14 6 2.6536 1.8085 -2.3135 15 6 3.8052 2.8115 -2.2174 16 6 4.8373 2.5076 -3.3061 17 6 4.1757 2.6032 -4.6782 18 6 3.6667 4.0393 -4.9131 19 6 3.9205 4.2179 -6.4287 20 6 5.0329 3.2396 -6.7368 21 8 5.7155 3.2569 -7.7392 22 7 5.1544 2.3478 -5.7370 23 6 3.0123 1.6203 -4.7788 24 6 1.9864 1.9272 -3.6852 25 1 -0.3633 -1.0273 -0.0240 26 1 -0.3632 0.5344 -0.8778 27 1 -0.3633 0.4930 0.9017 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 2.5253 0.3992 3.5834 31 1 0.7409 1.8178 -1.5523 32 1 3.0405 0.7978 -2.1839 33 1 3.4195 3.8218 -2.3540 34 1 4.2762 2.7315 -1.2377 35 1 5.2313 1.5016 -3.1623 36 1 5.6522 3.2289 -3.2450 37 1 2.6043 4.1195 -4.6830 38 1 4.2455 4.7582 -4.3331 39 1 4.2388 5.2378 -6.6445 40 1 3.0254 3.9698 -6.9991 41 1 5.8055 1.6290 -5.7198 42 1 3.3841 0.6035 -4.6529 43 1 2.5402 1.7155 -5.7567 44 1 1.1618 1.2173 -3.7509 45 1 1.6056 2.9399 -3.8178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:09 Heat of formation + Delta-G solvation = -56.144296 kcal Electronic energy + Delta-G solvation = -23114.417733 eV Core-core repulsion = 19937.460497 eV Total energy + Delta-G solvation = -3176.957236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07791 -38.44171 -36.62034 -34.56493 -32.02942 -31.49306 -30.81966 -30.42033 -27.66230 -25.81770 -24.13894 -23.30645 -22.60711 -21.37371 -20.59194 -19.21982 -18.75995 -17.23114 -16.35187 -16.11988 -15.45664 -15.00545 -14.77088 -14.29461 -14.09225 -13.97982 -13.62079 -13.13149 -13.02208 -12.92813 -12.55439 -12.48461 -12.31271 -12.02347 -11.91255 -11.31890 -11.09306 -11.05824 -11.02617 -10.88334 -10.66751 -10.57718 -10.40652 -10.16874 -9.94193 -9.83596 -9.70311 -9.53165 -9.12127 -8.96310 -8.35162 -7.23733 -5.98781 -4.00182 2.49217 3.22916 3.32597 3.37482 3.40361 4.16298 4.34567 4.42821 4.55408 4.84839 4.88551 5.01749 5.10142 5.28575 5.32605 5.33418 5.45294 5.56657 5.57719 5.64363 5.74525 5.83749 5.88659 6.02286 6.06338 6.13523 6.28991 6.30971 6.33925 6.39976 6.54250 6.62005 6.73090 6.73669 6.87688 6.95489 7.27050 7.28916 7.48337 7.69161 7.88550 8.15277 8.28506 8.54064 8.62691 9.05530 9.63684 11.08218 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.003787 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.420002 B = 7391.032317 C = 7625.021576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.681 5.681 14 C 0.087 3.913 15 C -0.101 4.101 16 C -0.119 4.119 17 C 0.160 3.840 18 C -0.125 4.125 19 C -0.158 4.158 20 C 0.519 3.481 21 O -0.546 6.546 22 N -0.721 5.721 23 C -0.117 4.117 24 C -0.119 4.119 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.407 0.593 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 2.730 -13.348 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.023 4.023 15 C -0.140 4.140 16 C -0.157 4.157 17 C 0.074 3.926 18 C -0.162 4.162 19 C -0.198 4.198 20 C 0.306 3.694 21 O -0.423 6.423 22 N -0.375 5.375 23 C -0.157 4.157 24 C -0.157 4.157 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.246 0.754 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.829 3.338 -13.547 14.072 hybrid contribution -0.299 -1.027 0.769 1.318 sum 1.529 2.311 -12.778 13.075 Atomic orbital electron populations 1.21559 0.97717 0.97931 1.01234 1.22112 0.94984 1.01323 1.00073 1.19205 0.95954 0.88431 0.85512 0.94908 1.21031 1.30476 1.11477 0.89753 0.92134 1.24905 0.95579 0.95158 0.98695 1.69870 1.39229 1.24087 1.20457 0.86658 0.79608 0.80044 0.81646 1.20427 1.21577 1.20362 1.60852 1.03592 1.63273 1.03478 1.21420 0.93790 0.96643 0.90491 1.21494 0.94788 1.00040 0.97650 1.21801 0.98728 1.02328 0.92885 1.20795 0.88558 0.95568 0.87693 1.22782 1.03816 0.95257 0.94367 1.22394 0.98797 1.00437 0.98150 1.20976 0.84115 0.82265 0.82040 1.90737 1.49093 1.74256 1.28260 1.46381 1.36915 1.32754 1.21403 1.21786 0.95554 0.99045 0.99273 1.21791 0.97349 1.02361 0.94213 0.96014 0.95194 0.91538 0.89069 0.97228 0.93109 0.85462 0.94733 0.91176 0.91007 0.91730 0.91450 0.88328 0.89650 0.88247 0.87979 0.75440 0.91565 0.91783 0.91960 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.39 37.16 0.35 -2.24 16 2 C -0.15 -3.24 5.48 -26.73 -0.15 -3.38 16 3 C 0.22 4.99 2.14 -68.87 -0.15 4.84 16 4 H 0.03 0.85 7.13 -51.93 -0.37 0.48 16 5 C -0.49 -12.59 7.35 -34.44 -0.25 -12.84 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.51 5.23 -17.82 -0.09 1.42 16 8 N -0.90 -24.57 11.38 55.43 0.63 -23.94 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 N -0.68 -12.83 6.04 -100.95 -0.61 -13.44 16 14 C 0.09 1.32 2.28 -67.71 -0.15 1.17 16 15 C -0.10 -1.42 5.21 -26.70 -0.14 -1.56 16 16 C -0.12 -1.33 4.96 -26.89 -0.13 -1.46 16 17 C 0.16 1.59 0.91 -131.63 -0.12 1.47 16 18 C -0.12 -1.11 4.92 -25.23 -0.12 -1.23 16 19 C -0.16 -1.42 6.86 -26.69 -0.18 -1.60 16 20 C 0.52 6.30 8.44 -10.80 -0.09 6.21 16 21 O -0.55 -8.82 18.03 5.55 0.10 -8.72 16 22 N -0.72 -7.46 5.53 -47.28 -0.26 -7.72 16 23 C -0.12 -1.19 5.07 -26.90 -0.14 -1.33 16 24 C -0.12 -1.40 4.98 -26.70 -0.13 -1.53 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 27 H 0.07 1.50 7.05 -51.93 -0.37 1.14 16 28 H 0.09 2.32 6.25 -51.92 -0.32 1.99 16 29 H 0.01 0.19 7.36 -51.93 -0.38 -0.19 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.33 5.95 6.19 -39.29 -0.24 5.70 16 32 H 0.03 0.59 7.09 -51.93 -0.37 0.22 16 33 H 0.07 0.96 7.29 -51.93 -0.38 0.59 16 34 H 0.07 1.21 7.43 -51.93 -0.39 0.82 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.10 0.83 5.91 -51.93 -0.31 0.52 16 38 H 0.08 0.75 7.82 -51.93 -0.41 0.34 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.41 3.85 8.96 -40.82 -0.37 3.48 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.07 0.82 6.22 -51.93 -0.32 0.50 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -28.82 337.39 -9.06 -37.88 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.48 Total: 7.17 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.51 Total: -12.07 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.24 Total: -45.10 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.10 Total: -8.72 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.82 -9.06 -37.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.262 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds